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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918614
Clone id YMU001_000115_E07
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAAAGCAACATTCAGCAGGTGTTACGTCAACTGAGCTGACATGCCTGGGAGCATCCTGT
TTTCGTTTGACGTTCCTGATAATGACGGGAGTATGCGTCTTCGGGCTCTTTTTGACTGCT
GTGGTGTCAATAAGGACCAGGACAGTGTACAAAACATTGTACGGGAAGCAAAATGTGGTA
GGGTGACAGAAATGGATTACAGAGACAGGGATACTCTATGAAGAGAAGAGTGCGTTTTAT
AAAAAGTCAAAAGTGGGTGCGTGAAGCGCATCTGTGATGGCATGGCTATTCTCCGCTCTC
TATACACGGAGACAACGCCTGTATCCGTGGCCTCTTTCTCGAACAAGGAGCTTACATTTA
TGCTTTTAATGCGGACAGCGAAAGGGGAGTTGGGCTTTGTGTATGTGGAGAATTCTTATA
TGTGCACAAAGGGGACAAGAAGGCATGTGTTGAGTCCTTGTGCCGTTGTTAACCGCAGTG
AAGCATCAGAGTCCT
■■Homology search results ■■ -
sp_hit_id P64858
Definition sp|P64858|Y1527_MYCBO Uncharacterized protein Mb1527 OS=Mycobacterium bovis
Align length 28
Score (bit) 30.4
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918614|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_E07.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P64858|Y1527_MYCBO Uncharacterized protein Mb1527 OS=Mycobact...    30   4.7  
sp|P64857|Y1490_MYCTU Uncharacterized protein Rv1490/MT1536 OS=M...    30   4.7  
sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficien...    30   4.7  

>sp|P64858|Y1527_MYCBO Uncharacterized protein Mb1527
           OS=Mycobacterium bovis GN=Mb1527 PE=4 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  MTGVCVFGLFLTAVVSIRTRTVYKTLYG 165
           MT +  F +FLT   + RTR +  TLYG
Sbjct: 160 MTALVAFSIFLTRAHTSRTRVILSTLYG 187


>sp|P64857|Y1490_MYCTU Uncharacterized protein Rv1490/MT1536
           OS=Mycobacterium tuberculosis GN=Rv1490 PE=4 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  MTGVCVFGLFLTAVVSIRTRTVYKTLYG 165
           MT +  F +FLT   + RTR +  TLYG
Sbjct: 160 MTALVAFSIFLTRAHTSRTRVILSTLYG 187


>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency
            virus agm.vervet (isolate AGM155) GN=gag-pol PE=3 SV=2
          Length = 1470

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 130  IRTRTVYKTLYGKQNVVG*QKWITETGILYEEKSAFYKKSKVG 258
            +RT+ + K L GK+N++   +W  E    YEE     K  + G
Sbjct: 888  LRTKNICKLLRGKKNLLDVVEWTPEAEAEYEENKEILKTEQEG 930
tr_hit_id A9THV5
Definition tr|A9THV5|A9THV5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 60
Score (bit) 60.1
E-value 6.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918614|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_E07.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9THV5|A9THV5_PHYPA Predicted protein OS=Physcomitrella paten...    60   6e-08
tr|A7QS38|A7QS38_VITVI Chromosome undetermined scaffold_155, who...    58   2e-07
tr|Q8H6R3|Q8H6R3_PONTR Nodulin-like protein OS=Poncirus trifolia...    56   8e-07
tr|B7FLG8|B7FLG8_MEDTR Putative uncharacterized protein OS=Medic...    55   2e-06
tr|Q9M8M1|Q9M8M1_ARATH Nodulin-like protein; 38383-40406 (Putati...    54   3e-06
tr|A9TNT4|A9TNT4_PHYPA Predicted protein OS=Physcomitrella paten...    54   3e-06
tr|A7Q8X8|A7Q8X8_VITVI Chromosome chr9 scaffold_65, whole genome...    54   5e-06
tr|A5AIV9|A5AIV9_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|A9RWI4|A9RWI4_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|Q8H613|Q8H613_ORYSJ Os06g0179200 protein OS=Oryza sativa subs...    51   3e-05
tr|A2Y9Y8|A2Y9Y8_ORYSI Putative uncharacterized protein OS=Oryza...    51   3e-05
tr|B8LRH5|B8LRH5_PICSI Putative uncharacterized protein OS=Picea...    50   5e-05
tr|A9S8T3|A9S8T3_PHYPA Predicted protein OS=Physcomitrella paten...    50   5e-05
tr|B4FUR0|B4FUR0_MAIZE Putative uncharacterized protein OS=Zea m...    50   8e-05
tr|B6TE00|B6TE00_MAIZE Nodulin-like protein OS=Zea mays PE=2 SV=1      49   1e-04
tr|Q851R0|Q851R0_ORYSJ Putative nodule-specific protein (Nodulin...    49   1e-04
tr|Q0DMP3|Q0DMP3_ORYSJ Os03g0800000 protein (Fragment) OS=Oryza ...    49   1e-04
tr|A7PHY5|A7PHY5_VITVI Chromosome chr13 scaffold_17, whole genom...    49   1e-04
tr|A3ANP4|A3ANP4_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A2XMZ5|A2XMZ5_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|O81120|O81120_LOTJA Nodule-specific protein Nlj70 OS=Lotus ja...    49   2e-04
tr|A7PHY6|A7PHY6_VITVI Chromosome chr13 scaffold_17, whole genom...    48   2e-04
tr|O80960|O80960_ARATH Nodulin-like protein (At2g39210/T16B24.15...    48   3e-04
tr|A5LGL6|A5LGL6_POTDI Nodule protein Nlj70-like protein (Fragme...    48   3e-04
tr|A9TEB2|A9TEB2_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   4e-04
tr|A7P9W1|A7P9W1_VITVI Chromosome chr14 scaffold_9, whole genome...    47   4e-04
tr|A2YT18|A2YT18_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|Q501E0|Q501E0_ARATH At2g34355 OS=Arabidopsis thaliana PE=2 SV=1     47   5e-04
tr|Q0WR23|Q0WR23_ARATH Nodulin-like protein OS=Arabidopsis thali...    47   5e-04
tr|O80784|O80784_ARATH Nodulin-like protein OS=Arabidopsis thali...    47   5e-04

>tr|A9THV5|A9THV5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_92962 PE=4 SV=1
          Length = 588

 Score = 60.1 bits (144), Expect = 6e-08
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
 Frame = +1

Query: 1   AKQHSAGVTSTE---LTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLYGKQ 171
           A++   G+   E   L C GA CFR++ LIMTGVC+ G+ L  ++  RT+ VY TLYGKQ
Sbjct: 511 AQKQEGGIAPPEVDALRCEGAVCFRMSLLIMTGVCLVGVILNVILISRTQRVYTTLYGKQ 570


>tr|A7QS38|A7QS38_VITVI Chromosome undetermined scaffold_155, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005663001 PE=4 SV=1
          Length = 527

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 24/54 (44%), Positives = 38/54 (70%)
 Frame = +1

Query: 1   AKQHSAGVTSTELTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           AKQ    + ++ ++CLG +CFRLTFL++ GVC  G  L+ ++++R R VY+ LY
Sbjct: 461 AKQQGMNLLNSSVSCLGPNCFRLTFLVLAGVCGVGSILSIILTMRIRPVYQMLY 514


>tr|Q8H6R3|Q8H6R3_PONTR Nodulin-like protein OS=Poncirus trifoliata
           GN=CTV.14 PE=4 SV=1
          Length = 564

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +1

Query: 40  TCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           TC+GA CFRLTFL++ GVC  G  L+ +++IR R VY+ LY
Sbjct: 511 TCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLY 551


>tr|B7FLG8|B7FLG8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 552

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +1

Query: 40  TCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           TC+G  C+RL F++M G CV G FL  ++S RT+TVY  +Y
Sbjct: 497 TCVGGHCYRLVFIVMAGACVVGFFLDILLSYRTKTVYNKIY 537


>tr|Q9M8M1|Q9M8M1_ARATH Nodulin-like protein; 38383-40406 (Putative
           nodulin protein) OS=Arabidopsis thaliana GN=At1g80530
           PE=2 SV=1
          Length = 561

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 20/43 (46%), Positives = 32/43 (74%)
 Frame = +1

Query: 34  ELTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           ++TC+G  CFR+TFL++ GVC  G  L+ ++++R R VY+ LY
Sbjct: 505 KMTCIGPDCFRVTFLVLAGVCGLGTLLSIILTVRIRPVYQALY 547


>tr|A9TNT4|A9TNT4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_148264 PE=4 SV=1
          Length = 595

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 4   KQHS--AGVTSTELTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLYGK 168
           KQH   A      L C G  CFRLT  IMTG+C+ G  L  ++  RTR VY  LYGK
Sbjct: 519 KQHGGVAPRNGEALRCEGPVCFRLTLFIMTGMCMLGAVLNTILIFRTRRVYTMLYGK 575


>tr|A7Q8X8|A7Q8X8_VITVI Chromosome chr9 scaffold_65, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033229001
           PE=4 SV=1
          Length = 564

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +1

Query: 1   AKQHSAGVTSTELTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           AKQ S+       TCLG +CFRLTFL++ G C  G  L+ +++IR + VY+ LY
Sbjct: 504 AKQQSS-------TCLGGTCFRLTFLVLAGACGLGTILSIILTIRIKPVYQMLY 550


>tr|A5AIV9|A5AIV9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014065 PE=4 SV=1
          Length = 504

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +1

Query: 1   AKQHSAGVTSTELTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           AKQ S+       TCLG +CFRLTFL++ G C  G  L+ +++IR + VY+ LY
Sbjct: 444 AKQQSS-------TCLGGTCFRLTFLVLAGACGLGTILSIILTIRIKPVYQMLY 490


>tr|A9RWI4|A9RWI4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178800 PE=4 SV=1
          Length = 550

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 31/48 (64%)
 Frame = +1

Query: 37  LTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLYGKQNVV 180
           + C+G+ CFR  F++M G+C FG+ L  V+ +R R +Y+ LYG    V
Sbjct: 492 ILCVGSHCFRSVFIVMAGMCAFGILLNVVLILRIRPLYQDLYGPNGSV 539


>tr|Q8H613|Q8H613_ORYSJ Os06g0179200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0035I03.15 PE=2 SV=1
          Length = 567

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +1

Query: 4   KQHSAGVTSTELTCLGASCFRLTFLIMTGVCVFGLFLTAVVSIRTRTVYKTLY 162
           +QH A    T++ C G +CFRLTF ++ GV   G  L+ V+++R R VY+ LY
Sbjct: 503 RQH-ATTMDTDIACHGPNCFRLTFCVLAGVASLGTLLSIVLTVRIRPVYQMLY 554