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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918595
Clone id YMU001_000115_C12
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTTATTGCTGAAATTGGAAAACAAGTCAAGGACTTAAACTTGGCTGATGAGCTATGT
TAGCAAGTTACTTTCATGGAAAGTGAAAAGAGATACTTCTTAGGGTACATCTTTGTGTGA
TAACTCGTTTTGCATACTCATGTGTATTCTAAATGGAGTCTACACACTATGATTGGATAG
GAATCGGTAACACAAGATGGTTGCAAATGGACAACAATGTGAAAAATCAAGATGTTACTC
TTGGTTTCATTGAACCTCCTGCTGAACCGTGTTCTGATCAACCAAACAGTTGGATCCATG
AAGGATGCCACTATAGAAAACATTAATGTATCATCACTCTTGTTTTTGAGGACGAAAATG
CTTCTCCAAAGGGGGAGTAATGTCATGCCAAGGGTAGGACCAGGCACGGCCAAGGGCCAG
GACGGACATGCAGTAAAGGAGGTCCCTATATTTAGCAGGCCAAGGGCCTATATAGGGCAT
GGCTGGGTGGTGATGAGCATG
■■Homology search results ■■ -
sp_hit_id P98106
Definition sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus
Align length 50
Score (bit) 27.7
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918595|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_C12.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus GN=Selp PE=2...    28   0.16 
sp|Q42626|OLNB3_BRANA Oleosin-B3 OS=Brassica napus GN=OlnB3 PE=1...    30   4.8  

>sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus GN=Selp PE=2
           SV=1
          Length = 768

 Score = 27.7 bits (60), Expect(2) = 0.16
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 5   LLLKLENKSRT*TWLMSYVSKLLSWKVKRDTS*GTSLCDNSFCILMCILN 154
           L+ +L N+ +  TW  +Y +K  SW   R      + C   F  L+ I N
Sbjct: 29  LISELVNRKKVATWTYNYSTKAYSWNNSR------AFCKRHFTDLVAIQN 72



 Score = 26.2 bits (56), Expect(2) = 0.16
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
 Frame = +3

Query: 168 YDWIGIGNT------RWLQMDNNVK--NQDVTLGFIEPPAEPCSDQPNSWIHEGCHYRKH 323
           + W+G   T       W   + N K  NQD    +I+      +  P  W  E C  RK 
Sbjct: 101 WTWVGTNKTLTAEAENWADNEPNNKRNNQDCVEIYIKS-----NSAPGKWNDEPCFKRKR 155

Query: 324 *CIITLVFEDENASPKGE 377
               T   +D + + +GE
Sbjct: 156 ALCYTASCQDMSCNSQGE 173


>sp|Q42626|OLNB3_BRANA Oleosin-B3 OS=Brassica napus GN=OlnB3 PE=1
           SV=1
          Length = 424

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 351 DENASPKGE*CHAKGRTRHGQGPGRTCSKGGPY 449
           DE+   KGE  H KG ++HG+G   T  KGG +
Sbjct: 195 DEDKHGKGESKHGKGESKHGKGES-THGKGGKH 226
tr_hit_id A9N5Z3
Definition tr|A9N5Z3|A9N5Z3_SALPB Putative uncharacterized protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Align length 52
Score (bit) 37.0
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918595|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_C12.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9N5Z3|A9N5Z3_SALPB Putative uncharacterized protein OS=Salmo...    37   0.52 
tr|Q8ZLY0|Q8ZLY0_SALTY Putative transcriptional regulator OS=Sal...    36   0.88 
tr|Q8Z3M2|Q8Z3M2_SALTI Putative uncharacterized protein STY3393 ...    36   0.88 
tr|Q57JP5|Q57JP5_SALCH Putative transcriptional regulator OS=Sal...    36   0.88 
tr|B5REH2|B5REH2_SALG2 Putative uncharacterized protein yqjI OS=...    36   0.88 
tr|B5QZ50|B5QZ50_SALEP Putative uncharacterized protein yqjI OS=...    36   0.88 
tr|B5FHU9|B5FHU9_SALDC Transcriptional regulator, PadR family OS...    36   0.88 
tr|B4TVU8|B4TVU8_SALSV Transcriptional regulator, PadR family OS...    36   0.88 
tr|B4TIU2|B4TIU2_SALHS Transcriptional regulator, PadR family OS...    36   0.88 
tr|B4T684|B4T684_SALNS Transcriptional regulator, PadR family OS...    36   0.88 
tr|Q2QHE1|Q2QHE1_SALET Putative transcriptional regulator (Fragm...    36   0.88 
tr|B5Q5R5|B5Q5R5_SALVI Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5PF00|B5PF00_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5P4F2|B5P4F2_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5NQU9|B5NQU9_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5NCJ2|B5NCJ2_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5MVK2|B5MVK2_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5MS67|B5MS67_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B5CG81|B5CG81_SALET Transcriptional regulator, PadR family pr...    36   0.88 
tr|B5C0S2|B5C0S2_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B3YLX3|B3YLX3_SALET Transcriptional regulator, PadR family OS...    36   0.88 
tr|B0EMC4|B0EMC4_ENTDI Putative uncharacterized protein OS=Entam...    33   9.7  

>tr|A9N5Z3|A9N5Z3_SALPB Putative uncharacterized protein
           OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
           GN=SPAB_04011 PE=4 SV=1
          Length = 214

 Score = 37.0 bits (84), Expect = 0.52
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 20  CKDREHQ--HEGCHS---------AHQHENASCGGEHLHGHGCGRHGQGGGR 60


>tr|Q8ZLY0|Q8ZLY0_SALTY Putative transcriptional regulator
           OS=Salmonella typhimurium GN=yqjI PE=4 SV=1
          Length = 215

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 21  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 61


>tr|Q8Z3M2|Q8Z3M2_SALTI Putative uncharacterized protein STY3393
           OS=Salmonella typhi GN=STY3393 PE=4 SV=1
          Length = 214

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 20  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 60


>tr|Q57JP5|Q57JP5_SALCH Putative transcriptional regulator
           OS=Salmonella choleraesuis GN=yqjI PE=4 SV=1
          Length = 215

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 21  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 61


>tr|B5REH2|B5REH2_SALG2 Putative uncharacterized protein yqjI
           OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
           GN=yqjI PE=4 SV=1
          Length = 215

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 21  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 61


>tr|B5QZ50|B5QZ50_SALEP Putative uncharacterized protein yqjI
           OS=Salmonella enteritidis PT4 (strain P125109) GN=yqjI
           PE=4 SV=1
          Length = 215

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 21  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 61


>tr|B5FHU9|B5FHU9_SALDC Transcriptional regulator, PadR family
           OS=Salmonella dublin (strain CT_02021853) GN=SeD_A3571
           PE=4 SV=1
          Length = 214

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 20  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 60


>tr|B4TVU8|B4TVU8_SALSV Transcriptional regulator, PadR family
           OS=Salmonella schwarzengrund (strain CVM19633)
           GN=SeSA_A3405 PE=4 SV=1
          Length = 214

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 20  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 60


>tr|B4TIU2|B4TIU2_SALHS Transcriptional regulator, PadR family
           OS=Salmonella heidelberg (strain SL476) GN=SeHA_C3509
           PE=4 SV=1
          Length = 214

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 20  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 60


>tr|B4T684|B4T684_SALNS Transcriptional regulator, PadR family
           OS=Salmonella newport (strain SL254) GN=SNSL254_A3475
           PE=4 SV=1
          Length = 214

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 270 CSDQPNSWIHEGCHYRKH*CIITLVFEDENASPKGE*CHAKGRTRHGQGPGR 425
           C D+ +   HEGCH            + ENAS  GE  H  G  RHGQG GR
Sbjct: 20  CKDREHQ--HEGCHS---------AHQHENASCGGEHRHGHGCGRHGQGGGR 60