BP918602
Clone id YMU001_000115_D07
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATATCATATAAATTCACATCATTGTGAGAATACATTCCAGTTAGGCATCACTGCCATGA
ACGAAGCCCAATTCAGAAAACATTACACACGACAAAACTGTGGCTCTTCATGTTCACCAC
TTCCTACACGAGCACTGGCTCTCCATAAGCTTACGCACGGAAAGAGTGCCCTTTATGATG
CATTAGATAGGGCCCGGTGTAAGAGTGAAACAAAACTCATCCTTCCTTGAGCTAGGAAGT
GTTACTTTACATGTAAAGAGGCAGGCCGCCTACTTTGTTGGGATTCAGTGTTTCAAGTAT
GCAACACACCTATATTTCGAAAAGTCTCATCAATGCCTTAATAATCGAAAGAAAGCTCTC
TGTCAAAAAGTGGAGTTAGCTTCATCTCCTATGAGTTCAAGCTTTGCCTA
■■Homology search results ■■ -
sp_hit_id B1AUE5
Definition sp|B1AUE5|PEX10_MOUSE Peroxisome assembly protein 10 OS=Mus musculus
Align length 57
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918602|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_D07.
(395 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|B1AUE5|PEX10_MOUSE Peroxisome assembly protein 10 OS=Mus musc... 31 2.2
sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=... 29 6.4
sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=... 29 6.4
sp|Q9MAQ0|SSG1_ARATH Probable granule-bound starch synthase 1, c... 29 8.3

>sp|B1AUE5|PEX10_MOUSE Peroxisome assembly protein 10 OS=Mus
musculus GN=Pex10 PE=2 SV=1
Length = 324

Score = 30.8 bits (68), Expect = 2.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3

Query: 141 LHK-LTHGKSALYDALDRARCKSETKLILP*ARKCYFTCKEAGRLLCWDSVFQVCNT 308
LH+ L+H +S+L D RA C++ + R+ + T G L CW+ + + CNT
Sbjct: 249 LHRNLSHRRSSLED---RAVCRTPLCTLCLEERR-HSTATPCGHLFCWECITEWCNT 301


>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1
SV=1
Length = 1658

Score = 29.3 bits (64), Expect = 6.4
Identities = 27/87 (31%), Positives = 33/87 (37%)
Frame = +1

Query: 91 DKTVALHVHHFLHEHWLSISLRTERVPFMMH*IGPGVRVKQNSSFLELGSVTLHVKRQAA 270
+ T HV H S+ L ER + + GVR K+NS LE + HV
Sbjct: 1327 ENTPQSHVDHS------SLKLALERAEELCSQVNEGVREKENSDRLEW--IQAHV----- 1373

Query: 271 YFVGIQCFKYATHLYFEKSHQCLNNRK 351
QC A L F CL RK
Sbjct: 1374 -----QCEGLAEQLIFNSLTNCLGPRK 1395


>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1
SV=2
Length = 1696

Score = 29.3 bits (64), Expect = 6.4
Identities = 24/75 (32%), Positives = 29/75 (38%)
Frame = +1

Query: 127 HEHWLSISLRTERVPFMMH*IGPGVRVKQNSSFLELGSVTLHVKRQAAYFVGIQCFKYAT 306
H S+ L ER + + GVR K+NS LE + HV QC A
Sbjct: 1371 HADHSSLKLALERAEELCSQVNEGVREKENSDRLEW--IQAHV----------QCEGLAE 1418

Query: 307 HLYFEKSHQCLNNRK 351
L F CL RK
Sbjct: 1419 QLIFNSLTNCLGPRK 1433


>sp|Q9MAQ0|SSG1_ARATH Probable granule-bound starch synthase 1,
chloroplastic/amyloplastic OS=Arabidopsis thaliana
GN=WAXY PE=2 SV=1
Length = 610

Score = 28.9 bits (63), Expect = 8.3
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +3

Query: 48 ITAMNEAQFRKHYTRQNCGSSCSPLPTRALALHKLTHGKSALYDALDRARCKSETKLILP 227
+TA + R + SSCS + L LTH ++ +D + +S+ K +
Sbjct: 4 VTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQAKPVSA 63

Query: 228 *ARKCYFTCKEAGRLLC 278
+ K K AG+++C
Sbjct: 64 KSSKRSSKVKTAGKIVC 80


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918602|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_D07.
(395 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******