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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918628
Clone id YMU001_000115_F10
Library
Length 500
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAAATACTCTAGTAGCCACACCATTTACTATGTCTAGCTTTGATAATCGAAGGTGTGGTA
TAGCTTTTGGGTGTATGGTGGGTGTGAAAAATGTAATTTCTACCGCCCGAAAGGATACCA
ACTATACCACCCAAGTGCATTGCCCGTTCATTCAGTACGGGTGCGAGCATGTTGGCCAAG
GTGATCATTGAGGGGACAATATAATGTACTTTGGTTTGATCACGCCTTATGGCTTGTACT
CCACAACCTCCCCTCATTCTTCCCGGCCTCCTCGCTCAAGAAATTCACGATTGCATTTCT
TAGTTGGGTAGAAAAGGAAGCACAAGAGCCCATCAAAGTCCCGTTAGTCCACTTCTGCTA
TCGACAAAAGCTCAAGGATGCAATTTCCCTCTCGATCTTATTCAACCAAGCTCCTCCTAC
CTTCAACCCTAAGTTGGAATCCGATAACTTCATTCTAGCTGTCATTGCATCTGGAAAAAC
ATCCCAAGATGTTCAGTCGA
■■Homology search results ■■ -
sp_hit_id Q6LXQ9
Definition sp|Q6LXQ9|ENGB_METMP Probable GTP-binding protein engB OS=Methanococcus maripaludis
Align length 34
Score (bit) 30.4
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918628|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_F10.
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6LXQ9|ENGB_METMP Probable GTP-binding protein engB OS=Methan...    30   4.8  
sp|A0KF84|HUTI_AERHH Imidazolonepropionase OS=Aeromonas hydrophi...    30   6.3  
sp|Q5HSF9|AROC_CAMJR Chorismate synthase OS=Campylobacter jejuni...    30   8.2  
sp|A1W1N6|AROC_CAMJJ Chorismate synthase OS=Campylobacter jejuni...    30   8.2  
sp|Q9PM41|AROC_CAMJE Chorismate synthase OS=Campylobacter jejuni...    30   8.2  
sp|A7H5Y1|AROC_CAMJD Chorismate synthase OS=Campylobacter jejuni...    30   8.2  
sp|A8FNU6|AROC_CAMJ8 Chorismate synthase OS=Campylobacter jejuni...    30   8.2  
sp|A1VXU6|ARGC_CAMJJ N-acetyl-gamma-glutamyl-phosphate reductase...    30   8.2  

>sp|Q6LXQ9|ENGB_METMP Probable GTP-binding protein engB
           OS=Methanococcus maripaludis GN=engB PE=3 SV=1
          Length = 230

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +2

Query: 296 FLSWVEKEAQEPIKVPLVHFCYRQKLKDAISLSI 397
           F+  +EK+AQE IK  ++H  Y +  KDAI+ SI
Sbjct: 92  FMEGIEKKAQEKIKDEIIH--YVEDNKDAIAASI 123


>sp|A0KF84|HUTI_AERHH Imidazolonepropionase OS=Aeromonas hydrophila
           subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=hutI
           PE=1 SV=2
          Length = 411

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 116 YQLYHPSALPVHSVRVRACWPR*SLRGQYNVLWFD 220
           Y L  P AL VH  R+ A  P   L+G Y   W D
Sbjct: 27  YGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQD 61


>sp|Q5HSF9|AROC_CAMJR Chorismate synthase OS=Campylobacter jejuni
           (strain RM1221) GN=aroC PE=3 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 137 HLGGIVGILSGGRNYIFHTHHTPKSYTTPSIIKARHS 27
           H GGI+G +S G N I  T+  P    TPSI   + S
Sbjct: 272 HSGGILGGISNGENLILKTYFKP----TPSIFAKQES 304


>sp|A1W1N6|AROC_CAMJJ Chorismate synthase OS=Campylobacter jejuni
           subsp. jejuni serotype O:23/36 (strain 81-176) GN=aroC
           PE=3 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 137 HLGGIVGILSGGRNYIFHTHHTPKSYTTPSIIKARHS 27
           H GGI+G +S G N I  T+  P    TPSI   + S
Sbjct: 272 HSGGILGGISNGENLILKTYFKP----TPSIFAKQES 304


>sp|Q9PM41|AROC_CAMJE Chorismate synthase OS=Campylobacter jejuni
           GN=aroC PE=1 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 137 HLGGIVGILSGGRNYIFHTHHTPKSYTTPSIIKARHS 27
           H GGI+G +S G N I  T+  P    TPSI   + S
Sbjct: 272 HSGGILGGISNGENLILKTYFKP----TPSIFAKQES 304


>sp|A7H5Y1|AROC_CAMJD Chorismate synthase OS=Campylobacter jejuni
           subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)
           GN=aroC PE=3 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 137 HLGGIVGILSGGRNYIFHTHHTPKSYTTPSIIKARHS 27
           H GGI+G +S G N I  T+  P    TPSI   + S
Sbjct: 272 HSGGILGGISNGENLILKTYFKP----TPSIFAKQES 304


>sp|A8FNU6|AROC_CAMJ8 Chorismate synthase OS=Campylobacter jejuni
           subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
           GN=aroC PE=3 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 137 HLGGIVGILSGGRNYIFHTHHTPKSYTTPSIIKARHS 27
           H GGI+G +S G N I  T+  P    TPSI   + S
Sbjct: 272 HSGGILGGISNGENLILKTYFKP----TPSIFAKQES 304


>sp|A1VXU6|ARGC_CAMJJ N-acetyl-gamma-glutamyl-phosphate reductase
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=argC PE=3 SV=1
          Length = 342

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 281 KFTIAFL---SWVEKEAQEPIKVPLVHFCYRQKLKDAISLSILFNQAPPTFNPKLESDNF 451
           K  I++L   S V +  Q+     L++ C+  K  D + L +LF   P  F+ KL ++N 
Sbjct: 27  KVEISYLGSSSSVGQNYQDLYPNTLLNLCFENKNLDELELDLLFLATPHEFSAKLLNENL 86

Query: 452 I 454
           +
Sbjct: 87  L 87
tr_hit_id A9RHX6
Definition tr|A9RHX6|A9RHX6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 74
Score (bit) 37.4
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918628|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_F10.
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RHX6|A9RHX6_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.39 
tr|B7K718|B7K718_9CHRO Putative uncharacterized protein OS=Cyano...    35   2.6  
tr|Q55EJ7|Q55EJ7_DICDI Putative uncharacterized protein OS=Dicty...    34   3.3  
tr|A9KNJ2|A9KNJ2_CLOPH Putative uncharacterized protein OS=Clost...    34   4.4  
tr|A8UXI8|A8UXI8_9AQUI Putative uncharacterized protein OS=Hydro...    34   4.4  
tr|A1K5L7|A1K5L7_AZOSB Single-stranded-DNA-specific exonuclease ...    33   7.4  
tr|Q9NWG3|Q9NWG3_HUMAN cDNA FLJ10043 fis, clone HEMBA1001085 OS=...    33   7.4  

>tr|A9RHX6|A9RHX6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159226 PE=4 SV=1
          Length = 570

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 203 NVLWFDHALWLVLHNLPSFF--PASSLKKFTIAFLSWVEKEAQEPIKVPLVHFCYRQKLK 376
           +V+W+DHA+W +++ L  FF     +L     AF  W+    +  +K  L  F +R+ L 
Sbjct: 373 SVIWWDHAMWFMINRLELFFGDEYPTLTSKLAAFWIWISSSGKVAVKSHLT-FAFRRDLM 431

Query: 377 DAISLSILFNQAPP 418
               +    NQ  P
Sbjct: 432 LEGVIEFAHNQTGP 445


>tr|B7K718|B7K718_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. PCC 7424 GN=PCC7424_4351 PE=4 SV=1
          Length = 184

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 241 PQPPLILPGLLAQEIHDCIS*LGRKGSTRAHQSPVSPLLLSTKAQGCNFPLDLIQPSSSY 420
           PQ P+ LPG ++ + HDCI  +   G + A ++ +  L +        + + L +  SSY
Sbjct: 46  PQSPIALPGKISLDNHDCIHVILGLGVSLADEALILGLTMGNDTNTKEWQVKLFKFISSY 105

Query: 421 LQP 429
           L P
Sbjct: 106 LYP 108


>tr|Q55EJ7|Q55EJ7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0190090 PE=4 SV=1
          Length = 622

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -1

Query: 203 YIVPSMI--TLANMLAPVLNERAMHLGGIVGILSGGRNY 93
           Y++P ++   L N+L P   ++ +H G + GIL+GG N+
Sbjct: 343 YVLPQVLHRLLENLLFPTFAKKVLHQGSLSGILTGGSNF 381


>tr|A9KNJ2|A9KNJ2_CLOPH Putative uncharacterized protein
           OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
           18823 / ISDg) GN=Cphy_2749 PE=3 SV=1
          Length = 135

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = -2

Query: 97  ITFFTPTIHPKAIPHLRLSKL-------DIVNG 20
           +T FTP +H K IPH+R+ KL       D VNG
Sbjct: 22  LTVFTPAVHEKMIPHVRVEKLTRETFPFDYVNG 54


>tr|A8UXI8|A8UXI8_9AQUI Putative uncharacterized protein
          OS=Hydrogenivirga sp. 128-5-R1-1 GN=HG1285_08874 PE=4
          SV=1
          Length = 531

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 21 PFTMSSFDNRRCGIAFGC 74
          P T+ SFD++RCGI FGC
Sbjct: 9  PLTVKSFDSQRCGICFGC 26


>tr|A1K5L7|A1K5L7_AZOSB Single-stranded-DNA-specific exonuclease
           OS=Azoarcus sp. (strain BH72) GN=recJ PE=4 SV=1
          Length = 563

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
 Frame = -1

Query: 242 GVQAIRRDQTKVHYIVPSMITLANMLAPVLNERAMHL---------------GGIVGILS 108
           GV+A+R     VHY+VP  +TL   L P + E A  L                GI    +
Sbjct: 91  GVRALRAFGADVHYLVPDRVTLGYGLTPAMVEIAARLEPDVLITVDNGIASVEGIAAARA 150

Query: 107 GGRNYIFHTHHTP 69
            G   I   HH P
Sbjct: 151 HGMATIITDHHLP 163


>tr|Q9NWG3|Q9NWG3_HUMAN cDNA FLJ10043 fis, clone HEMBA1001085
           OS=Homo sapiens PE=2 SV=1
          Length = 157

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 245 NLPSFFPASSLKKFTIAFLSWVEKEAQEPIKVPLVHF 355
           +LPSFFP +S   F+ A L++ E EA  P  VP   F
Sbjct: 91  HLPSFFPTASGLSFSAATLTFSEAEAPSPTFVPPTFF 127