BP918647 |
Clone id |
YMU001_000115_H05 |
Library |
YMU01 |
Length |
530 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000115_H05. |
Accession |
BP918647 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3739Contig1 |
Sequence |
CAATTGCAAGCAGTGGCGAGAGCTTAAGAACTCGCTCGCCACCATCCAAGGAAAGTCCCT CTTTCAACCCAATTTCAAGAGCAGCCATTTTAGCCCCTTTTGCAGAGAAGATCGCCTCCT CCCCGGGCCCCCTCTGCCTGCTTTACTTAGGTGAAGGTGCCTCTCAGGATAAGCTCTCCA AGCTTTTACCCCCTACTTCAATGAGCGACAGCATGCTTCTTCTTTTTGGGCAGCAGCAAT CGAGCATCCTCAACCATGTGGATGTGAAAAAGGCGACCTCGTTGGACCTTGTCTCAGTCT ACCGCCGTAGTGTATTCTCCACCCTCTTCAACCCTATGGTTTTCTTTTCGGGCCTTGACA GAATGAAAAGTATCAGCGAATCGGGGAGTGCCGCTTCTGCAAATGAAGAGGTGAGCAGTA CAGCCCCAAGCTGATCCAGATCTTTACATCATTCTTTGGTGAGAGAGCTTTAGTTGTTAA TATGTTCAAGTTCTAGTCTAGCTGTAACCTCCAAAACGTTATTCCATTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P38450 |
Definition |
sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha |
Align length |
80 |
Score (bit) |
74.3 |
E-value |
1.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918647|Adiantum capillus-veneris mRNA, clone: YMU001_000115_H05. (530 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1... 74 1e-18 sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio ... 32 2.5 sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomy... 32 2.5 sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila ... 31 4.2 sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Ara... 31 4.2 sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilag... 30 5.5 sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1 30 7.2 sp|O54705|NOS2_CAVPO Nitric oxide synthase, inducible OS=Cavia p... 30 7.2 sp|A4X4N7|IF2_SALTO Translation initiation factor IF-2 OS=Salini... 30 7.2 sp|P30995|BXE_CLOBU Botulinum neurotoxin type E OS=Clostridium b... 30 7.2 sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium b... 30 7.2 sp|Q96AP0|ACD_HUMAN Adrenocortical dysplasia protein homolog OS=... 30 7.2 sp|Q1LTT4|TPIS_BAUCH Triosephosphate isomerase OS=Baumannia cica... 30 9.4 sp|P50643|RIR1_SUHVK Ribonucleoside-diphosphate reductase large ... 30 9.4 sp|A8M746|IF2_SALAI Translation initiation factor IF-2 OS=Salini... 30 9.4
>sp|P38450|YMF01_MARPO Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1 Length = 168
Score = 74.3 bits (181), Expect(2) = 1e-18 Identities = 35/80 (43%), Positives = 57/80 (71%) Frame = +3
Query: 108 KIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKATSLD 287 ++ASS GP C+LYL + A + S+LLP S S +++LL+GQ +S++ NH+D+KKAT+L+ Sbjct: 79 QLASSAGPTCILYLAKEAPNNTWSQLLPSASYSQNLVLLYGQDRSTVFNHMDIKKATTLE 138
Query: 288 LVSVYRRSVFSTLFNPMVFF 347 SV+++ +F +F P F Sbjct: 139 TTSVFQQ-LFGFMFLPGACF 157
Score = 38.5 bits (88), Expect(2) = 1e-18 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = +2
Query: 8 KQWRELKNSLATIQGKSLFQPNFKSSHFSP 97 +QWR++KN L TI+GK+LF+P K + P Sbjct: 41 RQWRQIKNILCTIKGKTLFKPKEKKQNILP 70
>sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio rerio GN=arhgap29 PE=2 SV=1 Length = 1337
Score = 31.6 bits (70), Expect = 2.5 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +3
Query: 9 SSGESLRTRSPPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKLL 188 SS + L R PPS PS +S + + ASSPGP + + A KL KL Sbjct: 635 SSADDLDEREPPS---PSDTGLSEMVM------ETASSPGPFRNAQMSKAAHTHKLRKLR 685
Query: 189 PPTSM--SDSMLLLFGQQ 236 P+ DS+++ G + Sbjct: 686 APSKCRECDSLVVFHGAE 703
>sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomyces cerevisiae GN=FIG2 PE=2 SV=2 Length = 1609
Score = 31.6 bits (70), Expect = 2.5 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 19/97 (19%) Frame = +3
Query: 54 SPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKLLP-------------- 191 SPS ++ ++L+P E ++SS G L L + + D+ SK +P Sbjct: 224 SPSSKNSNQTSLLSPL-EPLSSSSGDLILSSTIQATTNDQTSKTIPTLVDATSSLPPTLR 282
Query: 192 -----PTSMSDSMLLLFGQQQSSILNHVDVKKATSLD 287 PTS SDS+ F S + DV + S+D Sbjct: 283 SSSMAPTSGSDSISHNFTSPPSKTSGNYDVLTSNSID 319
>sp|P39806|SALM_DROVI Homeotic protein spalt-major OS=Drosophila virilis GN=salm PE=2 SV=1 Length = 1402
Score = 30.8 bits (68), Expect = 4.2 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +3
Query: 114 ASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSS--ILNHVDVKKATSLD 287 A S G ++ + +SQD L+KL ++M L FG SS I NH D+ + SLD Sbjct: 332 AKSSGASAKIFGEQESSQDALNKL----KEMENMPLPFGADLSSSIITNHDDLPEPNSLD 387
Query: 288 LVSVYRRSVFST 323 L+ + V + Sbjct: 388 LLQKRTQEVLDS 399
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2 Length = 419
Score = 30.8 bits (68), Expect = 4.2 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3
Query: 6 ASSGESLRTRSPPSKESPSFNPISRAAILAPFAEKIASSPGP 131 AS+G S PPS PS +P + A++ AP A P P Sbjct: 87 ASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPP 128
>sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago maydis GN=SEC24 PE=3 SV=1 Length = 995
Score = 30.4 bits (67), Expect = 5.5 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +3
Query: 39 PPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQ 167 PP PS +PIS+ AP + A SP P +G GAS+ Sbjct: 72 PPGMRGPSLSPISQHGPGAPVSPPSAGSPAPAS---IGPGASR 111
>sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1 Length = 322
Score = 30.0 bits (66), Expect = 7.2 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3
Query: 258 VDVKKATSLDLVSVYRRSVFSTLFNPMVFFSGLD 359 +++ ATSL+ +++ RRS TLFNP + LD Sbjct: 153 LEITPATSLEALTMARRSGVKTLFNPAPAIADLD 186
>sp|O54705|NOS2_CAVPO Nitric oxide synthase, inducible OS=Cavia porcellus GN=NOS2 PE=2 SV=1 Length = 1149
Score = 30.0 bits (66), Expect = 7.2 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = +3
Query: 69 PISRAAILAPFAEKIASSPGP---LCLLYLGEGASQDKLSKLLPPTSMSDSM 215 P ++ A++ E + +PGP +CL L + S K LPP S+S ++ Sbjct: 776 PCNQPALVQGILECVVDNPGPHHTVCLEVLDDSGSYWAKDKRLPPCSLSQAL 827
>sp|A4X4N7|IF2_SALTO Translation initiation factor IF-2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=infB PE=3 SV=1 Length = 999
Score = 30.0 bits (66), Expect = 7.2 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3
Query: 72 ISRAAILAPFAEKIASSPGPLC--LLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSS 245 +SR A L+ FA+KI ++PG L + LGE + + S SD LLL G+ Sbjct: 406 LSRGASLSDFADKINANPGSLVQEMFNLGEMVTATQ--------SCSDDTLLLLGEHLGF 457
Query: 246 ILNHV 260 ++ V Sbjct: 458 VVQIV 462
>sp|P30995|BXE_CLOBU Botulinum neurotoxin type E OS=Clostridium butyricum PE=1 SV=2 Length = 1251
Score = 30.0 bits (66), Expect = 7.2 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Frame = -2
Query: 439 LDQLGAVLLTSSFAEAALPDSLILFI---LSRPEKKTIGLKRVENTLRR*TETRSNEVAF 269 L+ LGA +L E +P L+ I L + K +K + N L+ E +F Sbjct: 625 LELLGAGILLEFEPELLIPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSF 684
Query: 268 FTSTWLRMLDCCCPKRRSML 209 S W+ ++ KR+ + Sbjct: 685 IVSNWMTKINTQFNKRKEQM 704
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1XGB8 |
Definition |
tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 OS=Physcomitrella patens |
Align length |
79 |
Score (bit) |
74.3 |
E-value |
1.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918647|Adiantum capillus-veneris mRNA, clone: YMU001_000115_H05. (530 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 O... 74 1e-17 tr|Q5M9S8|Q5M9S8_TOBAC Putative uncharacterized protein orf159b ... 56 1e-06 tr|B6VJT3|B6VJT3_VITVI Orf159 protein OS=Vitis vinifera GN=orf15... 51 4e-05 tr|B2JLX4|B2JLX4_BURP8 Integral membrane sensor hybrid histidine... 38 0.28 tr|Q854W8|Q854W8_9CAUD Gp29 OS=Mycobacterium phage Che9c GN=29 P... 35 1.8 tr|B6KIS3|B6KIS3_TOXGO Putative uncharacterized protein OS=Toxop... 35 1.8 tr|A8XHM9|A8XHM9_CAEBR Putative uncharacterized protein OS=Caeno... 35 1.8 tr|B7R2R6|B7R2R6_9EURY Transporter, major facilitator family OS=... 35 1.8 tr|B0UJQ2|B0UJQ2_METS4 Putative uncharacterized protein OS=Methy... 34 4.0 tr|B2TBZ0|B2TBZ0_BURPP Integral membrane sensor hybrid histidine... 34 5.3 tr|B3DLN8|B3DLN8_XENTR LOC100170512 protein OS=Xenopus tropicali... 33 6.9 tr|B4LQF1|B4LQF1_DROVI Spalt major OS=Drosophila virilis GN=Dvir... 33 6.9 tr|Q4RWT8|Q4RWT8_TETNG Chromosome 15 SCAF14981, whole genome sho... 33 9.0 tr|B4KMZ4|B4KMZ4_DROMO GI18796 OS=Drosophila mojavensis GN=GI187... 33 9.0
>tr|Q1XGB8|Q1XGB8_PHYPA Putative uncharacterized protein ORF187 OS=Physcomitrella patens GN=ORF187 PE=4 SV=1 Length = 187
Score = 74.3 bits (181), Expect(2) = 1e-17 Identities = 34/79 (43%), Positives = 58/79 (73%) Frame = +3
Query: 99 FAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKAT 278 F E++A S GP C+LYL + A + S+LLP S + +++LL+GQ QS+++NH+D+KKA Sbjct: 68 FIEQLAYSAGPTCILYLTKEAPDNTWSQLLPSASYNQNLVLLYGQLQSTLVNHMDIKKAA 127
Query: 279 SLDLVSVYRRSVFSTLFNP 335 +L++ SV+++ +F +F P Sbjct: 128 NLEITSVFQQ-LFELIFYP 145
Score = 38.5 bits (88), Expect(2) = 1e-17 Identities = 14/24 (58%), Positives = 20/24 (83%) Frame = +2
Query: 8 KQWRELKNSLATIQGKSLFQPNFK 79 +QWR+LKN L +G++LFQPN+K Sbjct: 33 RQWRQLKNLLCAFRGRTLFQPNYK 56
>tr|Q5M9S8|Q5M9S8_TOBAC Putative uncharacterized protein orf159b OS=Nicotiana tabacum GN=orf159b PE=4 SV=1 Length = 159
Score = 56.2 bits (134), Expect = 1e-06 Identities = 29/63 (46%), Positives = 44/63 (69%) Frame = +3
Query: 99 FAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKAT 278 F ++A S GP C+ YL E AS D+L L SM +LLL+GQ +S++++H+DV+KA+ Sbjct: 66 FFAQLAHSAGPTCISYLAEEAS-DRLEFLPSWDSMDQDLLLLYGQYRSTLVDHMDVEKAS 124
Query: 279 SLD 287 +LD Sbjct: 125 NLD 127
>tr|B6VJT3|B6VJT3_VITVI Orf159 protein OS=Vitis vinifera GN=orf159 PE=4 SV=1 Length = 158
Score = 50.8 bits (120), Expect = 4e-05 Identities = 27/63 (42%), Positives = 40/63 (63%) Frame = +3
Query: 99 FAEKIASSPGPLCLLYLGEGASQDKLSKLLPPTSMSDSMLLLFGQQQSSILNHVDVKKAT 278 F ++A S GP C+ YL E AS D+L L SM +L L+GQ +S++++H+DV+KA Sbjct: 66 FFAQLAHSAGPTCISYLAEEAS-DRLEFLRSWDSMDQDLLSLYGQYRSTLVDHMDVEKAF 124
Query: 279 SLD 287 D Sbjct: 125 HFD 127
>tr|B2JLX4|B2JLX4_BURP8 Integral membrane sensor hybrid histidine kinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=Bphy_5115 PE=4 SV=1 Length = 609
Score = 38.1 bits (87), Expect = 0.28 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%) Frame = +1
Query: 211 ACFFFLGSSNRASSTMWM*KRRPRWTLSQST---------AVVYSPPSSTLWFSFRA 354 ACF F G +N AS +WM RR +S T A++Y+ P +WF+F++ Sbjct: 52 ACFIFYGFANCASLALWMCNRRWPEAVSPRTWINLHAARGALLYAAPGLAIWFAFQS 108
>tr|Q854W8|Q854W8_9CAUD Gp29 OS=Mycobacterium phage Che9c GN=29 PE=4 SV=1 Length = 132
Score = 35.4 bits (80), Expect = 1.8 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = -2
Query: 427 GAVLLTSSFAEAALPDSLILFILSRPEKKTIGLKRVENTLRR*TETRSNEVAFFTSTWLR 248 G +L+S A AA+ SLIL I++R + ++VEN R R N +A TS W + Sbjct: 5 GPAILSSGIAGAAV--SLILAIMNRRHTNALA-RQVENAAEREEVERDNLLAEATSKWSK 61
Query: 247 MLD 239 +LD Sbjct: 62 LLD 64
>tr|B6KIS3|B6KIS3_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 GN=TGME49_002150 PE=4 SV=1 Length = 843
Score = 35.4 bits (80), Expect = 1.8 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 12/100 (12%) Frame = +3
Query: 21 SLRTRSPPSKESPSFNP-----ISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKL 185 S SPPS SPS +P SR+ +L P + +++SP P G+ +Q+ S+ Sbjct: 298 STSASSPPSSSSPSSSPSSSPSTSRSCLLTPLSSSLSASPSPSSSRDRGDVRAQNAQSRF 357
Query: 186 LPPTSMS-------DSMLLLFGQQQSSILNHVDVKKATSL 284 + S DS + QQ+S+ VDV +T L Sbjct: 358 QGRRAASGISEAEADSPRVAHTQQESA----VDVSDSTVL 393
>tr|A8XHM9|A8XHM9_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae GN=CBG13484 PE=4 SV=2 Length = 471
Score = 35.4 bits (80), Expect = 1.8 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +3
Query: 9 SSGESLRTRSPPSKESP--SFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSK 182 S G+S+R+RSPP +P + P+ + P + + ++P PL + Q +LS Sbjct: 382 SDGDSVRSRSPPEAATPKATRTPVPTTPVHHPSSPAMPTTPTPLSV------QIQSQLSA 435
Query: 183 LLPPTSMSD 209 +PPT D Sbjct: 436 PMPPTPFKD 444
>tr|B7R2R6|B7R2R6_9EURY Transporter, major facilitator family OS=Thermococcus sp. AM4 GN=TAM4_167 PE=4 SV=1 Length = 386
Score = 35.4 bits (80), Expect = 1.8 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = +3
Query: 27 RTRSPPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGE--GASQDKLSKLLPPTS 200 R + P ESPS NP I + A +A + G + +Y+ E G S+++ + LL T Sbjct: 193 RKKKTPDGESPSLNPKRVLTIASLMAVIVAFTSGEITYVYVSEALGLSKERTAVLLGWTG 252
Query: 201 MSDSMLLLFGQQQSSILNHVDVKKATSL 284 ++L F + + + + K T+L Sbjct: 253 FLSALLSYFVSWLADVRSEARMVKLTAL 280
>tr|B0UJQ2|B0UJQ2_METS4 Putative uncharacterized protein OS=Methylobacterium sp. (strain 4-46) GN=M446_2554 PE=4 SV=1 Length = 407
Score = 34.3 bits (77), Expect = 4.0 Identities = 28/96 (29%), Positives = 37/96 (38%) Frame = +3
Query: 9 SSGESLRTRSPPSKESPSFNPISRAAILAPFAEKIASSPGPLCLLYLGEGASQDKLSKLL 188 S G+S SPP+ +PS N R A A PG L GEGA+ S L Sbjct: 250 SGGDS--APSPPAGGAPSSNAARRTTTEAKIAANARREPGETGTLVPGEGAAPKPTSSLA 307
Query: 189 PPTSMSDSMLLLFGQQQSSILNHVDVKKATSLDLVS 296 + D+ L G + + K A DL + Sbjct: 308 GVAEVVDTATLRLGGRTLRLFGVETAKGAQPEDLAT 343
>tr|B2TBZ0|B2TBZ0_BURPP Integral membrane sensor hybrid histidine kinase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_4849 PE=4 SV=1 Length = 655
Score = 33.9 bits (76), Expect = 5.3 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%) Frame = +1
Query: 211 ACFFFLGSSNRASSTMWM*KRR------PR-WTLSQST--AVVYSPPSSTLWFSFRA 354 ACF F ++N AS +W+ RR PR W + + ++YS P +WF+F++ Sbjct: 52 ACFGFYAAANCASLALWLVNRRYPQLVSPRGWIILHAVRGMLLYSGPGIAVWFAFQS 108
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