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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918643
Clone id YMU001_000115_H01
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACTAAATATCTTCAGCACAGTGATGATGAATTGAGAGCATTTGATACATAATTGGAGC
CCCATGAGGCACCAAACAAGAAGGGGTAAAAGGAACCATGGGCTCAGCTGCACCTGGCAT
GATAGGGATAGCAGATCATGTAGAATACAAGCCAATCAGACCCCAAGTTCCTGTGGCCTG
ATCCATTCACCCCAATAATAAGCTCAGAAGAGCTGACAAGGCAATACTTGCTGGAAGAAA
TTGGGAGAGCCCATGCACCCACAGTCGTGCATATGGAAAATGCATCTCCAGAACATCCCA
GCCTGATCGGGAACTATGTATGTTAACTGAGATCATTTGTCGCCTCCAGCGTCCAAGTCC
ATGGAATGCCGCTTCATCATGCAAGAGTCCGAAACCAGGATAGAAGACCCAAAAGGCCCT
TGTCCAGTATCGCAGATCGTCTCTCGAGGCCTATATCTGCTGCCACTCTATGTGCACACA
TGATCCCAGAAAACGCTACAGCAATAACACCTTGGCC
■■Homology search results ■■ -
sp_hit_id Q9M9Y8
Definition sp|Q9M9Y8|CRTSO_ARATH Carotenoid isomerase, chloroplastic OS=Arabidopsis thaliana
Align length 46
Score (bit) 81.3
E-value 3.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918643|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_H01.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M9Y8|CRTSO_ARATH Carotenoid isomerase, chloroplastic OS=Ara...    81   3e-15
sp|Q2VEX9|CRTSO_DAUCA Carotenoid isomerase, chloroplastic OS=Dau...    78   3e-14
sp|Q8S4R4|CRTSO_SOLLC Carotenoid isomerase, chloroplastic OS=Sol...    74   4e-13
sp|Q52QW3|CRTS1_ONCHC Carotenoid isomerase 1, chloroplastic OS=O...    72   1e-12
sp|Q52QW2|CRTS2_ONCHC Carotenoid isomerase 2, chloroplastic OS=O...    72   2e-12
sp|Q2NQ98|KUP_SODGM Low affinity potassium transport system prot...    32   1.3  
sp|Q6CSA1|MIA40_KLULA Mitochondrial intermembrane space import a...    26   2.6  
sp|Q9Z1W4|GDF11_MOUSE Growth/differentiation factor 11 OS=Mus mu...    31   3.0  
sp|O95390|GDF11_HUMAN Growth/differentiation factor 11 OS=Homo s...    31   3.0  
sp|Q9Z217|GDF11_RAT Growth/differentiation factor 11 (Fragment) ...    31   4.0  
sp|Q5E8W6|THIG_VIBF1 Thiazole biosynthesis protein thiG OS=Vibri...    30   6.7  
sp|Q9KVS4|THIG_VIBCH Thiazole biosynthesis protein thiG OS=Vibri...    30   6.7  
sp|A5F4E2|THIG_VIBC3 Thiazole biosynthesis protein thiG OS=Vibri...    30   6.7  

>sp|Q9M9Y8|CRTSO_ARATH Carotenoid isomerase, chloroplastic
           OS=Arabidopsis thaliana GN=CRTISO PE=2 SV=2
          Length = 595

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAADIGLE++S +LD GLLGLL W RTLA
Sbjct: 550 GQGVIAVAFSGVMCAHRVAADIGLEKKSRVLDVGLLGLLGWLRTLA 595


>sp|Q2VEX9|CRTSO_DAUCA Carotenoid isomerase, chloroplastic OS=Daucus
           carota GN=CRTISO PE=2 SV=1
          Length = 615

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 37/46 (80%), Positives = 41/46 (89%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAAD+GLE++S ILD  LL LL WFRTLA
Sbjct: 570 GQGVIAVAFSGVMCAHRVAADLGLEQKSPILDAALLRLLGWFRTLA 615


>sp|Q8S4R4|CRTSO_SOLLC Carotenoid isomerase, chloroplastic
           OS=Solanum lycopersicum GN=CRTISO PE=2 SV=1
          Length = 615

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAAD+G E++S +LD  LL LL W RTLA
Sbjct: 570 GQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA 615


>sp|Q52QW3|CRTS1_ONCHC Carotenoid isomerase 1, chloroplastic
           OS=Oncidium hybrid cultivar GN=CRTISO1 PE=2 SV=1
          Length = 587

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAAD+G+E+++ +LD  LL LL W RT+A
Sbjct: 542 GQGVIAVAFSGVMCAHRVAADLGIEKKAPVLDAALLRLLGWLRTVA 587


>sp|Q52QW2|CRTS2_ONCHC Carotenoid isomerase 2, chloroplastic
           OS=Oncidium hybrid cultivar GN=CRTISO2 PE=2 SV=1
          Length = 587

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAAD+G E+++ +LD  LL LL W RT+A
Sbjct: 542 GQGVIAVAFSGVMCAHRVAADLGFEKKAPVLDAALLRLLGWLRTVA 587


>sp|Q2NQ98|KUP_SODGM Low affinity potassium transport system protein
           kup OS=Sodalis glossinidius (strain morsitans) GN=kup
           PE=3 SV=1
          Length = 622

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 125 LSCQVQLSPWFLLPLLVWCLMGLQLCIKCSQFIITVLKIFS 3
           LSC V    W L  L+V  L+   LC+  S F    LKIFS
Sbjct: 381 LSCTVARKNWHLNLLIVSVLLLALLCLDVSMFAANALKIFS 421


>sp|Q6CSA1|MIA40_KLULA Mitochondrial intermembrane space import and
           assembly protein 40 OS=Kluyveromyces lactis GN=MIA40
           PE=3 SV=1
          Length = 406

 Score = 25.8 bits (55), Expect(2) = 2.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 239 NWESPCTHSRAYGKC 283
           NW+ PC    AYG C
Sbjct: 279 NWDCPCLGGMAYGPC 293



 Score = 23.5 bits (49), Expect(2) = 2.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 369 PLHHARVRNQDRRPKRPLSSIADRLSRPISAATLCAHMIPENA 497
           P ++A     +       S I D+ + P+S AT    +  ENA
Sbjct: 331 PDYYAEQIKDEEEASAEASKIEDKSTTPVSTATSTVEVQTENA 373


>sp|Q9Z1W4|GDF11_MOUSE Growth/differentiation factor 11 OS=Mus
           musculus GN=Gdf11 PE=2 SV=1
          Length = 405

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 46  IHNWSPMR--HQTRRGKRNHGLSCTWHDRDSRSCR 144
           +H +  +R    T+R +RN GL C  H  +SR CR
Sbjct: 279 LHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCR 313


>sp|O95390|GDF11_HUMAN Growth/differentiation factor 11 OS=Homo
           sapiens GN=GDF11 PE=2 SV=1
          Length = 407

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 46  IHNWSPMR--HQTRRGKRNHGLSCTWHDRDSRSCR 144
           +H +  +R    T+R +RN GL C  H  +SR CR
Sbjct: 281 LHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCR 315


>sp|Q9Z217|GDF11_RAT Growth/differentiation factor 11 (Fragment)
           OS=Rattus norvegicus GN=Gdf11 PE=2 SV=1
          Length = 345

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  TRRGKRNHGLSCTWHDRDSRSCR 144
           T+R +RN GL C  H  +SR CR
Sbjct: 237 TKRSRRNLGLDCDEHSSESRCCR 259
tr_hit_id Q2R2A6
Definition tr|Q2R2A6|Q2R2A6_ORYSJ Carotenoid isomerase, putative, expressed OS=Oryza sativa subsp. japonica
Align length 46
Score (bit) 82.4
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918643|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_H01.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2R2A6|Q2R2A6_ORYSJ Carotenoid isomerase, putative, expressed...    82   1e-14
tr|Q0IS25|Q0IS25_ORYSJ Os11g0572700 protein OS=Oryza sativa subs...    82   1e-14
tr|B8BL59|B8BL59_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|B8BL57|B8BL57_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|B0L964|B0L964_ORYSJ Putative carotenoid isomerase ZEBRA2 (Fra...    82   1e-14
tr|B6SXL7|B6SXL7_MAIZE Carotenoid isomerase OS=Zea mays PE=2 SV=1      81   3e-14
tr|A9TDT7|A9TDT7_PHYPA Predicted protein OS=Physcomitrella paten...    80   6e-14
tr|B6SYC3|B6SYC3_MAIZE Carotenoid isomerase OS=Zea mays PE=2 SV=1      80   8e-14
tr|Q2HXK3|Q2HXK3_CHRMO Carotenoid isomerase OS=Chrysanthemum mor...    79   1e-13
tr|A7Q051|A7Q051_VITVI Chromosome chr8 scaffold_41, whole genome...    76   9e-13
tr|A9T513|A9T513_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|B7XC77|B7XC77_9LILI Carotenoid isomerase (Fragment) OS=Lilium...    72   2e-11
tr|Q7U7T0|Q7U7T0_SYNPX Carotenoid isomerase OS=Synechococcus sp....    41   0.041
tr|Q3AVI3|Q3AVI3_SYNS9 Carotenoid isomerase OS=Synechococcus sp....    41   0.041
tr|Q3AJ02|Q3AJ02_SYNSC Carotenoid isomerase OS=Synechococcus sp....    41   0.041
tr|Q113A2|Q113A2_TRIEI FAD dependent oxidoreductase OS=Trichodes...    41   0.041
tr|Q05ZT9|Q05ZT9_9SYNE Carotenoid isomerase OS=Synechococcus sp....    41   0.041
tr|B4VR36|B4VR36_9CYAN Carotene isomerase OS=Microcoleus chthono...    41   0.041
tr|A3YYM6|A3YYM6_9SYNE Carotenoid isomerase OS=Synechococcus sp....    41   0.041
tr|Q8YVB4|Q8YVB4_ANASP Alr2064 protein OS=Anabaena sp. (strain P...    40   0.053
tr|Q5N5C4|Q5N5C4_SYNP6 Carotene isomerase OS=Synechococcus sp. (...    40   0.053
tr|Q3M8G6|Q3M8G6_ANAVT FAD dependent oxidoreductase OS=Anabaena ...    40   0.053
tr|Q31NU3|Q31NU3_SYNE7 Carotene isomerase OS=Synechococcus elong...    40   0.053
tr|A5GU86|A5GU86_SYNR3 Carotenoid isomerase OS=Synechococcus sp....    40   0.053
tr|B5IMV3|B5IMV3_9CHRO Carotene isomerase OS=Cyanobium sp. PCC 7...    40   0.053
tr|A3Z826|A3Z826_9SYNE Carotenoid isomerase OS=Synechococcus sp....    40   0.053
tr|B0JT14|B0JT14_MICAN Carotene isomerase OS=Microcystis aerugin...    40   0.091
tr|B1X5L6|B1X5L6_PAUCH Carotenoid isomerase OS=Paulinella chroma...    40   0.091
tr|B1WXE0|B1WXE0_CYAA5 Putative carotenoid isomerase OS=Cyanothe...    39   0.12 
tr|A3IV57|A3IV57_9CHRO Carotene isomerase OS=Cyanothece sp. CCY ...    39   0.12 

>tr|Q2R2A6|Q2R2A6_ORYSJ Carotenoid isomerase, putative, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os11g36440 PE=4
           SV=2
          Length = 586

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE+RS +LD GLLGLL W RTLA
Sbjct: 541 GQGVIAVAFSGIMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA 586


>tr|Q0IS25|Q0IS25_ORYSJ Os11g0572700 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0572700 PE=4 SV=1
          Length = 602

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE+RS +LD GLLGLL W RTLA
Sbjct: 557 GQGVIAVAFSGIMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA 602


>tr|B8BL59|B8BL59_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36559 PE=4 SV=1
          Length = 193

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE+RS +LD GLLGLL W RTLA
Sbjct: 148 GQGVIAVAFSGIMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA 193


>tr|B8BL57|B8BL57_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36549 PE=4 SV=1
          Length = 620

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE+RS +LD GLLGLL W RTLA
Sbjct: 575 GQGVIAVAFSGIMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA 620


>tr|B0L964|B0L964_ORYSJ Putative carotenoid isomerase ZEBRA2
           (Fragment) OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 464

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE+RS +LD GLLGLL W RTLA
Sbjct: 419 GQGVIAVAFSGIMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA 464


>tr|B6SXL7|B6SXL7_MAIZE Carotenoid isomerase OS=Zea mays PE=2 SV=1
          Length = 589

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 39/46 (84%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE++S +LD GLLGLL W RTLA
Sbjct: 544 GQGVIAVAFSGIMCAHRVAADIGLEQKSPVLDAGLLGLLRWLRTLA 589


>tr|A9TDT7|A9TDT7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_194048 PE=4 SV=1
          Length = 605

 Score = 80.1 bits (196), Expect = 6e-14
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG MCAHRVAAD+G E+R+A+LDKGL  LL+WFRTLA
Sbjct: 560 GQGVIAVAFSGTMCAHRVAADLGFEKRNAVLDKGLSSLLAWFRTLA 605


>tr|B6SYC3|B6SYC3_MAIZE Carotenoid isomerase OS=Zea mays PE=2 SV=1
          Length = 587

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 39/46 (84%), Positives = 41/46 (89%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSGIMCAHRVAADIGLE++S  LD GLLGLL W RTLA
Sbjct: 542 GQGVIAVAFSGIMCAHRVAADIGLEQKSPALDAGLLGLLRWLRTLA 587


>tr|Q2HXK3|Q2HXK3_CHRMO Carotenoid isomerase OS=Chrysanthemum
           morifolium GN=CRTISO PE=2 SV=1
          Length = 641

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 35/46 (76%), Positives = 42/46 (91%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAAD+GLE++S +LD GLLG+L W R+LA
Sbjct: 596 GQGVIAVAFSGVMCAHRVAADVGLEKKSPVLDAGLLGILGWLRSLA 641


>tr|A7Q051|A7Q051_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027139001
           PE=4 SV=1
          Length = 569

 Score = 76.3 bits (186), Expect = 9e-13
 Identities = 36/46 (78%), Positives = 40/46 (86%)
 Frame = -1

Query: 517 GQGVIAVAFSGIMCAHRVAADIGLERRSAILDKGLLGLLSWFRTLA 380
           GQGVIAVAFSG+MCAHRVAADIGLE++S +LD  LL LL W RTLA
Sbjct: 524 GQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDAALLRLLGWLRTLA 569