BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918639|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_G09.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04839|GFD1_YEAST mRNA transport factor GFD1 OS=Saccharomyces...    33   0.65 
sp|Q06SF2|RPOC2_STIHE DNA-directed RNA polymerase subunit beta''...    31   4.2  

>sp|Q04839|GFD1_YEAST mRNA transport factor GFD1 OS=Saccharomyces
           cerevisiae GN=GFD1 PE=1 SV=1
          Length = 188

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 193 KPFRKRK*NKHAFHNSKWITNQSSIQSRKKVVNEAVCKKGSENSK 59
           KP  KR  N    +NS+W    SS   +K  VN+    KG+  SK
Sbjct: 20  KPSHKRSNNNKKNNNSRWSNESSSNNKKKDSVNKVKNNKGNHESK 64


>sp|Q06SF2|RPOC2_STIHE DNA-directed RNA polymerase subunit beta''
            OS=Stigeoclonium helveticum GN=rpoC2 PE=3 SV=1
          Length = 2430

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
 Frame = -1

Query: 380  FNLSFEKCFSPSLPFTLCSKKRLKN-------AFTSSNTGKLQSYFHPSI-DVVIKLIHT 225
            F+L  +K FS   PF   SK + KN       +F  S  GK    F PS+   V KL+  
Sbjct: 783  FSLPSKKTFS-YYPFAYFSKIKEKNGGRETKSSFAMSGWGKKSLSFFPSLASDVPKLLSD 841

Query: 224  MYAHIQNHA*QTFQKTKMKQACISQ 150
             Y   +    ++F+K ++K +  SQ
Sbjct: 842  FYPTSKKRNFKSFEKKELKLSSFSQ 866

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918639|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_G09.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5VQ21|B5VQ21_YEAS6 YMR255Wp-like protein OS=Saccharomyces ce...    33   6.9  
tr|B3LME3|B3LME3_YEAS1 mRNA transport factor GFD1 OS=Saccharomyc...    33   6.9  
tr|A6ZMX0|A6ZMX0_YEAS7 Conserved protein OS=Saccharomyces cerevi...    33   6.9  
tr|Q9HEH2|Q9HEH2_NEUCR Related to GTPase activating protein OS=N...    33   9.0  
tr|Q7S7T4|Q7S7T4_NEUCR Putative uncharacterized protein OS=Neuro...    33   9.0  

>tr|B5VQ21|B5VQ21_YEAS6 YMR255Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_133920 PE=4
           SV=1
          Length = 188

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 193 KPFRKRK*NKHAFHNSKWITNQSSIQSRKKVVNEAVCKKGSENSK 59
           KP  KR  N    +NS+W    SS   +K  VN+    KG+  SK
Sbjct: 20  KPSHKRSNNNKKNNNSRWSNESSSNNKKKDSVNKVKNNKGNHESK 64


>tr|B3LME3|B3LME3_YEAS1 mRNA transport factor GFD1 OS=Saccharomyces
           cerevisiae (strain RM11-1a) GN=SCRG_02150 PE=4 SV=1
          Length = 188

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 193 KPFRKRK*NKHAFHNSKWITNQSSIQSRKKVVNEAVCKKGSENSK 59
           KP  KR  N    +NS+W    SS   +K  VN+    KG+  SK
Sbjct: 20  KPSHKRSNNNKKNNNSRWSNESSSNNKKKDSVNKVKNNKGNHESK 64


>tr|A6ZMX0|A6ZMX0_YEAS7 Conserved protein OS=Saccharomyces
           cerevisiae (strain YJM789) GN=GFD1 PE=4 SV=1
          Length = 188

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 193 KPFRKRK*NKHAFHNSKWITNQSSIQSRKKVVNEAVCKKGSENSK 59
           KP  KR  N    +NS+W    SS   +K  VN+    KG+  SK
Sbjct: 20  KPSHKRSNNNKKNNNSRWSNESSSNNKKKDSVNKVKNNKGNHESK 64


>tr|Q9HEH2|Q9HEH2_NEUCR Related to GTPase activating protein
           OS=Neurospora crassa GN=2E4.120 PE=4 SV=2
          Length = 602

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 515 IQTFLQSTPTREMGEND--AILQTLYYKRTLKKGKNCRLSQDAQGSAFNLSFE 363
           I  FLQS PTRE  E D   +L   Y  ++L KG +  L       A +L+F+
Sbjct: 549 IMMFLQSLPTREWTEKDIELLLSEAYIWQSLFKGSSAHLKGQPSSRANSLNFQ 601


>tr|Q7S7T4|Q7S7T4_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU04241 PE=4 SV=2
          Length = 577

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 515 IQTFLQSTPTREMGEND--AILQTLYYKRTLKKGKNCRLSQDAQGSAFNLSFE 363
           I  FLQS PTRE  E D   +L   Y  ++L KG +  L       A +L+F+
Sbjct: 524 IMMFLQSLPTREWTEKDIELLLSEAYIWQSLFKGSSAHLKGQPSSRANSLNFQ 576