BP918593 |
Clone id |
YMU001_000115_C10 |
Library |
YMU01 |
Length |
452 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000115_C10. |
Accession |
BP918593 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGCTCGCAGGAAGAGACCTCAAAGCCTGTACTTGGATCAGTAGCGGTGATTGGTGCAGGT GTGAGTGGTCTTGCAGGCAGCTTATCGTCTTAAGGTTGAAGGGGCAGCAGTGACAGTATT TGAGGCAGAGAGTATTAGCGGAGGAAAGGTAAAGAGCTTCTTTGAGGATGGATTTACGTG GGAAAAGGGACCCAACACAATGACAGAAAGCAATGTGGAAGTCAGTGAACTGATTGATGG ACTGCATCTGCGTGAAAAGCAACAATATGTAATTTTCTGAGGGTAACATAGCTTATGATG CGTGTTGATCTGGGGTTGTACGGATTTTAACATCGAGGAGCGAGTAACATTTCACCTATA TAATTGTAAGTTGAATTACTTACTACGCGACATTTAGGGTGGGATAAGCAGAGACACCGG AACAATGCACTTACTGCCTTTATTCATATGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O24164 |
Definition |
sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum |
Align length |
62 |
Score (bit) |
76.6 |
E-value |
4.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918593|Adiantum capillus-veneris mRNA, clone: YMU001_000115_C10. (452 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial O... 77 4e-14 sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/... 71 2e-12 sp|Q4L975|CRTN_STAHJ Dehydrosqualene desaturase OS=Staphylococcu... 38 0.018 sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|Q2FDU6|CRTN_STAA3 Dehydrosqualene desaturase OS=Staphylococcu... 35 0.15 sp|O32434|PPOX_PROFF Protoporphyrinogen oxidase OS=Propionibacte... 35 0.20 sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic O... 35 0.20 sp|Q6GDN7|CRTN_STAAR Dehydrosqualene desaturase OS=Staphylococcu... 35 0.20 sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic O... 34 0.25 sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subt... 33 0.57 sp|Q5HCY9|CRTN_STAAC Dehydrosqualene desaturase OS=Staphylococcu... 33 0.57 sp|P54979|CRTJ_MYXXA Phytoene dehydrogenase OS=Myxococcus xanthu... 33 0.57 sp|P21685|CRTI_PANAN Phytoene dehydrogenase OS=Pantoea ananas GN... 33 0.57 sp|Q6STF1|OXLA_AGKHP L-amino-acid oxidase OS=Agkistrodon halys p... 32 0.97 sp|Q52QW2|CRTS2_ONCHC Carotenoid isomerase 2, chloroplastic OS=O... 32 0.97 sp|Q52QW3|CRTS1_ONCHC Carotenoid isomerase 1, chloroplastic OS=O... 32 0.97 sp|Q90W54|OXLA_AGKHA L-amino-acid oxidase OS=Agkistrodon halys b... 32 1.3 sp|Q8NUQ3|CRTP_STAAW 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3 sp|Q6G6B0|CRTP_STAAS 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3 sp|Q7A3D9|CRTP_STAAN 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3 sp|Q99R73|CRTP_STAAM 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3 sp|Q53589|CRTP_STAAE 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3 sp|Q5HCY6|CRTP_STAAC 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3 sp|Q2YWE5|CRTP_STAAB 4,4'-diaponeurosporene oxidase OS=Staphyloc... 32 1.3
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1 Length = 504
Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/62 (58%), Positives = 47/62 (75%) Frame = +2
Query: 83 YRLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNVEVSELIDGLHLREKQ 262 Y+LK+ G VTVFEAE +GGK++S +DG W++G NTMTES +V+ LID L LREKQ Sbjct: 30 YKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQ 89
Query: 263 QY 268 Q+ Sbjct: 90 QF 91
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1 Length = 531
Score = 70.9 bits (172), Expect = 2e-12 Identities = 34/64 (53%), Positives = 46/64 (71%) Frame = +2
Query: 83 YRLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNVEVSELIDGLHLREKQ 262 Y+LK G VT+FEA+S +GGK+K+ +DG W++G NTMTES+ EV+ L D L +REK Sbjct: 59 YKLKSNGLNVTLFEADSRAGGKLKTVVKDGLIWDEGANTMTESDEEVTSLFDDLGIREKL 118
Query: 263 QYVI 274 Q I Sbjct: 119 QLPI 122
>sp|Q4L975|CRTN_STAHJ Dehydrosqualene desaturase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=crtN PE=3 SV=2 Length = 501
Score = 38.1 bits (87), Expect = 0.018 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 RL +G VT+FE GG++ F +DGFT++ GP + +V Sbjct: 18 RLAAKGHQVTIFEKNEQVGGRMSQFKKDGFTFDMGPTIVMVPDV 61
>sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MW2) GN=crtN PE=3 SV=1 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
>sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MSSA476) GN=crtN PE=3 SV=1 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
>sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcus aureus (strain N315) GN=crtN PE=1 SV=1 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
>sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=crtN PE=3 SV=1 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
>sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Newman) GN=crtN PE=1 SV=2 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
>sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=crtN PE=3 SV=1 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNTNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
>sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain NCTC 8325) GN=crtN PE=3 SV=1 Length = 502
Score = 35.0 bits (79), Expect = 0.15 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +2
Query: 86 RLKVEGAAVTVFEAESISGGKVKSFFEDGFTWEKGPNTMTESNV 217 R+ +G VT+FE + GG++ +DGFT++ GP + +V Sbjct: 18 RIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPDV 61
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQQ3 |
Definition |
tr|B8LQQ3|B8LQQ3_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
64 |
Score (bit) |
82.0 |
E-value |
1.0e-14 |
Report |
|