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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918601
Clone id YMU001_000115_D06
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATAACAAAAGCACCTAAAGTGATGGATTGCCGTACAAAAGTACAGTAACTCTAGTGTGA
ATCAAGCTTTTCTTCCTTTCCGAGAGACAAGGAATTCGACTATGTTTTAGAGAAGATCTC
ATGGCTCCCAAAAAGGGAAAAAAAGCAAAAAAAGATGCAAAAGAGCTCTCACCTGTAAGA
GAAGAAAGCAAAAGCCGAAGCTCTTGCCATCAAGGCAGAGGAAGCGAGGAAGAAGAAAAT
TGCAGCAGTGAAAGCTCGTGTGCAACATCTCAAGGATGTTGAGGAAAAGTATAGTAACGA
GAACATGCAGAAGATTCATGATAAGTGGCGCAAAATCATGAGAACTGCTAAAACCAAGGA
ACTTCACAAAGACATCGAAATATTCTCAGAGTGCTATGATTGTGAGGTTAAACGCAAAGA
TGGCTCTATTGGCTATATTGATGAGGCACTTACTTGAAGCTGAACAGCAACGGGATCTGG
CTTTTAGCAAACATTTGGAGATTCTCAATCAGCTGATGAGCT
■■Homology search results ■■ -
sp_hit_id Q2TA16
Definition sp|Q2TA16|CCD65_BOVIN Coiled-coil domain-containing protein 65 OS=Bos taurus
Align length 59
Score (bit) 51.2
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918601|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_D06.
         (522 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2TA16|CCD65_BOVIN Coiled-coil domain-containing protein 65 O...    51   3e-08
sp|Q4R7G7|CCD65_MACFA Coiled-coil domain-containing protein 65 O...    52   8e-08
sp|Q8IXS2|CCD65_HUMAN Coiled-coil domain-containing protein 65 O...    52   1e-07
sp|Q5XIJ8|CCD65_RAT Coiled-coil domain-containing protein 65 OS=...    54   4e-07
sp|Q8VHI7|CCD65_MOUSE Coiled-coil domain-containing protein 65 O...    52   2e-06
sp|Q6DHI2|CCD65_DANRE Coiled-coil domain-containing protein 65 O...    35   0.16 

>sp|Q2TA16|CCD65_BOVIN Coiled-coil domain-containing protein 65
           OS=Bos taurus GN=CCDC65 PE=2 SV=1
          Length = 498

 Score = 51.2 bits (121), Expect(2) = 3e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
 Frame = +2

Query: 263 QHLKDV---EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSI 430
           Q LKD    EE  S  N+ KI+ +WR ++R  KT+ELHKDIEI S+ ++  V  KD  I
Sbjct: 41  QFLKDKLAKEEHNSALNLNKINTQWRTVLREIKTRELHKDIEILSQTFERVVDCKDSVI 99



 Score = 25.8 bits (55), Expect(2) = 3e-08
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 408 LNAKMALLAILMRHLLEAEQQRDLAFSKHLEILNQLMS 521
           ++ K +++  L + L EAE+Q   A   HL  ++QL++
Sbjct: 92  VDCKDSVIKSLAKDLSEAEEQHAHALRSHLHSIDQLLA 129


>sp|Q4R7G7|CCD65_MACFA Coiled-coil domain-containing protein 65
           OS=Macaca fascicularis GN=CCDC65 PE=2 SV=1
          Length = 484

 Score = 51.6 bits (122), Expect(2) = 8e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
 Frame = +2

Query: 263 QHLKDV---EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSI 430
           Q LKD    EE  S  N+ KI+ +WR ++R  KT+ELHKDIEI S+ ++  V  KD  I
Sbjct: 41  QFLKDKLAKEEHNSALNLNKINTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDNVI 99



 Score = 23.9 bits (50), Expect(2) = 8e-08
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 408 LNAKMALLAILMRHLLEAEQQRDLAFSKHLEILNQLMS 521
           ++ K  ++  L + L EAE+Q   A   HL  ++QL++
Sbjct: 92  VDCKDNVIKSLAKDLSEAEEQYARALRSHLHSVDQLLA 129


>sp|Q8IXS2|CCD65_HUMAN Coiled-coil domain-containing protein 65
           OS=Homo sapiens GN=CCDC65 PE=1 SV=2
          Length = 484

 Score = 51.6 bits (122), Expect(2) = 1e-07
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
 Frame = +2

Query: 263 QHLKDV---EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSI 430
           Q LKD    EE  S  N+ KI+ +WR ++R  KT+ELHKDIEI S+ ++  V  KD  I
Sbjct: 41  QFLKDKLAKEEHNSALNLNKINTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDNVI 99



 Score = 23.1 bits (48), Expect(2) = 1e-07
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 408 LNAKMALLAILMRHLLEAEQQRDLAFSKHLEILNQLMS 521
           ++ K  ++  L + L EAE+Q   A   HL  ++QL++
Sbjct: 92  VDCKDNVIKSLAKDLSEAEEQYAHALRSHLHNVDQLLA 129


>sp|Q5XIJ8|CCD65_RAT Coiled-coil domain-containing protein 65
           OS=Rattus norvegicus GN=Ccdc65 PE=2 SV=1
          Length = 502

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +2

Query: 263 QHLKDV---EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIG 433
           Q LKD    EE  S+ N+ KI+ +WR ++R  KT+ELHKDIEI S+ ++  V  KD  I 
Sbjct: 41  QFLKDKLAKEEHNSSLNLNKINTQWRTVLREVKTRELHKDIEILSQIFERVVDCKDSVIK 100

Query: 434 YIDEALT 454
            +   LT
Sbjct: 101 SLARDLT 107


>sp|Q8VHI7|CCD65_MOUSE Coiled-coil domain-containing protein 65
           OS=Mus musculus GN=Ccdc65 PE=2 SV=1
          Length = 493

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +2

Query: 263 QHLKDV---EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIG 433
           Q LKD    EE  S  N+ KI+ +WR I+R  KT+ELH+DIEI S+ ++  V  KD  I 
Sbjct: 44  QFLKDKLAKEEHNSALNLNKINTQWRTILREVKTRELHQDIEILSQTFERVVDCKDSVIK 103

Query: 434 YIDEALT 454
            + + LT
Sbjct: 104 SLAKDLT 110


>sp|Q6DHI2|CCD65_DANRE Coiled-coil domain-containing protein 65
           OS=Danio rerio GN=ccdc65 PE=2 SV=2
          Length = 492

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSI 430
           EEK +  N+ K+  +WR ++   K  EL  D+ + S+ ++  +  KD  I
Sbjct: 54  EEKNTVLNLHKLRQQWRAVLTQTKIAELRNDMSVLSQTFERVLDYKDNII 103
tr_hit_id A8JB22
Definition tr|A8JB22|A8JB22_CHLRE Flagellar associated protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 57
Score (bit) 57.8
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918601|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_D06.
         (522 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8JB22|A8JB22_CHLRE Flagellar associated protein (Fragment) O...    58   3e-07
tr|B2RBE2|B2RBE2_HUMAN cDNA, FLJ95464, highly similar to Homo sa...    52   2e-06
tr|B3SAP1|B3SAP1_TRIAD Putative uncharacterized protein OS=Trich...    53   1e-05
tr|A9RJI2|A9RJI2_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|A9T2Z5|A9T2Z5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q24DJ0|Q24DJ0_TETTH Putative uncharacterized protein OS=Tetra...    44   0.005
tr|A9UXB8|A9UXB8_MONBE Predicted protein (Fragment) OS=Monosiga ...    44   0.006
tr|A0DGK0|A0DGK0_PARTE Chromosome undetermined scaffold_5, whole...    44   0.006
tr|A0C9H2|A0C9H2_PARTE Chromosome undetermined scaffold_16, whol...    44   0.006
tr|A0DPB8|A0DPB8_PARTE Chromosome undetermined scaffold_59, whol...    42   0.014
tr|A0BCL4|A0BCL4_PARTE Chromosome undetermined scaffold_10, whol...    42   0.014
tr|B0WTE2|B0WTE2_CULQU Putative uncharacterized protein OS=Culex...    40   0.090
tr|B4MQB9|B4MQB9_DROWI GK21846 OS=Drosophila willistoni GN=GK218...    37   0.094
tr|Q4Q8R5|Q4Q8R5_LEIMA Putative uncharacterized protein OS=Leish...    33   0.20 
tr|B4KP98|B4KP98_DROMO GI19232 OS=Drosophila mojavensis GN=GI192...    39   0.20 
tr|Q9W212|Q9W212_DROME CG30259, isoform A OS=Drosophila melanoga...    38   0.26 
tr|Q291P4|Q291P4_DROPS GA15731 OS=Drosophila pseudoobscura pseud...    38   0.26 
tr|Q1RKW5|Q1RKW5_DROME CG30259, isoform B OS=Drosophila melanoga...    38   0.26 
tr|B4QHL7|B4QHL7_DROSI GD25108 OS=Drosophila simulans GN=GD25108...    38   0.26 
tr|B4P5R8|B4P5R8_DROYA GE11840 OS=Drosophila yakuba GN=GE11840 P...    38   0.26 
tr|B4I895|B4I895_DROSE GM15614 OS=Drosophila sechellia GN=GM1561...    38   0.26 
tr|B4GAG1|B4GAG1_DROPE GL10710 OS=Drosophila persimilis GN=GL107...    38   0.26 
tr|B3NNM6|B3NNM6_DROER GG20099 OS=Drosophila erecta GN=GG20099 P...    38   0.26 
tr|A4I7D1|A4I7D1_LEIIN Putative uncharacterized protein OS=Leish...    33   0.33 
tr|A4I378|A4I378_LEIIN Putative uncharacterized protein OS=Leish...    33   0.33 
tr|A9RAY9|A9RAY9_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.34 
tr|B3MEH8|B3MEH8_DROAN GF11331 OS=Drosophila ananassae GN=GF1133...    37   0.45 
tr|A5K2B3|A5K2B3_PLAVI Putative uncharacterized protein OS=Plasm...    36   1.00 
tr|B4LIT2|B4LIT2_DROVI GJ20307 OS=Drosophila virilis GN=GJ20307 ...    35   1.7  
tr|B4K138|B4K138_DROGR GH23667 OS=Drosophila grimshawi GN=GH2366...    34   3.8  

>tr|A8JB22|A8JB22_CHLRE Flagellar associated protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=FAP250 PE=4 SV=1
          Length = 412

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIGYIDEAL 451
           E++Y++ N  KIH++WRKIMR AK +EL ++IEI S+ ++ EV RKD  +  +D  L
Sbjct: 8   EQRYAHLNGIKIHNQWRKIMRMAKVEELRREIEILSQNHEREVDRKDAIMQMLDRDL 64


>tr|B2RBE2|B2RBE2_HUMAN cDNA, FLJ95464, highly similar to Homo
           sapiens NYD-SP28 protein (NYD-SP28), mRNA (Coiled-coil
           domain containing 65, isoform CRA_a) OS=Homo sapiens
           GN=CCDC65 PE=2 SV=1
          Length = 484

 Score = 51.6 bits (122), Expect(2) = 2e-06
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
 Frame = +2

Query: 263 QHLKDV---EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSI 430
           Q LKD    EE  S  N+ KI+ +WR ++R  KT+ELHKDIEI S+ ++  V  KD  I
Sbjct: 41  QFLKDKLAKEEHNSALNLNKINTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDNVI 99



 Score = 23.1 bits (48), Expect(2) = 2e-06
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 408 LNAKMALLAILMRHLLEAEQQRDLAFSKHLEILNQLMS 521
           ++ K  ++  L + L EAE+Q   A   HL  ++QL++
Sbjct: 92  VDCKDNVIKSLAKDLSEAEEQYAHALRSHLHNVDQLLA 129


>tr|B3SAP1|B3SAP1_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_32405 PE=4 SV=1
          Length = 499

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSI 430
           EEKYS  N+ K++ +WR IMR AK K+L KDIE+  + ++  V RKD  +
Sbjct: 55  EEKYSKFNINKLNYQWRAIMREAKAKDLVKDIEVLQQTFERVVDRKDAIV 104


>tr|A9RJI2|A9RJI2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66958 PE=4 SV=1
          Length = 1129

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIG 433
           EEK S  +M +IH++WR IMR+AK KE  +DI+  S+ +  +V+ KD  IG
Sbjct: 555 EEKRSTNSMLQIHNQWRSIMRSAKLKEQREDIDWLSKKHVHQVEVKDRVIG 605


>tr|A9T2Z5|A9T2Z5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_87401 PE=4 SV=1
          Length = 524

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 24/57 (42%), Positives = 35/57 (61%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIGYIDEAL 451
           EEK S ++M +IH KWR I+R AK KE   DI+  ++ +  +++ KD  IG   E L
Sbjct: 54  EEKLSVKSMLEIHKKWRSILRIAKIKEQRDDIDWLTKNHVRQMELKDHIIGLYREQL 110


>tr|Q24DJ0|Q24DJ0_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00971830 PE=4
           SV=1
          Length = 506

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 24/61 (39%), Positives = 38/61 (62%)
 Frame = +2

Query: 269 LKDVEEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIGYIDEA 448
           +KD E+K    N +K+   WRKIMR AKT++L  +I+I+S+    E+  K+  I  +D+ 
Sbjct: 54  IKD-EQKVVTFNKKKLITYWRKIMRIAKTEQLKNEIDIYSQNNQRELDSKEAFIQMLDKN 112

Query: 449 L 451
           L
Sbjct: 113 L 113


>tr|A9UXB8|A9UXB8_MONBE Predicted protein (Fragment) OS=Monosiga
           brevicollis GN=16305 PE=4 SV=1
          Length = 469

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 19/47 (40%), Positives = 32/47 (68%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKD 421
           EEKY+   + KI+ +W  IMR AK+ EL ++IEI ++ ++  + RK+
Sbjct: 6   EEKYTRAALHKINAQWMAIMRDAKSDELKREIEILAQTFERVLDRKE 52


>tr|A0DGK0|A0DGK0_PARTE Chromosome undetermined scaffold_5, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00002296001 PE=4 SV=1
          Length = 505

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 21/57 (36%), Positives = 35/57 (61%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIGYIDEAL 451
           E+K  N N +K+   WR+ MR  KT++L +DIE++S+    E+  K+  I  +D+ L
Sbjct: 57  EQKIVNFNTKKLMAYWRRTMRAVKTEQLKQDIELYSQNNKRELDSKEAFIQMLDKNL 113


>tr|A0C9H2|A0C9H2_PARTE Chromosome undetermined scaffold_16, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00006745001 PE=4 SV=1
          Length = 505

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 21/57 (36%), Positives = 35/57 (61%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIGYIDEAL 451
           E+K  N N +K+   WR+ MR  KT++L +DIE++S+    E+  K+  I  +D+ L
Sbjct: 57  EQKIVNFNTKKLMAYWRRTMRAVKTEQLKQDIELYSQNNKRELDSKEAFIQMLDKNL 113


>tr|A0DPB8|A0DPB8_PARTE Chromosome undetermined scaffold_59, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00019067001 PE=4 SV=1
          Length = 507

 Score = 42.4 bits (98), Expect = 0.014
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = +2

Query: 281 EEKYSNENMQKIHDKWRKIMRTAKTKELHKDIEIFSECYDCEVKRKDGSIGYIDEAL 451
           E+K  N N +K+   WR+ MR  KT++L  DIE++S+    E+  K+  I  +D+ L
Sbjct: 59  EQKIVNFNTKKLMAYWRRTMRAVKTEQLKLDIELYSQNNKRELDSKEAFIQMLDKNL 115