BP918647
Clone id YMU001_000115_H05
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000115_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAATTGCAAGCAGTGGCGAGAGCTTAAGAACTCGCTCGCCACCATCCAAGGAAAGTCCCT
CTTTCAACCCAATTTCAAGAGCAGCCATTTTAGCCCCTTTTGCAGAGAAGATCGCCTCCT
CCCCGGGCCCCCTCTGCCTGCTTTACTTAGGTGAAGGTGCCTCTCAGGATAAGCTCTCCA
AGCTTTTACCCCCTACTTCAATGAGCGACAGCATGCTTCTTCTTTTTGGGCAGCAGCAAT
CGAGCATCCTCAACCATGTGGATGTGAAAAAGGCGACCTCGTTGGACCTTGTCTCAGTCT
ACCGCCGTAGTGTATTCTCCACCCTCTTCAACCCTATGGTTTTCTTTTCGGGCCTTGACA
GAATGAAAAGTATCAGCGAATCGGGGAGTGCCGCTTCTGCAAATGAAGAGGTGAGCAGTA
CAGCCCCAAGCTGATCCAGATCTTTACATCATTCTTTGGTGAGAGAGCTTTAGTTGTTAA
TATGTTCAAGTTCTAGTCTAGCTGTAACCTCCAAAACGTTATTCCATTTT
■■Homology search results ■■ -
sp_hit_id P38450
Definition sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha
Align length 80
Score (bit) 74.3
E-value 1.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918647|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_H05.
(530 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1... 74 1e-18
sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio ... 32 2.5
sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomy... 32 2.5
sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila ... 31 4.2
sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Ara... 31 4.2
sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilag... 30 5.5
sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1 30 7.2
sp|O54705|NOS2_CAVPO Nitric oxide synthase, inducible OS=Cavia p... 30 7.2
sp|A4X4N7|IF2_SALTO Translation initiation factor IF-2 OS=Salini... 30 7.2
sp|P30995|BXE_CLOBU Botulinum neurotoxin type E OS=Clostridium b... 30 7.2
sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium b... 30 7.2
sp|Q96AP0|ACD_HUMAN Adrenocortical dysplasia protein homolog OS=... 30 7.2
sp|Q1LTT4|TPIS_BAUCH Triosephosphate isomerase OS=Baumannia cica... 30 9.4
sp|P50643|RIR1_SUHVK Ribonucleoside-diphosphate reductase large ... 30 9.4
sp|A8M746|IF2_SALAI Translation initiation factor IF-2 OS=Salini... 30 9.4

>sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1
OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1
Length = 168

Score = 74.3 bits (181), Expect(2) = 1e-18
Identities = 35/80 (43%), Positives = 57/80 (71%)
Frame = +3

Query: 108 KIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKATSLD 287
++ASS GP C+LYL + A + S+LLP S S +++LL+GQ +S++ NH+D+KKAT+L+
Sbjct: 79 QLASSAGPTCILYLAKEAPNNTWSQLLPSASYSQNLVLLYGQDRSTVFNHMDIKKATTLE 138

Query: 288 LVSVYRRSVFSTLFNPMVFF 347
SV+++ +F +F P F
Sbjct: 139 TTSVFQQ-LFGFMFLPGACF 157



Score = 38.5 bits (88), Expect(2) = 1e-18
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2

Query: 8 KQWRELKNSLATIQGKSLFQPNFKSSHFSP 97
+QWR++KN L TI+GK+LF+P K + P
Sbjct: 41 RQWRQIKNILCTIKGKTLFKPKEKKQNILP 70


>sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio
rerio GN=arhgap29 PE=2 SV=1
Length = 1337

Score = 31.6 bits (70), Expect = 2.5
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3

Query: 9 SSGESLRTRSPPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKLL 188
SS + L R PPS PS +S + + ASSPGP + + A KL KL
Sbjct: 635 SSADDLDEREPPS---PSDTGLSEMVM------ETASSPGPFRNAQMSKAAHTHKLRKLR 685

Query: 189 PPTSM--SDSMLLLFGQQ 236
P+ DS+++ G +
Sbjct: 686 APSKCRECDSLVVFHGAE 703


>sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomyces
cerevisiae GN=FIG2 PE=2 SV=2
Length = 1609

Score = 31.6 bits (70), Expect = 2.5
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Frame = +3

Query: 54 SPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKLLP-------------- 191
SPS ++ ++L+P E ++SS G L L + + D+ SK +P
Sbjct: 224 SPSSKNSNQTSLLSPL-EPLSSSSGDLILSSTIQATTNDQTSKTIPTLVDATSSLPPTLR 282

Query: 192 -----PTSMSDSMLLLFGQQQSSILNHVDVKKATSLD 287
PTS SDS+ F S + DV + S+D
Sbjct: 283 SSSMAPTSGSDSISHNFTSPPSKTSGNYDVLTSNSID 319


>sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila
virilis GN=salm PE=2 SV=1
Length = 1402

Score = 30.8 bits (68), Expect = 4.2
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3

Query: 114 ASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSS--ILNHVDVKKATSLD 287
A S G ++ + +SQD L+KL ++M L FG SS I NH D+ + SLD
Sbjct: 332 AKSSGASAKIFGEQESSQDALNKL----KEMENMPLPFGADLSSSIITNHDDLPEPNSLD 387

Query: 288 LVSVYRRSVFST 323
L+ + V +
Sbjct: 388 LLQKRTQEVLDS 399


>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3
OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2
Length = 419

Score = 30.8 bits (68), Expect = 4.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3

Query: 6 ASSGESLRTRSPPSKESPSFNPISRAAILAPFAEKIASSPGP 131
AS+G S PPS PS +P + A++ AP A P P
Sbjct: 87 ASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPP 128


>sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago
maydis GN=SEC24 PE=3 SV=1
Length = 995

Score = 30.4 bits (67), Expect = 5.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3

Query: 39 PPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQ 167
PP PS +PIS+ AP + A SP P +G GAS+
Sbjct: 72 PPGMRGPSLSPISQHGPGAPVSPPSAGSPAPAS---IGPGASR 111


>sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1
Length = 322

Score = 30.0 bits (66), Expect = 7.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3

Query: 258 VDVKKATSLDLVSVYRRSVFSTLFNPMVFFSGLD 359
+++ ATSL+ +++ RRS TLFNP + LD
Sbjct: 153 LEITPATSLEALTMARRSGVKTLFNPAPAIADLD 186


>sp|O54705|NOS2_CAVPO Nitric oxide synthase, inducible OS=Cavia
porcellus GN=NOS2 PE=2 SV=1
Length = 1149

Score = 30.0 bits (66), Expect = 7.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3

Query: 69 PISRAAILAPFAEKIASSPGP---LCLLYLGEGASQDKLSKLLPPTSMSDSM 215
P ++ A++ E + +PGP +CL L + S K LPP S+S ++
Sbjct: 776 PCNQPALVQGILECVVDNPGPHHTVCLEVLDDSGSYWAKDKRLPPCSLSQAL 827


>sp|A4X4N7|IF2_SALTO Translation initiation factor IF-2
OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818
/ CNB-440) GN=infB PE=3 SV=1
Length = 999

Score = 30.0 bits (66), Expect = 7.2
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3

Query: 72 ISRAAILAPFAEKIASSPGPLC--LLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSS 245
+SR A L+ FA+KI ++PG L + LGE + + S SD LLL G+
Sbjct: 406 LSRGASLSDFADKINANPGSLVQEMFNLGEMVTATQ--------SCSDDTLLLLGEHLGF 457

Query: 246 ILNHV 260
++ V
Sbjct: 458 VVQIV 462


>sp|P30995|BXE_CLOBU Botulinum neurotoxin type E OS=Clostridium
butyricum PE=1 SV=2
Length = 1251

Score = 30.0 bits (66), Expect = 7.2
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -2

Query: 439 LDQLGAVLLTSSFAEAALPDSLILFI---LSRPEKKTIGLKRVENTLRR*TETRSNEVAF 269
L+ LGA +L E +P L+ I L + K +K + N L+ E +F
Sbjct: 625 LELLGAGILLEFEPELLIPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSF 684

Query: 268 FTSTWLRMLDCCCPKRRSML 209
S W+ ++ KR+ +
Sbjct: 685 IVSNWMTKINTQFNKRKEQM 704


tr_hit_id Q1XGB8
Definition tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 OS=Physcomitrella patens
Align length 79
Score (bit) 74.3
E-value 1.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918647|Adiantum capillus-veneris mRNA, clone:
YMU001_000115_H05.
(530 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 O... 74 1e-17
tr|Q5M9S8|Q5M9S8_TOBAC Putative uncharacterized protein orf159b ... 56 1e-06
tr|B6VJT3|B6VJT3_VITVI Orf159 protein OS=Vitis vinifera GN=orf15... 51 4e-05
tr|B2JLX4|B2JLX4_BURP8 Integral membrane sensor hybrid histidine... 38 0.28
tr|Q854W8|Q854W8_9CAUD Gp29 OS=Mycobacterium phage Che9c GN=29 P... 35 1.8
tr|B6KIS3|B6KIS3_TOXGO Putative uncharacterized protein OS=Toxop... 35 1.8
tr|A8XHM9|A8XHM9_CAEBR Putative uncharacterized protein OS=Caeno... 35 1.8
tr|B7R2R6|B7R2R6_9EURY Transporter, major facilitator family OS=... 35 1.8
tr|B0UJQ2|B0UJQ2_METS4 Putative uncharacterized protein OS=Methy... 34 4.0
tr|B2TBZ0|B2TBZ0_BURPP Integral membrane sensor hybrid histidine... 34 5.3
tr|B3DLN8|B3DLN8_XENTR LOC100170512 protein OS=Xenopus tropicali... 33 6.9
tr|B4LQF1|B4LQF1_DROVI Spalt major OS=Drosophila virilis GN=Dvir... 33 6.9
tr|Q4RWT8|Q4RWT8_TETNG Chromosome 15 SCAF14981, whole genome sho... 33 9.0
tr|B4KMZ4|B4KMZ4_DROMO GI18796 OS=Drosophila mojavensis GN=GI187... 33 9.0

>tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187
OS=Physcomitrella patens GN=ORF187 PE=4 SV=1
Length = 187

Score = 74.3 bits (181), Expect(2) = 1e-17
Identities = 34/79 (43%), Positives = 58/79 (73%)
Frame = +3

Query: 99 FAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKAT 278
F E++A S GP C+LYL + A + S+LLP S + +++LL+GQ QS+++NH+D+KKA
Sbjct: 68 FIEQLAYSAGPTCILYLTKEAPDNTWSQLLPSASYNQNLVLLYGQLQSTLVNHMDIKKAA 127

Query: 279 SLDLVSVYRRSVFSTLFNP 335
+L++ SV+++ +F +F P
Sbjct: 128 NLEITSVFQQ-LFELIFYP 145



Score = 38.5 bits (88), Expect(2) = 1e-17
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2

Query: 8 KQWRELKNSLATIQGKSLFQPNFK 79
+QWR+LKN L +G++LFQPN+K
Sbjct: 33 RQWRQLKNLLCAFRGRTLFQPNYK 56


>tr|Q5M9S8|Q5M9S8_TOBAC Putative uncharacterized protein orf159b
OS=Nicotiana tabacum GN=orf159b PE=4 SV=1
Length = 159

Score = 56.2 bits (134), Expect = 1e-06
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = +3

Query: 99 FAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKAT 278
F ++A S GP C+ YL E AS D+L L SM +LLL+GQ +S++++H+DV+KA+
Sbjct: 66 FFAQLAHSAGPTCISYLAEEAS-DRLEFLPSWDSMDQDLLLLYGQYRSTLVDHMDVEKAS 124

Query: 279 SLD 287
+LD
Sbjct: 125 NLD 127


>tr|B6VJT3|B6VJT3_VITVI Orf159 protein OS=Vitis vinifera GN=orf159
PE=4 SV=1
Length = 158

Score = 50.8 bits (120), Expect = 4e-05
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = +3

Query: 99 FAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKAT 278
F ++A S GP C+ YL E AS D+L L SM +L L+GQ +S++++H+DV+KA
Sbjct: 66 FFAQLAHSAGPTCISYLAEEAS-DRLEFLRSWDSMDQDLLSLYGQYRSTLVDHMDVEKAF 124

Query: 279 SLD 287
D
Sbjct: 125 HFD 127


>tr|B2JLX4|B2JLX4_BURP8 Integral membrane sensor hybrid histidine
kinase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=Bphy_5115 PE=4 SV=1
Length = 609

Score = 38.1 bits (87), Expect = 0.28
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +1

Query: 211 ACFFFLGSSNRASSTMWM*KRRPRWTLSQST---------AVVYSPPSSTLWFSFRA 354
ACF F G +N AS +WM RR +S T A++Y+ P +WF+F++
Sbjct: 52 ACFIFYGFANCASLALWMCNRRWPEAVSPRTWINLHAARGALLYAAPGLAIWFAFQS 108


>tr|Q854W8|Q854W8_9CAUD Gp29 OS=Mycobacterium phage Che9c GN=29 PE=4
SV=1
Length = 132

Score = 35.4 bits (80), Expect = 1.8
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = -2

Query: 427 GAVLLTSSFAEAALPDSLILFILSRPEKKTIGLKRVENTLRR*TETRSNEVAFFTSTWLR 248
G +L+S A AA+ SLIL I++R + ++VEN R R N +A TS W +
Sbjct: 5 GPAILSSGIAGAAV--SLILAIMNRRHTNALA-RQVENAAEREEVERDNLLAEATSKWSK 61

Query: 247 MLD 239
+LD
Sbjct: 62 LLD 64


>tr|B6KIS3|B6KIS3_TOXGO Putative uncharacterized protein
OS=Toxoplasma gondii ME49 GN=TGME49_002150 PE=4 SV=1
Length = 843

Score = 35.4 bits (80), Expect = 1.8
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Frame = +3

Query: 21 SLRTRSPPSKESPSFNP-----ISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKL 185
S SPPS SPS +P SR+ +L P + +++SP P G+ +Q+ S+
Sbjct: 298 STSASSPPSSSSPSSSPSSSPSTSRSCLLTPLSSSLSASPSPSSSRDRGDVRAQNAQSRF 357

Query: 186 LPPTSMS-------DSMLLLFGQQQSSILNHVDVKKATSL 284
+ S DS + QQ+S+ VDV +T L
Sbjct: 358 QGRRAASGISEAEADSPRVAHTQQESA----VDVSDSTVL 393


>tr|A8XHM9|A8XHM9_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG13484 PE=4 SV=2
Length = 471

Score = 35.4 bits (80), Expect = 1.8
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3

Query: 9 SSGESLRTRSPPSKESP--SFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSK 182
S G+S+R+RSPP +P + P+ + P + + ++P PL + Q +LS
Sbjct: 382 SDGDSVRSRSPPEAATPKATRTPVPTTPVHHPSSPAMPTTPTPLSV------QIQSQLSA 435

Query: 183 LLPPTSMSD 209
+PPT D
Sbjct: 436 PMPPTPFKD 444


>tr|B7R2R6|B7R2R6_9EURY Transporter, major facilitator family
OS=Thermococcus sp. AM4 GN=TAM4_167 PE=4 SV=1
Length = 386

Score = 35.4 bits (80), Expect = 1.8
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +3

Query: 27 RTRSPPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGE--GASQDKLSKLLPPTS 200
R + P ESPS NP I + A +A + G + +Y+ E G S+++ + LL T
Sbjct: 193 RKKKTPDGESPSLNPKRVLTIASLMAVIVAFTSGEITYVYVSEALGLSKERTAVLLGWTG 252

Query: 201 MSDSMLLLFGQQQSSILNHVDVKKATSL 284
++L F + + + + K T+L
Sbjct: 253 FLSALLSYFVSWLADVRSEARMVKLTAL 280


>tr|B0UJQ2|B0UJQ2_METS4 Putative uncharacterized protein
OS=Methylobacterium sp. (strain 4-46) GN=M446_2554 PE=4
SV=1
Length = 407

Score = 34.3 bits (77), Expect = 4.0
Identities = 28/96 (29%), Positives = 37/96 (38%)
Frame = +3

Query: 9 SSGESLRTRSPPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKLL 188
S G+S SPP+ +PS N R A A PG L GEGA+ S L
Sbjct: 250 SGGDS--APSPPAGGAPSSNAARRTTTEAKIAANARREPGETGTLVPGEGAAPKPTSSLA 307

Query: 189 PPTSMSDSMLLLFGQQQSSILNHVDVKKATSLDLVS 296
+ D+ L G + + K A DL +
Sbjct: 308 GVAEVVDTATLRLGGRTLRLFGVETAKGAQPEDLAT 343


>tr|B2TBZ0|B2TBZ0_BURPP Integral membrane sensor hybrid histidine
kinase OS=Burkholderia phytofirmans (strain DSM 17436 /
PsJN) GN=Bphyt_4849 PE=4 SV=1
Length = 655

Score = 33.9 bits (76), Expect = 5.3
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +1

Query: 211 ACFFFLGSSNRASSTMWM*KRR------PR-WTLSQST--AVVYSPPSSTLWFSFRA 354
ACF F ++N AS +W+ RR PR W + + ++YS P +WF+F++
Sbjct: 52 ACFGFYAAANCASLALWLVNRRYPQLVSPRGWIILHAVRGMLLYSGPGIAVWFAFQS 108