BP918612 |
Clone id |
YMU001_000115_E05 |
Library |
YMU01 |
Length |
547 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000115_E05. |
Accession |
BP918612 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2762Contig1 |
Sequence |
ATAAAGAATACGTGAATTTGAATTATTGTATGGGTATCAAAAGAAGGGTCTAGCTACAAA AATTAATGGCGAAACAAAAAAATCAAGAATTGGTGATTTGAACCCAGGACGCAGCAGCAC TGGGGATTCCCTAGTTGTCAACAAACAGCATGTAATAGGCCGGGGGCGCCACGTTGGAGT TTGGTGGGGCAGTTACGTTAACAGAGTAGGAGGAGGTAGAGCTGTCGCCCCCACTGATGA GTACCTGCCCAACCAGGCGTAGTCGCAGGAAACGGAGTCCCTGCGAGAAGGAATGCGTAG TGAAAGGTGAGCTCACCAGACTCACACCAAATTCTGCAGCGGCACTCGTGACTTGCACCT GCACGGTGAAGGCCTGGCCATACACAATGGTGGTGGGTGCCGAGACGATGGAGGGTCGCT CACCATCGTTCGAAGAATCCAAATACGAGGGAGAGAATGCCTCCACTCGCAGCTCTGTTG GAAAATCGCCTGTAAATGTATAGAATTGATGAGTGTTGCTTCCTGCTATGAGCACTCGCC CATCAGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q01745 |
Definition |
sp|Q01745|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae |
Align length |
152 |
Score (bit) |
42.4 |
E-value |
0.001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918612|Adiantum capillus-veneris mRNA, clone: YMU001_000115_E05. (547 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q01745|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae GN=GAO... 42 0.001 sp|Q09MB4|YCF2_CITSI Protein ycf2 OS=Citrus sinensis GN=ycf2-A P... 32 2.6 sp|Q9H2Q1|TM133_HUMAN Transmembrane protein 133 OS=Homo sapiens ... 31 3.4 sp|Q62225|CISH_MOUSE Cytokine-inducible SH2-containing protein O... 31 3.4 sp|Q2HJ53|CISH_BOVIN Cytokine-inducible SH2-containing protein O... 31 3.4 sp|Q3MDS1|YCF4_ANAVT Photosystem I assembly protein ycf4 OS=Anab... 31 4.5 sp|Q184E3|VATB_CLOD6 V-type ATP synthase beta chain OS=Clostridi... 31 4.5 sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=... 31 4.5 sp|Q8YPA9|YCF4_ANASP Photosystem I assembly protein ycf4 OS=Anab... 30 5.9 sp|Q86NH1|SYD1_CAEEL Rho GTPase-activating protein syd-1 OS=Caen... 30 5.9 sp|Q61CA4|SYD1_CAEBR Rho GTPase-activating protein syd-1 OS=Caen... 30 5.9 sp|Q54DE3|GDT7_DICDI Growth-differentiation transition protein 7... 30 5.9 sp|Q2PMM5|YCF2_SOYBN Protein ycf2 OS=Glycine max GN=ycf2-A PE=3 ... 30 7.6 sp|A2VCU8|NELL2_XENTR Protein kinase C-binding protein NELL2 OS=... 30 7.6 sp|Q7ZXL5|NELL2_XENLA Protein kinase C-binding protein NELL2 OS=... 30 7.6 sp|Q08CM4|LIN54_DANRE Protein lin-54 homolog OS=Danio rerio GN=l... 30 7.6 sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 ... 30 7.7 sp|Q5XIR4|CCD33_RAT Coiled-coil domain-containing protein 33 OS=... 30 9.9
>sp|Q01745|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1 Length = 680
Score = 42.4 bits (98), Expect = 0.001 Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 5/152 (3%) Frame = -1
Query: 547 PDGRVLIAGSNTHQFYTFTGDFPTE-LRVEAFSPSYLDSSNDG--ERPSIVSAPT-TIVY 380 PDGRV G GD T + F+P+YL +SN RP I T ++ Sbjct: 544 PDGRVFNGGGG------LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKV 597
Query: 379 GQAFTVQVQVTSAAAEFGVSLVSSPFTTHSFSQGLRFLRLRLVGQVLIXXXXXXXXXXSV 200 G T+ + + A SL+ TH+ + R + L L S Sbjct: 598 GGRITISTDSSISKA----SLIRYGTATHTVNTDQRRIPLTLTNN----------GGNSY 643
Query: 199 NVTAPPNSNVAPPAYYMLFVDN-*GIPSAAAS 107 + P +S VA P Y+MLFV N G+PS A++ Sbjct: 644 SFQVPSDSGVALPGYWMLFVMNSAGVPSVAST 675
>sp|Q09MB4|YCF2_CITSI Protein ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1 Length = 2282
Score = 31.6 bits (70), Expect = 2.6 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3
Query: 255 RRSRRKRSPCEKECVVKGELTRLTPNSAA 341 +R R+KRS C K+CV KG+++R +A Sbjct: 1191 KRKRKKRSLCLKKCVEKGQMSRTFQRDSA 1219
>sp|Q9H2Q1|TM133_HUMAN Transmembrane protein 133 OS=Homo sapiens GN=TMEM133 PE=2 SV=1 Length = 129
Score = 31.2 bits (69), Expect = 3.4 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Frame = -3
Query: 398 THHHCVWPGLHRAGASHECRCRI-WCESGELTF--------HYAFLLAGTPFPATTPGWA 246 T HHCV PG H + + HE R+ +C E+TF Y L +P P Sbjct: 2 TSHHCVGPGNHISWSGHEKEHRLDYCP--EVTFPLTKGFPLGYTLLFNFASYPFLLPSKI 59
Query: 245 GTHQWGRQLYLLLLC 201 T + +L +LC Sbjct: 60 KTLLRNKDSFLNILC 74
>sp|Q62225|CISH_MOUSE Cytokine-inducible SH2-containing protein OS=Mus musculus GN=Cish PE=1 SV=1 Length = 257
Score = 31.2 bits (69), Expect = 3.4 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = -1
Query: 547 PDGRVLIAGSNTHQFYTFTGDF-----PTELRVEAFSPSYLDSSNDGERPSIVSAPTTIV 383 P+G L+ S TH Y FT PT +R+E S+ SN RP I++ P + Sbjct: 100 PEGTFLVRDS-THPSYLFTLSVKTTRGPTNVRIEYADSSFRLDSNCLSRPRILAFPDVV- 157
Query: 382 YGQAFTVQVQVTSAAAE 332 VQ V S AA+ Sbjct: 158 ----SLVQHYVASCAAD 170
>sp|Q2HJ53|CISH_BOVIN Cytokine-inducible SH2-containing protein OS=Bos taurus GN=CISH PE=2 SV=1 Length = 254
Score = 31.2 bits (69), Expect = 3.4 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = -1
Query: 547 PDGRVLIAGSNTHQFYTFTGDF-----PTELRVEAFSPSYLDSSNDGERPSIVSAPTTIV 383 P+G L+ S TH Y FT PT +R+E S+ SN RP I++ P + Sbjct: 100 PEGTFLVRDS-THPSYLFTLSVKTTRGPTNVRIEYADSSFRLDSNCLSRPRILAFPDVV- 157
Query: 382 YGQAFTVQVQVTSAAAE 332 VQ V S AA+ Sbjct: 158 ----SLVQHYVASCAAD 170
>sp|Q3MDS1|YCF4_ANAVT Photosystem I assembly protein ycf4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ycf4 PE=3 SV=1 Length = 198
Score = 30.8 bits (68), Expect = 4.5 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +2
Query: 98 LNPGRSSTGDSLV--VNKQHVIGRGRHVGVWWGSYVNRVGGGRAVAPTDEYL 247 +N G S GDS V Q V+G R WW S V G +A YL Sbjct: 7 INKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFLLAGISSYL 58
>sp|Q184E3|VATB_CLOD6 V-type ATP synthase beta chain OS=Clostridium difficile (strain 630) GN=atpB PE=3 SV=1 Length = 457
Score = 30.8 bits (68), Expect = 4.5 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 3/151 (1%) Frame = +2
Query: 14 EFELLYGYQKKGLATKINGETKKSRIGDLNPGRSSTGDSLVVNKQHVIGRGRHVGVWWGS 193 E EL G ++ ++NG+T ++ + SSTG +L +K +G+ GV Sbjct: 31 EIELSNGEIRRCKVLEVNGDTALVQLFE-----SSTGINLAESKVRFLGKSLDFGVS-PD 84
Query: 194 YVNRV--GGGRAVAPTDEYLPNQA*SQETESLREGMRSER*AH-QTHTKFCSGTRDLHLH 364 + RV G GR + E +P++ + R QT G L + Sbjct: 85 ILGRVFSGMGRPIDGGPEIIPDKRLDINGAPINPAARDYPAEFIQTGVSAIDGLNTL-VR 143
Query: 365 GEGLAIHNGGGCRDDGGSLTIVRRIQIRGRE 457 G+ L I +G G ++ I R+ ++RG + Sbjct: 144 GQKLPIFSGSGLPHANLAVQIARQAKVRGTD 174
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=1 Length = 1786
Score = 30.8 bits (68), Expect = 4.5 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +1
Query: 118 HWGFPSCQQTACN 156 HWGFPSCQ CN Sbjct: 858 HWGFPSCQPCQCN 870
>sp|Q8YPA9|YCF4_ANASP Photosystem I assembly protein ycf4 OS=Anabaena sp. (strain PCC 7120) GN=ycf4 PE=3 SV=1 Length = 198
Score = 30.4 bits (67), Expect = 5.9 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +2
Query: 98 LNPGRSSTGDSLV--VNKQHVIGRGRHVGVWWGSYVNRVGGGRAVAPTDEYL 247 +N G S GDS V Q V+G R WW S V G +A YL Sbjct: 7 INKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFFLAGISSYL 58
>sp|Q86NH1|SYD1_CAEEL Rho GTPase-activating protein syd-1 OS=Caenorhabditis elegans GN=syd-1 PE=2 SV=1 Length = 987
Score = 30.4 bits (67), Expect = 5.9 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 13/63 (20%) Frame = -2
Query: 480 QQSCEWRH-----------SLP-RIWILRTMVSDPPSSRHPPPLCMARPSPCRCKSRV-P 340 Q++ W H SLP R + +++V P RHPPP+ RPS + V P Sbjct: 530 QRATRWSHTYGEQRAPRTSSLPGRTVLAQSLVGSPVLPRHPPPIVQDRPSAVFDRYHVSP 589
Query: 339 LQN 331 L N Sbjct: 590 LMN 592
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S707 |
Definition |
tr|A9S707|A9S707_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
149 |
Score (bit) |
148.0 |
E-value |
2.0e-34 |
Report |
|