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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918617
Clone id YMU001_000115_E10
Library
Length 392
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATGGCAGCAAGTTGGACACCAATTCCTCAAACATTTGAAGTGCCGGACAGGCACACAGA
TAAGGGTTAGTGGCTGCCTCTATGGGCTTAAGTTGTCGATGCATGCTAGTTGGGTATCTG
ATGTGAAGTTGGTCACTTGTGAGTTGCAGGTGGTAAAGCAGGGCGGTGAACCAGATGAAC
TTTAGGTTATGTCTTTGCAATAATGCCCAAGATTTTGGGAGGTGGCGAGATGGAAGTCCA
AGGCAGAAAAGGGACGCTATAGGCTCTCAGAGGTAGGCAGATTTCCTCTGAGGTTTCGTA
CTTGTATTTCTTGTGAGCTTTCGCTGACTTCTTGTCGCTTATCTTTCGTAGCTGAAGTGG
GAACCTCCACTATATCTTATCTGGTGGGCTGG
■■Homology search results ■■ -
sp_hit_id Q06651
Definition sp|Q06651|PIB1_YEAST E3 ubiquitin-protein ligase PIB1 OS=Saccharomyces cerevisiae
Align length 28
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918617|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_E10.
         (392 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06651|PIB1_YEAST E3 ubiquitin-protein ligase PIB1 OS=Sacchar...    32   0.99 
sp|O31474|YCGJ_BACSU Uncharacterized methyltransferase ycgJ OS=B...    30   2.9  
sp|Q96Q45|AL2S4_HUMAN Amyotrophic lateral sclerosis 2 chromosoma...    30   2.9  
sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenor...    30   3.8  
sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens ...    30   4.9  
sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase...    30   4.9  
sp|Q9Y572|RIPK3_HUMAN Receptor-interacting serine/threonine-prot...    29   6.4  
sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase...    29   8.4  

>sp|Q06651|PIB1_YEAST E3 ubiquitin-protein ligase PIB1
           OS=Saccharomyces cerevisiae GN=PIB1 PE=1 SV=1
          Length = 286

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 103 CIDNLSP*RQPLTLICVPVRHFKCLRNW 20
           C +N+ P  +   L C+ V H+KC++NW
Sbjct: 228 CFENMEPGEKVGRLECLCVFHYKCIKNW 255


>sp|O31474|YCGJ_BACSU Uncharacterized methyltransferase ycgJ
           OS=Bacillus subtilis GN=ycgJ PE=1 SV=1
          Length = 228

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 364 VPTSATKDKRQEVSESSQEIQVRNLRGNLPTSESL*RPFSALDFHLATSQNLGHYCKDI 188
           +   ATK+  +  S  +QE  V N+R    T+ESL  PF    F + T +   H+  D+
Sbjct: 38  IGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--PFPDDSFDIITCRYAAHHFSDV 94


>sp|Q96Q45|AL2S4_HUMAN Amyotrophic lateral sclerosis 2 chromosomal
           region candidate gene 4 protein OS=Homo sapiens
           GN=ALS2CR4 PE=2 SV=1
          Length = 432

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
 Frame = -1

Query: 179 FIWFTALLYHL--QLTSDQLHIRYPTSMHRQL 90
           F++FTAL+  L  Q+TSD++H+  P+S++  L
Sbjct: 338 FLYFTALILSLSQQMTSDRIHLYTPSSVNGSL 369


>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1
           OS=Caenorhabditis elegans GN=hrd-1 PE=1 SV=1
          Length = 610

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -2

Query: 115 TQLACIDNLSP*RQPLTLICVPVRHFKCLRNW------CPTC 8
           T + C + ++    P  L C  V H  CLR+W      CPTC
Sbjct: 291 TCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTC 332


>sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens
           GN=LNX2 PE=1 SV=1
          Length = 690

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = -2

Query: 187 T*SSSGSPPCFT------TCNSQVTNFTS--DTQLACIDNLSP*RQPLTLICVPVRHFKC 32
           T SSS +P CF       T  + + N+ +  D  L C   L P  QPL   C     +KC
Sbjct: 14  TSSSSLNPLCFECGQQHWTRENHLYNYQNEVDDDLVCHICLQPLLQPLDTPCGHTFCYKC 73

Query: 31  LRNW 20
           LRN+
Sbjct: 74  LRNF 77


>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase
           hrd1 OS=Schizosaccharomyces pombe GN=hrd1 PE=1 SV=1
          Length = 677

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
 Frame = -2

Query: 73  PLTLICVPVRHFKCLRNW------CPTC 8
           P  L C  + HF CLRNW      CP C
Sbjct: 323 PKRLPCGHILHFHCLRNWLERQQTCPIC 350


>sp|Q9Y572|RIPK3_HUMAN Receptor-interacting serine/threonine-protein
           kinase 3 OS=Homo sapiens GN=RIPK3 PE=1 SV=2
          Length = 518

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -1

Query: 239 GLPSRHLPKSWALLQRHNLKFIWFTALLYHLQLTSDQLHIRYPTSMHRQLKPIEAATNPY 60
           GL     P+ W LL R          LL  + L    LH + P  +HR LKP     +P 
Sbjct: 104 GLLQSQCPRPWPLLCR----------LLKEVVLGMFYLHDQNPVLLHRDLKPSNVLLDPE 153

Query: 59  L 57
           L
Sbjct: 154 L 154


>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase
           HRD1 OS=Saccharomyces cerevisiae GN=HRD1 PE=1 SV=1
          Length = 551

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
 Frame = -2

Query: 154 TTCNSQVTNFTSDTQLA--CIDNL--SP*RQ--------PLTLICVPVRHFKCLRNW--- 20
           T    Q+ N  +D  +   C+D L  SP +Q        P  L C  + H  CL+NW   
Sbjct: 333 TVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMER 392

Query: 19  ---CPTC 8
              CP C
Sbjct: 393 SQTCPIC 399
tr_hit_id A0D900
Definition tr|A0D900|A0D900_PARTE Chromosome undetermined scaffold_41, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 40
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918617|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_E10.
         (392 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0D900|A0D900_PARTE Chromosome undetermined scaffold_41, whol...    35   2.4  
tr|Q4XTH3|Q4XTH3_PLACH Putative uncharacterized protein OS=Plasm...    34   3.2  
tr|Q4YWD0|Q4YWD0_PLABE Putative uncharacterized protein (Fragmen...    33   7.1  
tr|Q5KCK0|Q5KCK0_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.3  
tr|Q55J61|Q55J61_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.3  

>tr|A0D900|A0D900_PARTE Chromosome undetermined scaffold_41, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00014463001 PE=4 SV=1
          Length = 2189

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 30   KHLKCRTGTQIRVSGCLYGLKLSMHASWVSDVKLVTCELQ 149
            K   C + T  RV+ C     +S    W+ DV L TCE++
Sbjct: 956  KQSSCTSFTSFRVAACKIATTISAEKCWLEDVNLTTCEVR 995


>tr|Q4XTH3|Q4XTH3_PLACH Putative uncharacterized protein
           OS=Plasmodium chabaudi GN=PC000517.03.0 PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -2

Query: 130 NFTSDTQLACIDNLSP*RQPLTLICVPVRHFKCLRNW------CPTCCH 2
           N  ++    C DN     + + L C+   H+KC++NW      CP C H
Sbjct: 191 NIINEQCAVCFDNFINEDKCIKLTCLHTYHWKCVKNWFRFNLTCPCCRH 239


>tr|Q4YWD0|Q4YWD0_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB000456.02.0 PE=4 SV=1
          Length = 304

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -2

Query: 175 SGSPPCFTTCNSQVTNFTSDTQ-LACIDNLSP*RQPLTLICVPVRHFKCLRNW------C 17
           SG+      C+S++ N   + Q + C ++     + + L C    H+KC++NW      C
Sbjct: 236 SGNDFANKKCSSKIDNNIINEQCVVCFEHFINNDKCIKLTCFHTYHWKCVQNWFRFNLTC 295

Query: 16  PTCCH 2
           P C H
Sbjct: 296 PCCRH 300


>tr|Q5KCK0|Q5KCK0_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNH01290 PE=4 SV=1
          Length = 740

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = -2

Query: 175 SGSPPCFTTCNSQVTNFTSDTQLACIDNLSP*RQPLTLICVPVRHFKCLRNW------CP 14
           SG   C       ++    + +   ++   P   P  L C  V HF CLR+W      CP
Sbjct: 296 SGDRTCIICREEMISRNQREREGMQVNEGGPNETPKKLQCGHVFHFHCLRSWLERQQKCP 355

Query: 13  TC 8
           TC
Sbjct: 356 TC 357


>tr|Q55J61|Q55J61_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBL1240 PE=4 SV=1
          Length = 740

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = -2

Query: 175 SGSPPCFTTCNSQVTNFTSDTQLACIDNLSP*RQPLTLICVPVRHFKCLRNW------CP 14
           SG   C       ++    + +   ++   P   P  L C  V HF CLR+W      CP
Sbjct: 296 SGDRTCIICREEMISRNQREREGMQVNEGGPNETPKKLQCGHVFHFHCLRSWLERQQKCP 355

Query: 13  TC 8
           TC
Sbjct: 356 TC 357