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NBDC - LSDB Archive
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BP918641
Clone id YMU001_000115_G11
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAACACATTGCGGAACTCTTGAATGGTTCTTAGATCTTCCACATGCTCTGGCAACATGT
AATCTGGATTCCAATTCTCTGCATCAATTTCAAACCTGTATGTCCTGTCAAACTCTTTTT
TCTTCATCTTGATTGAATCAACTTTCTGAGATTCTATCCAAACAGCATCCATGCCATCTT
CACCATAAAGGAATTGAATGACATCACCGAGAGAGTTACGGACTGTTCCGTCATACTTTA
CCATAACATCCTCCATAGCTTTGACTAACCTCCTCTGAATGTAACCTGTTTCAGAAGTTT
TTACGGCTGTATCAATAAGCCCCTCTCTACCTCCCATTGCATGAAAGAAGAACTCCTGAG
GTGTGAGCCCTCTCAGGTAGGAGTTCTCCACAAAACCACGACTTTCTGGCCCATAATCAT
CCTTTGTAAAGTGTGGCAGAGTTCTATCAACAAATCCATAGGGGATACGTTTTCCTTCTA
CGTTTTGCTGCCCCACACAAGCAATCATTTGCGA
■■Homology search results ■■ -
sp_hit_id P18616
Definition sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
Align length 166
Score (bit) 308.0
E-value 7.0e-84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918641|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_G11.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1...   308   7e-84
sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1...   254   2e-67
sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1...   234   2e-61
sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1...   233   3e-61
sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1...   230   2e-60
sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1...   230   2e-60
sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1...   230   2e-60
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1...   227   3e-59
sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1...   227   3e-59
sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1...   224   2e-58
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1...   215   1e-55
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1...   215   1e-55
sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1...   196   7e-50
sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB...   176   5e-44
sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB...   176   5e-44
sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc...   168   1e-41
sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC...   165   1e-40
sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC...   165   1e-40
sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC...   165   1e-40
sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC...   164   2e-40
sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc...   163   4e-40
sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC...   160   4e-39
sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=...   159   7e-39
sp|Q9HM79|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=...   159   7e-39
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC...   156   6e-38
sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC...   155   1e-37
sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=...   154   3e-37
sp|P15349|RPOA1_HALMO DNA-directed RNA polymerase subunit A' (Fr...   149   5e-36
sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=...   148   2e-35
sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=...   145   1e-34

>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1
            OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=2
          Length = 1840

 Score =  308 bits (790), Expect = 7e-84
 Identities = 146/166 (87%), Positives = 157/166 (94%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIP+GF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 779  SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 838

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 839  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 898

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK EFDRT+++EID ENWNP Y+  EH+EDL+ I+E
Sbjct: 899  ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRE 944


>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1
            OS=Dictyostelium discoideum GN=polr2a PE=2 SV=2
          Length = 1727

 Score =  254 bits (648), Expect = 2e-67
 Identities = 120/162 (74%), Positives = 138/162 (85%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM+ACVGQQNVEGKRIP+GF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 768  SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMEDV +KYD TVRNSLGDVIQF YGEDG+D  ++
Sbjct: 828  GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFV 887

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLR 14
            E+Q +DS++    E +R YR ++D  ++   +M P  +E +R
Sbjct: 888  ENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVR 929


>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1
            OS=Ashbya gossypii GN=RPB1 PE=3 SV=1
          Length = 1745

 Score =  234 bits (597), Expect = 2e-61
 Identities = 112/154 (72%), Positives = 130/154 (84%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            +QM ACVGQQ+VEGKRI +GF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAM
Sbjct: 759  AQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGT RNSLG++IQF+YGEDGMDA  I
Sbjct: 819  GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHI 878

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYML 38
            E Q +D+I      F++ YR ++     NP+Y L
Sbjct: 879  EKQSIDTIPGSDLAFEKRYRIDL----LNPNYAL 908


>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1
            (Fragments) OS=Pichia guilliermondii GN=RPB1 PE=3 SV=2
          Length = 1579

 Score =  233 bits (595), Expect = 3e-61
 Identities = 114/155 (73%), Positives = 129/155 (83%), Gaps = 1/155 (0%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQ VEGKRIP+GF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM
Sbjct: 591  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 650

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGT RNSLGD+IQF+YGEDG+D   +
Sbjct: 651  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQV 710

Query: 139  ESQKVDSIKMKKKEFDRTYRFE-IDAENWNPDYML 38
            ESQ VD I    + F+R YR + +D E    D +L
Sbjct: 711  ESQSVDVIPGTDESFERRYRVDLLDPEKCIRDSLL 745


>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1
            OS=Saccharomyces cerevisiae GN=RPB1 PE=1 SV=2
          Length = 1733

 Score =  230 bits (587), Expect = 2e-60
 Identities = 109/143 (76%), Positives = 125/143 (87%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            +QM ACVGQQ+VEGKRI +GFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAM
Sbjct: 759  AQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YD T RNSLG+VIQF+YGEDGMDA  I
Sbjct: 819  GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHI 878

Query: 139  ESQKVDSIKMKKKEFDRTYRFEI 71
            E Q +D+I      F++ YR ++
Sbjct: 879  EKQSLDTIGGSDAAFEKRYRVDL 901


>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1
            OS=Schizosaccharomyces pombe GN=rpb1 PE=1 SV=1
          Length = 1752

 Score =  230 bits (587), Expect = 2e-60
 Identities = 111/166 (66%), Positives = 136/166 (81%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQ VEGKRIP+GF  RTLPHF KDD  PESRGF+ENSYLRGLTPQEFFFHAM
Sbjct: 765  SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
             GREGLIDTAVKT+ETGYIQRRLVKAMEDVMV+YDGTVRN++GD+IQF YGEDG+DA  +
Sbjct: 825  AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLV 884

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            E Q  DS+++  K+F++ YR ++  E+ +    +   +E+  ++Q+
Sbjct: 885  EYQVFDSLRLSTKQFEKKYRIDL-MEDRSLSLYMENSIENDSSVQD 929


>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1
            OS=Plasmodium falciparum (isolate CDC / Honduras) GN=RPII
            PE=3 SV=1
          Length = 2452

 Score =  230 bits (587), Expect = 2e-60
 Identities = 109/154 (70%), Positives = 127/154 (82%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQ+I+CVGQQNVEGKRIP+GF  R+LPHF K DYGPESRGFV NSYL GLTPQE FFHAM
Sbjct: 919  SQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAM 978

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREG+IDTA KTSETGYIQRRL+KAMEDVMV+YD TVRNS GD+IQFLYGEDGM   +I
Sbjct: 979  GGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYI 1038

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYML 38
            E Q +D +K+  KE ++ Y++  D E +  DY +
Sbjct: 1039 EDQIIDLMKLDNKEINKLYKYNFDEEPFGKDYYI 1072


>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1
            OS=Caenorhabditis elegans GN=ama-1 PE=1 SV=2
          Length = 1852

 Score =  227 bits (578), Expect = 3e-59
 Identities = 110/167 (65%), Positives = 133/167 (79%), Gaps = 1/167 (0%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQ+IACVGQQNVEGKRIP+GF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 831

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKT+ETGYIQRRL+KAME VMV YDGTVRNSL  ++Q  YGEDG+D +W+
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 891

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVED-LRTIQE 2
            E+Q + ++K     F+R +R ++     +  ++   + ED +R IQE
Sbjct: 892  ENQNMPTMKPNNAVFERDFRMDLT----DNKFLRKNYSEDVVREIQE 934


>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1
            OS=Caenorhabditis briggsae GN=ama-1 PE=3 SV=2
          Length = 1853

 Score =  227 bits (578), Expect = 3e-59
 Identities = 110/167 (65%), Positives = 133/167 (79%), Gaps = 1/167 (0%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQ+IACVGQQNVEGKRIP+GF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAM
Sbjct: 776  SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAM 835

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKT+ETGYIQRRL+KAME VMV YDGTVRNSL  ++Q  YGEDG+D +W+
Sbjct: 836  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWV 895

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVED-LRTIQE 2
            E+Q + ++K     F+R +R ++     +  ++   + ED +R IQE
Sbjct: 896  ENQNMPTMKPNNAVFERDFRMDLT----DNKFLRKNYSEDVVREIQE 938


>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1
            OS=Drosophila melanogaster GN=RpII215 PE=1 SV=4
          Length = 1887

 Score =  224 bits (570), Expect = 2e-58
 Identities = 110/170 (64%), Positives = 130/170 (76%), Gaps = 4/170 (2%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQ+IACVGQQNVEGKRIPYGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKT+ETGYIQRRL+KAME VMV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELV 893

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWN----PDYMLPEHVEDLRTIQE 2
            E Q + ++K+  K F++ ++F+   E        D ++ E  +    IQE
Sbjct: 894  EFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQE 943
tr_hit_id Q71ET3
Definition tr|Q71ET3|Q71ET3_PSINU DNA-directed RNA polymerase (Fragment) OS=Psilotum nudum
Align length 166
Score (bit) 326.0
E-value 3.0e-88
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918641|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_G11.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q71ET3|Q71ET3_PSINU DNA-directed RNA polymerase (Fragment) OS...   326   3e-88
tr|A7NVN7|A7NVN7_VITVI DNA-directed RNA polymerase OS=Vitis vini...   322   6e-87
tr|B7SNW9|B7SNW9_ILLPA RNA polymerase II largest subunit (Fragme...   321   1e-86
tr|Q71ET6|Q71ET6_MAGSO DNA-directed RNA polymerase (Fragment) OS...   320   2e-86
tr|B7SNX0|B7SNX0_LIRTU RNA polymerase II largest subunit (Fragme...   320   2e-86
tr|B7SNW7|B7SNW7_CERDE RNA polymerase II largest subunit (Fragme...   320   2e-86
tr|B7SNW6|B7SNW6_BETVU RNA polymerase II largest subunit (Fragme...   320   2e-86
tr|Q71ET7|Q71ET7_MAIZE DNA-directed RNA polymerase (Fragment) OS...   317   2e-85
tr|B8BAW1|B8BAW1_ORYSI Putative uncharacterized protein OS=Oryza...   317   2e-85
tr|Q2TUN8|Q2TUN8_TAXCA DNA-directed RNA polymerase (Fragment) OS...   316   4e-85
tr|Q1L5Z5|Q1L5Z5_RHOMC DNA-directed RNA polymerase (Fragment) OS...   315   6e-85
tr|Q71ET9|Q71ET9_9CONI DNA-directed RNA polymerase (Fragment) OS...   315   8e-85
tr|Q71ET4|Q71ET4_AMBTC DNA-directed RNA polymerase (Fragment) OS...   315   8e-85
tr|Q2TUN9|Q2TUN9_THUOC DNA-directed RNA polymerase (Fragment) OS...   315   1e-84
tr|A3BPR9|A3BPR9_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   315   1e-84
tr|Q71EU0|Q71EU0_CYCRE DNA-directed RNA polymerase (Fragment) OS...   313   2e-84
tr|Q2TUN7|Q2TUN7_9CONI DNA-directed RNA polymerase (Fragment) OS...   313   3e-84
tr|B7SNX3|B7SNX3_PERAE RNA polymerase II largest subunit (Fragme...   313   3e-84
tr|B7SNW8|B7SNW8_DRIWI RNA polymerase II largest subunit (Fragme...   313   3e-84
tr|B7SNX5|B7SNX5_SARHE RNA polymerase II largest subunit (Fragme...   313   4e-84
tr|B7SNW5|B7SNW5_ASPOF RNA polymerase II largest subunit (Fragme...   313   4e-84
tr|Q71ET8|Q71ET8_WELMI DNA-directed RNA polymerase (Fragment) OS...   312   6e-84
tr|A9U396|A9U396_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   311   8e-84
tr|Q71EU1|Q71EU1_9SPER DNA-directed RNA polymerase (Fragment) OS...   311   1e-83
tr|Q71ET5|Q71ET5_NYMOD DNA-directed RNA polymerase (Fragment) OS...   311   1e-83
tr|B7SNX2|B7SNX2_PAPOR RNA polymerase II largest subunit (Fragme...   311   1e-83
tr|Q2TUN6|Q2TUN6_GINBI DNA-directed RNA polymerase (Fragment) OS...   310   3e-83
tr|B7SNX4|B7SNX4_PEA RNA polymerase II largest subunit (Fragment...   310   3e-83
tr|B7SNX1|B7SNX1_TOBAC RNA polymerase II largest subunit (Fragme...   307   2e-82
tr|Q1L5Y7|Q1L5Y7_ANTMA DNA-directed RNA polymerase (Fragment) OS...   306   3e-82

>tr|Q71ET3|Q71ET3_PSINU DNA-directed RNA polymerase (Fragment)
            OS=Psilotum nudum GN=RPB1 PE=2 SV=1
          Length = 1013

 Score =  326 bits (836), Expect = 3e-88
 Identities = 156/166 (93%), Positives = 162/166 (97%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQMIACVGQQNVEGKRIP+GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 699  SQMIACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVI+FLYGEDGMDAVWI
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMDAVWI 818

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMK KEFDR Y FEID+ENWNPDYML EHVEDL+TIQE
Sbjct: 819  ESQKLDSMKMKTKEFDRMYMFEIDSENWNPDYMLAEHVEDLKTIQE 864


>tr|A7NVN7|A7NVN7_VITVI DNA-directed RNA polymerase OS=Vitis
           vinifera GN=GSVIVT00015507001 PE=3 SV=1
          Length = 1010

 Score =  322 bits (825), Expect = 6e-87
 Identities = 151/166 (90%), Positives = 161/166 (96%)
 Frame = -1

Query: 499 SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
           SQM ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 14  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 73

Query: 319 GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
           GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 74  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 133

Query: 139 ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
           E+QK+DS+KMKK EFDR +++EID ENWNP YMLPEHVEDL+TI+E
Sbjct: 134 ETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIRE 179


>tr|B7SNW9|B7SNW9_ILLPA RNA polymerase II largest subunit (Fragment)
            OS=Illicium parviflorum GN=rpb1 PE=2 SV=1
          Length = 1013

 Score =  321 bits (822), Expect = 1e-86
 Identities = 150/166 (90%), Positives = 161/166 (96%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 818

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKKKEF+  +R+EID +NWNP YMLPEHV+DL+TI+E
Sbjct: 819  ESQKLDSLKMKKKEFENVFRYEIDNDNWNPSYMLPEHVKDLKTIRE 864


>tr|Q71ET6|Q71ET6_MAGSO DNA-directed RNA polymerase (Fragment)
            OS=Magnolia soulangeana GN=RPB1 PE=2 SV=1
          Length = 1010

 Score =  320 bits (820), Expect = 2e-86
 Identities = 150/166 (90%), Positives = 159/166 (95%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 815

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK+EFD  +R+E D  NWNP YMLPEHVEDL+TI+E
Sbjct: 816  ESQKLDSLKMKKREFDNVFRYEFDNANWNPSYMLPEHVEDLKTIRE 861


>tr|B7SNX0|B7SNX0_LIRTU RNA polymerase II largest subunit (Fragment)
            OS=Liriodendron tulipifera GN=rpb1 PE=2 SV=1
          Length = 1010

 Score =  320 bits (820), Expect = 2e-86
 Identities = 150/166 (90%), Positives = 159/166 (95%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 815

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK+EFD  +R+E D  NWNP YMLPEHVEDL+TI+E
Sbjct: 816  ESQKLDSLKMKKREFDNVFRYEFDNANWNPSYMLPEHVEDLKTIRE 861


>tr|B7SNW7|B7SNW7_CERDE RNA polymerase II largest subunit (Fragment)
            OS=Ceratophyllum demersum GN=rpb1 PE=2 SV=1
          Length = 1010

 Score =  320 bits (820), Expect = 2e-86
 Identities = 150/166 (90%), Positives = 159/166 (95%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 696  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 756  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 815

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK+EFD  +R+E D  NWNP YMLPEHVEDL+TI+E
Sbjct: 816  ESQKLDSLKMKKREFDNVFRYEFDNANWNPSYMLPEHVEDLKTIRE 861


>tr|B7SNW6|B7SNW6_BETVU RNA polymerase II largest subunit (Fragment)
            OS=Beta vulgaris GN=rpb1 PE=2 SV=1
          Length = 1012

 Score =  320 bits (820), Expect = 2e-86
 Identities = 150/166 (90%), Positives = 159/166 (95%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 698  SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 757

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 758  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 817

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK+EFD  +R+E D  NWNP YMLPEHVEDL+TI+E
Sbjct: 818  ESQKLDSLKMKKREFDNVFRYEFDNANWNPSYMLPEHVEDLKTIRE 863


>tr|Q71ET7|Q71ET7_MAIZE DNA-directed RNA polymerase (Fragment) OS=Zea
            mays GN=RPB1 PE=2 SV=1
          Length = 1009

 Score =  317 bits (813), Expect = 2e-85
 Identities = 148/166 (89%), Positives = 160/166 (96%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 695  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 754

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 755  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 814

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK EFD  +R+E+D ENW P+YMLPEHV+DL+TI+E
Sbjct: 815  ESQKLDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIRE 860


>tr|B8BAW1|B8BAW1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_27866 PE=4 SV=1
          Length = 1449

 Score =  317 bits (812), Expect = 2e-85
 Identities = 148/166 (89%), Positives = 160/166 (96%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 747  SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 806

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 807  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 866

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKK EFD  +R+E+D ENW P+YMLPEHV+DL+TI+E
Sbjct: 867  ESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIRE 912


>tr|Q2TUN8|Q2TUN8_TAXCA DNA-directed RNA polymerase (Fragment)
            OS=Taxus canadensis GN=rpb1 PE=2 SV=1
          Length = 1013

 Score =  316 bits (809), Expect = 4e-85
 Identities = 150/166 (90%), Positives = 158/166 (95%)
 Frame = -1

Query: 499  SQMIACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 320
            SQM ACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 699  SQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758

Query: 319  GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 140
            GGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 759  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 818

Query: 139  ESQKVDSIKMKKKEFDRTYRFEIDAENWNPDYMLPEHVEDLRTIQE 2
            ESQK+DS+KMKKKEF+  YR+EID ENWNP YMLPEHV+DL+TI+E
Sbjct: 819  ESQKLDSLKMKKKEFENVYRYEIDQENWNPSYMLPEHVDDLKTIRE 864