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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918623
Clone id YMU001_000115_F04
Library
Length 410
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCTCATACTGATAAAAATAAGGCCAAATGGATCAATACCAAAGTGGCAGTACTTAGATC
ATCATGGTACAGAGACTCAAGAAAGTTTTATGATAACTATGCAAACTTTGATTCAGAAGC
AGAAATCTCTGAAGAAGCTGACCCTCCGAAGCAATTGGATGCTGAACAAATTCAAGCCCN
AATTAAACTTGAAGCTATAAAGAAAGCATGGTTCAATCCAATCGACAGACAAATTCAGCA
ATGGATCGATGATCCTACAAAGCTTCAAGTCTTTGCTCAAACAATAGATGATAAGCAGAC
CCATGAAAAGATCTGAGAAGAATCATCTATACGGGCAAGGAAAAAGATAAGCAACCAGAA
GAAGAATGGTTTTACCCAACAAACGCCCAACAGAAACCTCTAACAATACG
■■Homology search results ■■ -
sp_hit_id Q0U8U9
Definition sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10 OS=Phaeosphaeria nodorum
Align length 36
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918623|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_F04.
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcriptio...    31   1.7  
sp|P75400|COAE_MYCPN Dephospho-CoA kinase OS=Mycoplasma pneumoni...    31   1.7  
sp|P46743|RT04_PROWI Ribosomal protein S4, mitochondrial OS=Prot...    31   2.2  
sp|P31000|VIME_RAT Vimentin OS=Rattus norvegicus GN=Vim PE=1 SV=2      30   3.8  
sp|P20152|VIME_MOUSE Vimentin OS=Mus musculus GN=Vim PE=1 SV=3         30   3.8  
sp|P02544|VIME_MESAU Vimentin OS=Mesocricetus auratus GN=VIM PE=...    30   3.8  
sp|P48616|VIME_BOVIN Vimentin OS=Bos taurus GN=VIM PE=1 SV=3           30   3.8  
sp|A4G8E6|SYL_HERAR Leucyl-tRNA synthetase OS=Herminiimonas arse...    30   3.8  
sp|Q5R1W8|VIME_PANTR Vimentin OS=Pan troglodytes GN=VIM PE=2 SV=4      30   5.0  
sp|Q4R4X4|VIME_MACFA Vimentin OS=Macaca fascicularis GN=VIM PE=2...    30   5.0  
sp|P08670|VIME_HUMAN Vimentin OS=Homo sapiens GN=VIM PE=1 SV=4         30   5.0  
sp|P84198|VIME_CERAE Vimentin OS=Cercopithecus aethiops GN=VIM P...    30   5.0  
sp|P09654|VIME_CHICK Vimentin OS=Gallus gallus GN=VIM PE=3 SV=2        29   6.5  
sp|A6T239|SYL_JANMA Leucyl-tRNA synthetase OS=Janthinobacterium ...    29   6.5  
sp|A1JPL5|RF2_YERE8 Peptide chain release factor 2 OS=Yersinia e...    29   6.5  
sp|Q8JUX6|POLN_CHIKS Non-structural polyprotein OS=Chikungunya v...    29   6.5  
sp|Q5K2K3|L_ISFV Large structural protein OS=Isfahan virus GN=L ...    29   6.5  
sp|Q186R0|THIC_CLOD6 Thiamine biosynthesis protein thiC OS=Clost...    29   8.5  
sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharo...    29   8.5  
sp|A4R8N4|PAN1_MAGGR Actin cytoskeleton-regulatory complex prote...    29   8.5  
sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster...    29   8.5  
sp|Q15398|DLGP5_HUMAN Disks large-associated protein 5 OS=Homo s...    29   8.5  

>sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription
           subunit 10 OS=Phaeosphaeria nodorum GN=NUT2 PE=3 SV=1
          Length = 133

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 30  GSIPKWQYLDHHGTETQESFMITMQTLIQKQKSLKK 137
           G  P++Q  DH G+ TQE+    +Q+LIQ    L +
Sbjct: 8   GETPEFQSYDHRGSPTQEAMKREIQSLIQNLVKLSR 43


>sp|P75400|COAE_MYCPN Dephospho-CoA kinase OS=Mycoplasma pneumoniae
           GN=coaE PE=3 SV=1
          Length = 200

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 41  KVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXI 184
           ++AV+ + W  D R F+D     + +A+I ++A   + +D EQ+Q  I
Sbjct: 109 EIAVMLNYW-NDYRPFFDEVIQIERDAKIVKQALKARGVDVEQVQKLI 155


>sp|P46743|RT04_PROWI Ribosomal protein S4, mitochondrial
           OS=Prototheca wickerhamii GN=RPS4 PE=3 SV=1
          Length = 511

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +2

Query: 59  SSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXIKL----EAIKKAWFNPID 226
           S +  + RKF  N   FD++ EI+   D  K L  +  +   KL      +    FN  D
Sbjct: 317 SFFVSNKRKFKSNEVTFDNKKEITSAIDYTKYLQIKNSRKKYKLITLNNNLDSLSFNIFD 376

Query: 227 RQIQQWIDDPTKLQVFAQT---IDDKQTHE 307
           ++I   +     L V  Q    I++K+T++
Sbjct: 377 KEILNSLSSKQNLPVNKQNIVEIENKKTNK 406


>sp|P31000|VIME_RAT Vimentin OS=Rattus norvegicus GN=Vim PE=1 SV=2
          Length = 466

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 11  DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184
           D + A  INT+    R++   + ++  D +AN+  +    E+ +     + EQ+  Q   
Sbjct: 85  DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144

Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358
           +L  + +     + RQ+ Q  +D  +++V    +  D  +  EK+ EE   R   + + Q
Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 204

Query: 359 KKNGFTQQTPNRNL 400
               F Q   N +L
Sbjct: 205 ---SFRQDVDNASL 215


>sp|P20152|VIME_MOUSE Vimentin OS=Mus musculus GN=Vim PE=1 SV=3
          Length = 466

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 11  DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184
           D + A  INT+    R++   + ++  D +AN+  +    E+ +     + EQ+  Q   
Sbjct: 85  DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144

Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358
           +L  + +     + RQ+ Q  +D  +++V    +  D  +  EK+ EE   R   + + Q
Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 204

Query: 359 KKNGFTQQTPNRNL 400
               F Q   N +L
Sbjct: 205 ---SFRQDVDNASL 215


>sp|P02544|VIME_MESAU Vimentin OS=Mesocricetus auratus GN=VIM PE=1
           SV=2
          Length = 465

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 11  DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184
           D + A  INT+    R++   + ++  D +AN+  +    E+ +     + EQ+  Q   
Sbjct: 84  DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 143

Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358
           +L  + +     + RQ+ Q  +D  +++V    +  D  +  EK+ EE   R   + + Q
Sbjct: 144 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 203

Query: 359 KKNGFTQQTPNRNL 400
               F Q   N +L
Sbjct: 204 ---SFRQDVDNASL 214


>sp|P48616|VIME_BOVIN Vimentin OS=Bos taurus GN=VIM PE=1 SV=3
          Length = 466

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 11  DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184
           D + A  INT+    R++   + ++  D +AN+  +    E+ +     + EQ+  Q   
Sbjct: 85  DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144

Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358
           +L  + +     + RQ+ Q  +D  +++V    +  D  +  EK+ EE   R   + + Q
Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQ 204

Query: 359 KKNGFTQQTPNRNL 400
               F Q   N +L
Sbjct: 205 ---SFRQDVDNASL 215


>sp|A4G8E6|SYL_HERAR Leucyl-tRNA synthetase OS=Herminiimonas
           arsenicoxydans GN=leuS PE=3 SV=1
          Length = 881

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 200 KKAWFNPIDRQIQQWIDDPTKLQVFAQTIDDKQTHEKI*EESSIRARKKISNQKKNGFTQ 379
           KK WFNP D Q++  +DD  +  V A   +D+Q  E       I   +K+S  K NG   
Sbjct: 600 KKTWFNPADVQLE--LDDKGR-PVSAILNNDRQPVE-------IGGTEKMSKSKNNGIDP 649

Query: 380 Q 382
           Q
Sbjct: 650 Q 650


>sp|Q5R1W8|VIME_PANTR Vimentin OS=Pan troglodytes GN=VIM PE=2 SV=4
          Length = 466

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 11  DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184
           D + A  INT+    R++   + ++  D +AN+  +    E+ +     + EQ+  Q   
Sbjct: 85  DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144

Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQTI--DDKQTHEKI*EESSIRARKKISNQ 358
           +L  + +     + RQ+ Q  +D  +++V    +  D  +  EK+ EE   R   + + Q
Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 204

Query: 359 KKNGFTQQTPNRNL 400
               F Q   N +L
Sbjct: 205 ---SFRQDVDNASL 215


>sp|Q4R4X4|VIME_MACFA Vimentin OS=Macaca fascicularis GN=VIM PE=2
           SV=3
          Length = 466

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 11  DKNKAKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQI--QAXI 184
           D + A  INT+    R++   + ++  D +AN+  +    E+ +     + EQ+  Q   
Sbjct: 85  DFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS 144

Query: 185 KLEAIKKAWFNPIDRQIQQWIDDPTKLQVFAQ--TIDDKQTHEKI*EESSIRARKKISNQ 358
           +L  + +     + RQ+ Q  +D  +++V     T D  +  EK+ EE   R   + + Q
Sbjct: 145 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAENTLQ 204

Query: 359 KKNGFTQQTPNRNL 400
               F Q   N +L
Sbjct: 205 ---SFRQDVDNASL 215
tr_hit_id Q886J0
Definition tr|Q886J0|Q886J0_PSESM Lipoprotein, putative OS=Pseudomonas syringae pv. tomato
Align length 100
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918623|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_F04.
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q886J0|Q886J0_PSESM Lipoprotein, putative OS=Pseudomonas syri...    36   1.1  
tr|A4QY64|A4QY64_MAGGR Putative uncharacterized protein OS=Magna...    35   2.5  
tr|A6CNN3|A6CNN3_9BACI Hydrolase, alpha/beta fold family protein...    33   7.1  
tr|Q4RRN7|Q4RRN7_TETNG Chromosome 16 SCAF15002, whole genome sho...    33   9.3  
tr|A7GGD8|A7GGD8_CLOBL Recombinase, phage RecT family OS=Clostri...    33   9.3  
tr|B4N8L6|B4N8L6_DROWI GK12087 OS=Drosophila willistoni GN=GK120...    33   9.3  

>tr|Q886J0|Q886J0_PSESM Lipoprotein, putative OS=Pseudomonas
           syringae pv. tomato GN=PSPTO1589 PE=4 SV=1
          Length = 287

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
 Frame = +2

Query: 23  AKWINTKVAVLRSSWYRDSRKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXIKLEAIK 202
           +++ + +V  ++ S+ +D RK  + Y +   E +I+E AD  ++     I    KL  ++
Sbjct: 120 SRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRLTPWIG---KLNQVQ 176

Query: 203 K----AWFNPIDRQIQQWIDDPTKLQ-VFAQTIDDKQTHE 307
           K    AW   +  Q + WID+ T+ Q +F  T+  +Q  +
Sbjct: 177 KDRIQAWSASLGEQNKAWIDNRTRWQNLFLATVQQRQASD 216


>tr|A4QY64|A4QY64_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_08483 PE=4 SV=1
          Length = 159

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +2

Query: 80  RKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXIKLEAIKKAWFNPIDRQIQQWIDDPT 259
           R+    ++ F+SE E +EEA     L  E      +L   KK WF  + R + + IDD  
Sbjct: 7   RRIASQHSRFESELEAAEEARRAADLKVE------RLRKQKKLWFEKMMRAVSRGIDDLE 60

Query: 260 KLQ 268
           +L+
Sbjct: 61  ELE 63


>tr|A6CNN3|A6CNN3_9BACI Hydrolase, alpha/beta fold family protein
           OS=Bacillus sp. SG-1 GN=BSG1_08346 PE=4 SV=1
          Length = 290

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 319 FSDLFMGLLIIYCLSKDLKLCRIID-PLLNLSVD--WIEPCFLYSFKFNXGLN 170
           + +L  G++++   S DLKL   +D P++N   D  WIE C  Y+ K    LN
Sbjct: 96  YPELVKGMVLVDSTSVDLKLLDELDLPVMNKESDEVWIEKCHQYALKTKAELN 148


>tr|Q4RRN7|Q4RRN7_TETNG Chromosome 16 SCAF15002, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00030088001 PE=4 SV=1
          Length = 401

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -2

Query: 391 VGRLLGKTILLLVAYLFPCPYR*FFSDLFMGLLIIYCLSKDLKLCRIIDPLLNLSVDWIE 212
           VG +L + IL+L  +  PC     +  L     I+ C+S+D ++ RI    +N  +  I 
Sbjct: 47  VGVILQRGILILFLFCIPC-----WGFLINSEAILLCMSQDREVARIAQVYINAFLPAIP 101

Query: 211 PCFLYSFK 188
             FLY+ +
Sbjct: 102 VFFLYNLQ 109


>tr|A7GGD8|A7GGD8_CLOBL Recombinase, phage RecT family
           OS=Clostridium botulinum (strain Langeland / NCTC 10281
           / Type F) GN=CLI_2614 PE=4 SV=1
          Length = 267

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 74  DSRKFYDNYANFD--SEAEISEEADPPKQLDAEQIQAXIKLEA 196
           + +K Y+  + FD  S+ E+ EEA P + +D E+++   K+EA
Sbjct: 222 EQQKTYEEASEFDVKSDEEVKEEASPFENVDFEEVEEGSKIEA 264


>tr|B4N8L6|B4N8L6_DROWI GK12087 OS=Drosophila willistoni GN=GK12087
           PE=4 SV=1
          Length = 908

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
 Frame = +2

Query: 71  RDSRKFYDNYANFDSEAEISEEADPPKQLDAEQIQAXIKLEAIKKAWFNPIDRQIQQWID 250
           ++S K+  N ++   E ++  +A   +Q   EQI   +K    +K   NP++  I+  I 
Sbjct: 3   KESLKYIINNSDTIFEEQLQIQA---RQRICEQISRRLKGIEFEKPKNNPVNEVIEDEIV 59

Query: 251 DPTK--------------LQVFA--QTIDDKQTHEKI*EESSIRARKKISNQKKN 367
           D TK              L++FA  +T+ D Q  E    + SI   +K + +KKN
Sbjct: 60  DATKLPALFLQEIENCFGLEIFANQKTLQDDQEKETNQTKESIGQPEKCTEEKKN 114