BP918598
Clone id YMU001_000115_D03
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTAGTCAACTCTGTCGTAGGGCTTTTCAAAATCGAGAAGAAAAATCACCAAATCCTCAC
CACGGAGCCACGTTATTGCAGAAGCCTCCCAAAAAGTAAAGATGCTGTCAAGGGTACTAC
GCTACTTGACAAAACCTGTCTGAGTCCCATGTATAATTCTCTCTAGAAGTAGCTGAATCC
TCAAACTCAGAGCCTTGGCAAGAATTTTGTAGGCCAATTTGAGGATGGTGATGGGGCGCC
AGTGTCGAATCTCATCCAAGGAGCCACCCTCCTTGGGAATGAGGTAGATCAGGCCCTCAC
TCATGCTGTCAGGCATCTCTCCTGTGTGCAGGATGTATTGAAAAGAATCCACGTTCCTAG
CCACAAGTGGATAACCGAACGCCCCAACCCGCTCCAGACGCCCAATAGCCTCCCTAACCA
TCGAATCAAGATGATCAAACCACCATCATGTAACATATTTTTGGTGATCTCGGACTATTA
AACCATGCCAACCCCACACCTATGGCCGACACGATCCCACCATCATCATCATCATTAACT
CGAGGGAATTCGCG
■■Homology search results ■■ -
sp_hit_id P14381
Definition sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis
Align length 106
Score (bit) 50.4
E-value 6.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918598|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_D03.
(554 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa prot... 50 6e-06
sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nyc... 42 0.002
sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 O... 39 0.022
sp|Q5WF63|DXS_BACSK 1-deoxy-D-xylulose-5-phosphate synthase OS=B... 30 6.0
sp|O35548|MMP16_RAT Matrix metalloproteinase-16 OS=Rattus norveg... 30 7.9
sp|Q9WTR0|MMP16_MOUSE Matrix metalloproteinase-16 OS=Mus musculu... 30 7.9

>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein
OS=Xenopus laevis PE=4 SV=1
Length = 1308

Score = 50.4 bits (119), Expect = 6e-06
Identities = 33/106 (31%), Positives = 50/106 (47%)
Frame = -2

Query: 322 GEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLLERIIHGT 143
GE+P S ++ L+PK+ G L I++WRP LR++ +L +IH
Sbjct: 499 GELPLSCRRAVLSLLPKK-GDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPD 557

Query: 142 QTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRVD 5
Q+ V R+ D++F + G L LD EK +DRVD
Sbjct: 558 QSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVD 603


>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog
OS=Nycticebus coucang PE=1 SV=1
Length = 1260

Score = 42.4 bits (98), Expect = 0.002
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Frame = -2

Query: 379 FGYPLVARNVDSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXX 200
F LV ++ FQ I G +P++ E I LIPK G ++RP
Sbjct: 483 FKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKIL 542

Query: 199 XXXXXLRIQLLLERIIHGTQTGFV-------K*RSTLDSIFTFWEASAITWLRGEDLVIF 41
RIQ +++IIH Q GF+ R +++ I I L+ +D +I
Sbjct: 543 NKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVI------QHINKLKNKDHMIL 596

Query: 40 LLDFEKPYDRV 8
+D EK +D +
Sbjct: 597 SIDAEKAFDNI 607


>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1
OS=Mus musculus GN=Pol PE=2 SV=2
Length = 1281

Score = 38.5 bits (88), Expect = 0.022
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Frame = -2

Query: 343 FQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLL 164
F I G +P+S E I LIPK +I ++RP RIQ +
Sbjct: 503 FHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHI 562

Query: 163 ERIIHGTQTGFV-------K*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRV 8
+ IIH Q GF+ R +++ I I L+ ++ +I LD EK +D++
Sbjct: 563 KAIIHPDQVGFIPGMQGWFNIRKSINVI------HYINKLKDKNHMIISLDAEKAFDKI 615


>sp|Q5WF63|DXS_BACSK 1-deoxy-D-xylulose-5-phosphate synthase
OS=Bacillus clausii (strain KSM-K16) GN=dxs PE=3 SV=1
Length = 628

Score = 30.4 bits (67), Expect = 6.0
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2

Query: 397 LERVGAFGYPLV---ARNVDSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRH 242
+ ++ AFG L R DS +Y++ +G + M G YL P +G LD+++H
Sbjct: 208 IRKIPAFGGKLADTAERLKDSLKYLMVSGMFFEEM--GFTYLGPVDGHDLDDLKH 260


>sp|O35548|MMP16_RAT Matrix metalloproteinase-16 OS=Rattus
norvegicus GN=Mmp16 PE=2 SV=1
Length = 607

Score = 30.0 bits (66), Expect = 7.9
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2

Query: 38 KKNHQILTTEPRYCRSLPKSKDAVKGTTLLDKTCLSP 148
K N+QIL EP Y RS+ K G T DK LSP
Sbjct: 509 KFNNQILKVEPGYPRSILKDFMGCDGPTDRDKEGLSP 545


>sp|Q9WTR0|MMP16_MOUSE Matrix metalloproteinase-16 OS=Mus musculus
GN=Mmp16 PE=2 SV=2
Length = 607

Score = 30.0 bits (66), Expect = 7.9
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2

Query: 38 KKNHQILTTEPRYCRSLPKSKDAVKGTTLLDKTCLSP 148
K N+QIL EP Y RS+ K G T DK LSP
Sbjct: 509 KFNNQILKVEPGYPRSILKDFMGCDGPTDRDKEGLSP 545


tr_hit_id Q76IM5
Definition tr|Q76IM5|Q76IM5_TETNG Pol-like protein OS=Tetraodon nigroviridis
Align length 116
Score (bit) 55.5
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918598|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_D03.
(554 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q76IM5|Q76IM5_TETNG Pol-like protein OS=Tetraodon nigroviridi... 55 2e-06
tr|O93521|O93521_ORYLA Reverse transcriptase OS=Oryzias latipes ... 53 1e-05
tr|O93520|O93520_ORYLA Reverse transcriptase OS=Oryzias latipes ... 53 1e-05
tr|Q7FS87|Q7FS87_MAIZE Putative glycerol 3-phosphate permease OS... 53 1e-05
tr|Q2QRJ0|Q2QRJ0_ORYSJ Retrotransposon protein, putative, unclas... 53 1e-05
tr|A5B9Y6|A5B9Y6_VITVI Putative uncharacterized protein OS=Vitis... 50 6e-05
tr|A5BJU4|A5BJU4_VITVI Putative uncharacterized protein OS=Vitis... 50 8e-05
tr|Q2QS51|Q2QS51_ORYSJ Transposon protein, putative, CACTA, En/S... 49 1e-04
tr|A5C5D1|A5C5D1_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|A5C2T1|A5C2T1_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|A5B7Z9|A5B7Z9_VITVI Putative uncharacterized protein (Fragmen... 49 1e-04
tr|A5B4A5|A5B4A5_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|A5AV27|A5AV27_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|A5ARE1|A5ARE1_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|Q76B32|Q76B32_TETNG Reverse transcriptase OS=Tetraodon nigrov... 49 2e-04
tr|A5C1R8|A5C1R8_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04
tr|Q2QPE4|Q2QPE4_ORYSJ Retrotransposon protein, putative, unclas... 49 2e-04
tr|A5C4H7|A5C4H7_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04
tr|A5BQN8|A5BQN8_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04
tr|Q8SAX1|Q8SAX1_ORYSJ Putative non-LTR retroelement reverse tra... 48 3e-04
tr|A5CAA2|A5CAA2_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A5C6Y8|A5C6Y8_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A5C3T9|A5C3T9_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A5BPI6|A5BPI6_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A5BI72|A5BI72_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|A5AQ18|A5AQ18_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04
tr|Q7XLZ5|Q7XLZ5_ORYSJ OSJNBa0086O06.14 protein OS=Oryza sativa ... 48 4e-04
tr|A5BS85|A5BS85_VITVI Putative uncharacterized protein OS=Vitis... 48 4e-04
tr|A5BRJ2|A5BRJ2_VITVI Putative uncharacterized protein OS=Vitis... 48 4e-04
tr|A5BN97|A5BN97_VITVI Putative uncharacterized protein OS=Vitis... 48 4e-04

>tr|Q76IM5|Q76IM5_TETNG Pol-like protein OS=Tetraodon nigroviridis
GN=ORF2 PE=4 SV=1
Length = 1318

Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/116 (29%), Positives = 58/116 (50%)
Frame = -2

Query: 352 VDSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQ 173
++ F L +G +P S ++ L+PK+ G+L +IR+WRP R++
Sbjct: 513 LEVFNESLSSGSLPVSCRRAVMALLPKK-GNLQDIRNWRPVSLLCTDYKILSKVLATRLR 571

Query: 172 LLLERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRVD 5
+E +IH QT V RS +D++ + + L G + + LD EK +DRV+
Sbjct: 572 EAMEEVIHRDQTYCVPGRSIVDNVHLIRDVLKTSSLLGLNTGLISLDQEKAFDRVE 627


>tr|O93521|O93521_ORYLA Reverse transcriptase OS=Oryzias latipes
PE=4 SV=1
Length = 1258

Score = 53.1 bits (126), Expect = 1e-05
Identities = 32/120 (26%), Positives = 56/120 (46%)
Frame = -2

Query: 367 LVARNVDSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXX 188
L+ + +F +++ P S ++ +I +IPKEG + ++RP
Sbjct: 489 LIPTLLKTFNWVMEKKTTPLSWNKAIISIIPKEGKDRLDCANYRPVSVLNIDYKLFTSII 548

Query: 187 XLRIQLLLERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRV 8
R++ +L +IH QTGF+K R T DSI + ++ ++ LD EK +D V
Sbjct: 549 SRRLETILPMLIHKDQTGFIKQRQTQDSIRKVLHIIHQVVQQKQETLVISLDAEKAFDSV 608


>tr|O93520|O93520_ORYLA Reverse transcriptase OS=Oryzias latipes
PE=4 SV=1
Length = 1258

Score = 53.1 bits (126), Expect = 1e-05
Identities = 32/120 (26%), Positives = 56/120 (46%)
Frame = -2

Query: 367 LVARNVDSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXX 188
L+ + +F +++ P S +E +I +IPKEG + ++RP
Sbjct: 489 LIPTLLKTFNWVMEKKMTPLSWNEAIISIIPKEGKDRLDCANYRPVSVLNIDYKLFTSII 548

Query: 187 XLRIQLLLERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRV 8
R++ +L ++H QTGF+K R T DSI + ++ ++ LD EK +D V
Sbjct: 549 SRRLETILPMLMHKDQTGFIKQRQTQDSIRKVLNIIHQVVQQKQETLVISLDAEKAFDSV 608


>tr|Q7FS87|Q7FS87_MAIZE Putative glycerol 3-phosphate permease
OS=Zea mays GN=Z138B04_Z333J11.41 PE=4 SV=1
Length = 1279

Score = 53.1 bits (126), Expect = 1e-05
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = -2

Query: 373 YPLVARNV-DSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXX 197
+P++A + D F S++ + LIPK G S D + +RP
Sbjct: 81 WPVIAPDFYDLFNKFFEGSLCMHSINGSYVTLIPKNG-SPDSVGDYRPISLLNTSVKVLT 139

Query: 196 XXXXLRIQLLLERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPY 17
R+QL++ +++H Q GF+K RS D + +E ++ +++VI LDFEK +
Sbjct: 140 KILANRLQLVITKLVHQNQYGFIKDRSIQDCLPWAFEYISLCHKSRKEMVILKLDFEKTF 199

Query: 16 DRVD 5
D+++
Sbjct: 200 DKLE 203


>tr|Q2QRJ0|Q2QRJ0_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os12g27410 PE=4 SV=1
Length = 885

Score = 53.1 bits (126), Expect = 1e-05
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Frame = -2

Query: 430 LDSMVREAIGRLER---VGAFGYP---------LVARNVDSFQYILHTGEMP-DSMSEGL 290
L+ +R+A+ +E G G+P ++ ++ + + LHTGE+P S++ G+
Sbjct: 513 LEKEIRDAVFDMEHNKAPGLDGFPAEFYQKFWEVIKHDLMNLFHELHTGELPLFSLNFGV 572

Query: 289 IYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLLERIIHGTQTGFVK*RSTL 110
I L+PK + + I+ +RP RI + + ++ TQT F++ R+ L
Sbjct: 573 ITLLPKVKEA-NRIQQYRPICLLNVSFKLFTKVATNRINSVADHVVSPTQTAFMRGRNIL 631

Query: 109 DSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRV 8
+ + E + + VIF +DFEK YD+V
Sbjct: 632 EGVVILHETLHELHRKKLNGVIFKIDFEKAYDKV 665


>tr|A5B9Y6|A5B9Y6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_017106 PE=4 SV=1
Length = 1293

Score = 50.4 bits (119), Expect = 6e-05
Identities = 32/112 (28%), Positives = 52/112 (46%)
Frame = -2

Query: 343 FQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLL 164
F+ G S++ + L+PK+GG+ D ++ +RP RI+ ++
Sbjct: 703 FREFRERGRFVKSLNATFLVLVPKKGGAQD-LKDFRPISLVGSLYKLLTKVLVNRIKKVM 761

Query: 163 ERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRV 8
E++I Q FVK R LD++ EA + V++ LD EK YD V
Sbjct: 762 EKVISEPQNAFVKGRQILDAVLIANEAVDSRLKSNQGGVLYKLDIEKAYDHV 813


>tr|A5BJU4|A5BJU4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037759 PE=4 SV=1
Length = 350

Score = 50.1 bits (118), Expect = 8e-05
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Frame = -2

Query: 442 WFDHLDSMVREAIGRLERVGAFGY--PLVARNVDSFQYILHTGEMPDSMSEGLIYLIPKE 269
W +D+++ E RLE G P V TG S++ + LIPK+
Sbjct: 45 WKPRIDALIFE---RLEEGDVEGLEKPFSKEEVFGALQFHETGSYVRSLNATFLVLIPKK 101

Query: 268 GGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLLERIIHGTQTGFVK*RSTLDSIFTFW 89
GG+ ++++ +RP RI+ +L ++I +Q FV+ R +D++
Sbjct: 102 GGA-EDLKDFRPISLVGGLYKWLAKVLANRIKGVLAKVISTSQNAFVEGRQIMDAVLVAN 160

Query: 88 EASAITWLRGEDLVIFLLDFEKPYDRVD 5
EA + ++ LD EK YD VD
Sbjct: 161 EAIDSIVKSNKGAILCKLDIEKAYDHVD 188


>tr|Q2QS51|Q2QS51_ORYSJ Transposon protein, putative, CACTA, En/Spm
sub-class OS=Oryza sativa subsp. japonica
GN=LOC_Os12g25320 PE=4 SV=2
Length = 2042

Score = 49.3 bits (116), Expect = 1e-04
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Frame = -2

Query: 436 DHL-----DSMVREAIGRLERVGAFGYP-LVARNVDSFQYIL-----------HTGEMPD 308
DHL + VREAI +E A G ++A F +++ H GE+P
Sbjct: 1595 DHLIAPFSEEEVREAIFDMETNKAPGPDGILAEFYQKFWHVIKHDLLTMFNEFHAGELPI 1654

Query: 307 -SMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLLERIIHGTQTGF 131
S++ G+I LIPK + + I+ +RP RI + +RI+ TQT F
Sbjct: 1655 FSLNFGVITLIPKVKEA-NRIQQYRPICLLNASFKIFTKVATNRINSVADRIVSPTQTAF 1713

Query: 130 VK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRV 8
++ + LD + E R VI +DFEK YD+V
Sbjct: 1714 MRGCNILDGVVVIHETVHELHRRKLSGVILKIDFEKAYDKV 1754


>tr|A5C5D1|A5C5D1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_035196 PE=4 SV=1
Length = 1522

Score = 49.3 bits (116), Expect = 1e-04
Identities = 35/116 (30%), Positives = 53/116 (45%)
Frame = -2

Query: 352 VDSFQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQ 173
VD F+ S++ + LIPK+GG+ +++ +RP RI+
Sbjct: 785 VDVFKEFYEDKSFAKSLNSTFLVLIPKKGGA-EDLGDFRPISLLXGVYKLLAKVLSNRIK 843

Query: 172 LLLERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRVD 5
+L++++ Q FVK R LD+ E R E VI LD EK YD +D
Sbjct: 844 KVLDKVVSPDQNAFVKGRQILDASLIANEVIDYWLKRKEKGVICKLDIEKXYDSID 899


>tr|A5C2T1|A5C2T1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_007637 PE=4 SV=1
Length = 1676

Score = 49.3 bits (116), Expect = 1e-04
Identities = 30/113 (26%), Positives = 54/113 (47%)
Frame = -2

Query: 343 FQYILHTGEMPDSMSEGLIYLIPKEGGSLDEIRHWRPXXXXXXXXXXXXXXXXLRIQLLL 164
F+ TG SM+ + LIPK+GG+ ++++++RP R++ +L
Sbjct: 1024 FRQFYETGRFVRSMNATFLVLIPKKGGA-EDLKNFRPISLVGGLYKWLAKVLANRLKGVL 1082

Query: 163 ERIIHGTQTGFVK*RSTLDSIFTFWEASAITWLRGEDLVIFLLDFEKPYDRVD 5
++I +Q FV+ R +D++ +A ++ LD EK YD VD
Sbjct: 1083 AKVISLSQNAFVEGRQIMDAVLIANQAIDSILKNNRGAIMCKLDIEKAYDHVD 1135