| BP918653 |
| Clone id |
YMU001_000116_A04 |
| Library |
YMU01 |
| Length |
555 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000116_A04. |
| Accession |
BP918653 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
AACTTGTTCTACCCTTTGTCGGGATACAACTTGATACTGTCTACAGAAACGATATAAACC
TGATAAATAACCTCAATTAGAAAAAATTCGGACTTCTTAGCTGCAATATACAGTTGATAC
TCATCTAAACGGGCTAAAACCTTCTCTACATCCCGTTCATGCTACTCCCATGATGTAGAA
AAAATGAGAATGTCATGTAGAAAAATACACACATGCCGATCATGTCACCAAAATGACCTA
TGATGAGACAGTTTGAAAGTACCCTCGGCTGTCAATCCAAAAGGCATTAACAACATATTT
CCACTGCCCTCGCTCGGTGCGAAGGCAGTTGGGTATAGATGTCTCCCTTGAATACCCTTA
CCTGATGGTATCCACTCTTGAGATCAACTTCACTGAAAACCTTAGCTCCATTGAGTCTAT
CGAGGATATACTCAATGCGAGGCTTTCGAAACTTGTTCTTGACTGTCTTCTTGTTGAGTG
CCGTGTAATCTACACACAAACGAGAAGACCCATCTTTCTTGCGAACAAACAAAATAAGAG
CAGCAAAAGGACTGA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q99315 |
| Definition |
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae |
| Align length |
73 |
| Score (bit) |
74.7 |
| E-value |
3.0e-22 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918653|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_A04.
(555 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 75 3e-22
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 75 3e-22
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 55 4e-15
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 53 2e-14
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 52 1e-13
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 50 2e-13
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 59 1e-12
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 49 2e-12
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 48 3e-12
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 48 4e-12
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 48 4e-12
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ... 47 2e-11
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 67 8e-11
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 67 8e-11
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 67 8e-11
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oeno... 67 8e-11
sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot... 45 4e-10
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus... 44 1e-09
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin... 40 2e-08
sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic m... 53 9e-07
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf... 52 1e-06
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing... 39 2e-06
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing... 39 2e-06
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform vi... 37 8e-06
sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapi... 35 0.25
sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos tauru... 33 0.71
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 32 2.1
sp|P03364|POL_SMRVH Pol polyprotein OS=Squirrel monkey retroviru... 32 2.1
sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces p... 31 3.5
sp|O08679|MARK2_RAT Serine/threonine-protein kinase MARK2 OS=Rat... 31 3.5
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 74.7 bits (182), Expect(2) = 3e-22
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP ++ ++ V KKDG+ RLCVDY LNK T+ + F PRI+ +L R+ A++F+ +DL S
Sbjct: 630 SPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHS 689
Query: 373 GYHQVRVFKGDIY 335
GYHQ+ + D Y
Sbjct: 690 GYHQIPMEPKDRY 702
Score = 50.4 bits (119), Expect(2) = 3e-22
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = -2
Query: 335 YPTAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HD-RHVCIFLHDILIFSTSWE* 162
Y TAF G +MPFGL A TF +F D R V ++L DILIFS S E
Sbjct: 702 YKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF--RDLRFVNVYLDDILIFSESPEE 759
Query: 161 HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSI 33
H + ++ VL RL L + KK +F E + Y + + I
Sbjct: 760 HWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKI 802
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 74.7 bits (182), Expect(2) = 3e-22
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP ++ ++ V KKDG+ RLCVDY LNK T+ + F PRI+ +L R+ A++F+ +DL S
Sbjct: 656 SPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHS 715
Query: 373 GYHQVRVFKGDIY 335
GYHQ+ + D Y
Sbjct: 716 GYHQIPMEPKDRY 728
Score = 50.4 bits (119), Expect(2) = 3e-22
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = -2
Query: 335 YPTAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HD-RHVCIFLHDILIFSTSWE* 162
Y TAF G +MPFGL A TF +F D R V ++L DILIFS S E
Sbjct: 728 YKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF--RDLRFVNVYLDDILIFSESPEE 785
Query: 161 HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSI 33
H + ++ VL RL L + KK +F E + Y + + I
Sbjct: 786 HWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKI 828
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003
Score = 54.7 bits (130), Expect(2) = 4e-15
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGL-TAEGTFKLSHHRSFW*HDRHVC-IFLHDILIFSTSWE*HE 156
TAF+ G L +PFGL A F+ H VC +++ DI++FS ++ H
Sbjct: 236 TAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHW 295
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
+++ VLA L + L + +KS F +V + YIV+ D IK P K
Sbjct: 296 KNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKK 342
Score = 46.2 bits (108), Expect(2) = 4e-15
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = -3
Query: 553 SPFAALILFVRKK-----DGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSE 389
SP+ + I V KK + R+ VD+ LN T+ + + P I L L AK F+
Sbjct: 157 SPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTT 216
Query: 388 VDLKSGYHQVRVFKGDI 338
+DL SG+HQ+ + + DI
Sbjct: 217 LDLTSGFHQIHMKESDI 233
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1035
Score = 53.1 bits (126), Expect(2) = 2e-14
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = -3
Query: 508 SSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKSGYHQVRVFKGD 341
+ RL +D+ LN+KT+ +++ P I IL L AK F+ +DLKSGYHQ+ + + D
Sbjct: 236 NKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHD 291
Score = 45.4 bits (106), Expect(2) = 2e-14
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGL-TAEGTFKLSHHRSFW*HDRHVC-IFLHDILIFSTSWE*HE 156
T+F+ + G +PFGL A F+ + +C +++ D++IFS + H
Sbjct: 295 TSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHV 354
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
R ++ VL L + + ++ +K+ FF V Y +IVS D K P+K
Sbjct: 355 RHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEK 401
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
transposon 297 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1059
Score = 51.6 bits (122), Expect(2) = 1e-13
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGL-TAEGTFKLSHHRSFW*H-DRHVCIFLHDILIFSTSWE*HE 156
TAF+ G L MPFGL A TF+ + ++H ++L DI+IFSTS H
Sbjct: 319 TAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHL 378
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
++ V +L + L + K EF E + +IV+ D IK P K
Sbjct: 379 NSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIK 425
Score = 44.3 bits (103), Expect(2) = 1e-13
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSS-----RLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSE 389
SP+ + V KK +S R+ +DY LN+ T+ +++ P ++ IL +L + F+
Sbjct: 240 SPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTT 299
Query: 388 VDLKSGYHQVRV 353
+DL G+HQ+ +
Sbjct: 300 IDLAKGFHQIEM 311
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058
Score = 50.4 bits (119), Expect(2) = 2e-13
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGL-TAEGTFKLSHH---RSFW*HDRHVCIFLHDILIFSTSWE* 162
TAF+ G L MPFGL A TF+ + R ++H ++L DI++FSTS +
Sbjct: 320 TAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLL--NKHCLVYLDDIIVFSTSLDE 377
Query: 161 HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
H + + V +L + L + K EF E + ++++ D IK P+K
Sbjct: 378 HLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEK 426
Score = 45.1 bits (105), Expect(2) = 2e-13
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSS-----RLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSE 389
SP+ + I V KK +S R+ +DY LN+ TV ++ P ++ IL +L F+
Sbjct: 241 SPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTT 300
Query: 388 VDLKSGYHQVRV 353
+DL G+HQ+ +
Sbjct: 301 IDLAKGFHQIEM 312
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
transposon 412 OS=Drosophila melanogaster GN=POL PE=4
SV=1
Length = 1237
Score = 58.5 bits (140), Expect(2) = 1e-12
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSS------RLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFS 392
S + + +L V KK + RL +DY +NKK + +KF PRI+ ILD+L AK FS
Sbjct: 348 SQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFS 407
Query: 391 EVDLKSGYHQVRVFKG 344
+DL SG+HQ+ + +G
Sbjct: 408 CLDLMSGFHQIELDEG 423
Score = 33.9 bits (76), Expect(2) = 1e-12
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSF-W*HDRHVCIFLHDILIFSTSWE*HE 156
T+F+ S GS +PFGL A +F+ +F +++ D+++ S +
Sbjct: 428 TSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHML 487
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIY 63
+++ +V + EY L + +K FF+ EV +
Sbjct: 488 KNLTEVFGKCREYNLKLHPEKCSFFMHEVTF 518
>sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain D/H) GN=ORF V PE=3 SV=1
Length = 674
Score = 48.5 bits (114), Expect(2) = 2e-12
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -3
Query: 520 KKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKSGYHQV 359
K+ G R+ V+Y A+NK TV + + P + +L + G K+FS D KSG+ QV
Sbjct: 290 KRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQV 343
Score = 43.1 bits (100), Expect(2) = 2e-12
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HDRHVCIFLHDILIFSTSWE*HER 153
TAF +G ++PFGL A F+ +F + C+++ DIL+FS + E H
Sbjct: 353 TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLL 412
Query: 152 DVEKVLARLDEYQLYIAAKKSEFF 81
V +L + +++ + ++ KK++ F
Sbjct: 413 HVAMILQKCNQHGIILSKKKAQLF 436
>sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain Strasbourg) GN=ORF V PE=3 SV=1
Length = 679
Score = 48.1 bits (113), Expect(2) = 3e-12
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -3
Query: 520 KKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKSGYHQV 359
K+ G R+ V+Y A+NK TV + + P + +L + G K+FS D KSG+ QV
Sbjct: 295 KRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQV 348
Score = 43.1 bits (100), Expect(2) = 3e-12
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HDRHVCIFLHDILIFSTSWE*HER 153
TAF +G ++PFGL A F+ +F + C+++ DIL+FS + E H
Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLL 417
Query: 152 DVEKVLARLDEYQLYIAAKKSEFF 81
V +L + +++ + ++ KK++ F
Sbjct: 418 HVAMILQKCNQHGIILSKKKAQLF 441
>sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic
virus (strain BBC) GN=ORF V PE=3 SV=1
Length = 679
Score = 47.8 bits (112), Expect(2) = 4e-12
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = -3
Query: 520 KKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKSGYHQV 359
K+ G R+ V+Y A+NK T+ + + P + +L + G K+FS D KSG+ QV
Sbjct: 295 KRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQV 348
Score = 43.1 bits (100), Expect(2) = 4e-12
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HDRHVCIFLHDILIFSTSWE*HER 153
TAF +G ++PFGL A F+ +F + C+++ DIL+FS + E H
Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLL 417
Query: 152 DVEKVLARLDEYQLYIAAKKSEFF 81
V +L + +++ + ++ KK++ F
Sbjct: 418 HVAMILQKCNQHGIILSKKKAQLF 441
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q4QXS8 |
| Definition |
tr|Q4QXS8|Q4QXS8_HORVD Polyprotein OS=Hordeum vulgare var. distichum |
| Align length |
72 |
| Score (bit) |
92.8 |
| E-value |
1.0e-31 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918653|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_A04.
(555 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q4QXS8|Q4QXS8_HORVD Polyprotein OS=Hordeum vulgare var. disti... 93 1e-31
tr|Q5JPW2|Q5JPW2_ORYSA OSJNBa0085C10.29 protein OS=Oryza sativa ... 94 3e-30
tr|Q33AB6|Q33AB6_ORYSJ Retrotransposon protein, putative, Ty3-gy... 91 6e-30
tr|Q8W1D1|Q8W1D1_MAIZE Gag-pol OS=Zea mays PE=4 SV=1 94 8e-30
tr|A5B2I6|A5B2I6_VITVI Putative uncharacterized protein OS=Vitis... 89 1e-29
tr|Q6B961|Q6B961_CANGA Polyprotein OS=Candida glabrata PE=4 SV=1 99 1e-29
tr|B4UN02|B4UN02_CANGA Encodes gag OS=Candida glabrata GN=CAGL0G... 99 1e-29
tr|Q0ZLH4|Q0ZLH4_9ORYZ Polyprotein OS=Oryza australiensis PE=4 SV=1 97 1e-29
tr|Q2R3T2|Q2R3T2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 98 1e-29
tr|Q7XBQ5|Q7XBQ5_ORYSJ Putative retroelement (Retrotransposon pr... 93 1e-29
tr|Q01M25|Q01M25_ORYSA OSIGBa0144J05.2 protein OS=Oryza sativa G... 94 2e-29
tr|Q01M09|Q01M09_ORYSA OSIGBa0096F13.1 protein OS=Oryza sativa G... 94 2e-29
tr|Q01LZ5|Q01LZ5_ORYSA OSIGBa0157N01.6 protein (OSIGBa0092O07.1 ... 93 2e-29
tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subs... 98 2e-29
tr|Q2HW87|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse tran... 91 2e-29
tr|Q2QR37|Q2QR37_ORYSJ Retrotransposon protein, putative, Ty3-gy... 91 2e-29
tr|Q6AT86|Q6AT86_ORYSJ Putative polyprotein OS=Oryza sativa subs... 93 2e-29
tr|Q6ATE0|Q6ATE0_ORYSJ Putative polyprotein OS=Oryza sativa subs... 93 2e-29
tr|Q7X7A3|Q7X7A3_ORYSA OSJNBa0014F04.1 protein (OSJNBa0061C06.22... 91 2e-29
tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse tran... 91 2e-29
tr|Q53Q35|Q53Q35_ORYSJ Retrotransposon protein, putative, Ty3-gy... 92 3e-29
tr|Q53JJ6|Q53JJ6_ORYSJ Retrotransposon protein, putative, Ty3-gy... 91 3e-29
tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa s... 98 3e-29
tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 95 3e-29
tr|Q2R082|Q2R082_ORYSJ Retrotransposon protein, putative, Ty3-gy... 93 3e-29
tr|Q7XXI2|Q7XXI2_ORYSJ OSJNBa0059H15.7 protein OS=Oryza sativa s... 96 3e-29
tr|Q25AE1|Q25AE1_ORYSA H0201G08.12 protein OS=Oryza sativa GN=H0... 91 3e-29
tr|Q6I552|Q6I552_ORYSJ Putative polyprotein OS=Oryza sativa subs... 91 4e-29
tr|Q2QUX2|Q2QUX2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 91 4e-29
tr|Q7XX57|Q7XX57_ORYSJ OSJNBb0049I21.6 protein OS=Oryza sativa s... 98 4e-29
>tr|Q4QXS8|Q4QXS8_HORVD Polyprotein OS=Hordeum vulgare var.
distichum PE=4 SV=1
Length = 1486
Score = 92.8 bits (229), Expect(2) = 1e-31
Identities = 41/72 (56%), Positives = 56/72 (77%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ +LFV+KKDG+ RLCVDY LNKKT+KNK+ P I + ++L GAKVFS++DL+
Sbjct: 592 SPWGCGVLFVKKKDGTERLCVDYRPLNKKTIKNKYPLPNINELFEQLKGAKVFSKLDLRM 651
Query: 373 GYHQVRVFKGDI 338
GYHQ+R+ + DI
Sbjct: 652 GYHQIRIREEDI 663
Score = 67.0 bits (162), Expect(2) = 1e-31
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGL-TAEGTF-KLSHHRSFW*HDRHVCIFLHDILIFSTSWE*HE 156
TAF S GS +M FGL A TF +L ++ + V ++L DIL+FS E HE
Sbjct: 666 TAFRTSFGSYEYTVMSFGLPNAPPTFCRLMNYIFSPFKNEFVFLYLDDILVFSEDEEEHE 725
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
+ + VL +L EY+LY K EF+L EV+Y +I+S + IK+ P K
Sbjct: 726 KHLRLVLDKLREYKLYAKFSKCEFWLKEVVYLGHIISAEGIKVDPSK 772
>tr|Q5JPW2|Q5JPW2_ORYSA OSJNBa0085C10.29 protein OS=Oryza sativa
GN=OSJNBa0085C10.29 PE=4 SV=1
Length = 626
Score = 94.0 bits (232), Expect(2) = 3e-30
Identities = 42/72 (58%), Positives = 58/72 (80%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ A +LFV+KKDGS R+CVDY +LNK T+KNK+ PRI+ + D+L GAKVFS++DL+S
Sbjct: 353 SPWGAQVLFVKKKDGSMRMCVDYRSLNKVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 412
Query: 373 GYHQVRVFKGDI 338
YHQ+++ DI
Sbjct: 413 EYHQLKIRPRDI 424
Score = 61.6 bits (148), Expect(2) = 3e-30
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = -2
Query: 353 IQGRHLYPTAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*H-DRHVCIFLHDILIF 180
I+ R + TAF+ G +M FGLT A F ++ F + D+ V +F+ DILI+
Sbjct: 419 IRPRDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMEYLDKFVVVFIDDILIY 478
Query: 179 STSWE*HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
S E H + +VL +L E+QLY K EF+L EV + +++S + + P K
Sbjct: 479 SKDEEEHAEHLSQVLEKLREHQLYAKFSKCEFWLKEVAFLCHVISAGGVAVDPAK 533
>tr|Q33AB6|Q33AB6_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g12710 PE=4 SV=1
Length = 1796
Score = 90.5 bits (223), Expect(2) = 6e-30
Identities = 40/72 (55%), Positives = 57/72 (79%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ A ++FV KKD + R+CVDY ALN+ T+KNK+ PRI+ + D+L GA VFS++DL+S
Sbjct: 893 SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRS 952
Query: 373 GYHQVRVFKGDI 338
GYHQ+R+ + DI
Sbjct: 953 GYHQLRIREEDI 964
Score = 63.9 bits (154), Expect(2) = 6e-30
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLTAEGTFKLSHHRSFW*H--DRHVCIFLHDILIFSTSWE*HE 156
TAF G +M FGLT F ++ + D+ V +F+ DILI+S S E H+
Sbjct: 967 TAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQ 1026
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPD 18
+ VL +L E+QLY K EF+L EV + +++S + +YP+
Sbjct: 1027 HHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVYPE 1072
>tr|Q8W1D1|Q8W1D1_MAIZE Gag-pol OS=Zea mays PE=4 SV=1
Length = 1470
Score = 94.4 bits (233), Expect(2) = 8e-30
Identities = 41/72 (56%), Positives = 58/72 (80%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ A +LFV KKDGS R+CVDY +LN+ T+KNK+ PRIE + D++ GAKVFS++DL+S
Sbjct: 575 SPWGAPVLFVNKKDGSRRMCVDYRSLNEVTIKNKYPLPRIEDLFDQMKGAKVFSKIDLRS 634
Query: 373 GYHQVRVFKGDI 338
GYHQ+++ D+
Sbjct: 635 GYHQLKIRAEDV 646
Score = 59.7 bits (143), Expect(2) = 8e-30
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Frame = -2
Query: 353 IQGRHLYPTAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*H-DRHVCIFLHDILIF 180
I+ + TAF G L+M FGLT A F ++ F + D+ V +F+ DILI+
Sbjct: 641 IRAEDVPKTAFTTRYGLYEFLVMSFGLTNAPAYFMNLMNKVFMEYLDQFVVVFIDDILIY 700
Query: 179 STSWE*HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
S++ E HE + VL +L + QLY K +F+L EV + +IV+ IK+ P K
Sbjct: 701 SSNEEAHEDHLRLVLQKLRDNQLYAKFSKCDFWLKEVAFLGHIVTDGGIKVDPGK 755
>tr|A5B2I6|A5B2I6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_043911 PE=4 SV=1
Length = 2232
Score = 89.4 bits (220), Expect(2) = 1e-29
Identities = 41/72 (56%), Positives = 57/72 (79%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SPF++ +L V+KKDG R C+DY ALNK TV ++F P I+ +LD+L+GA +FS++DLKS
Sbjct: 1273 SPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDELLDKLHGATIFSKLDLKS 1332
Query: 373 GYHQVRVFKGDI 338
GYHQ+RV + DI
Sbjct: 1333 GYHQIRVRQQDI 1344
Score = 64.3 bits (155), Expect(2) = 1e-29
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*H-DRHVCIFLHDILIFSTSWE*HE 156
TAF EG L+MPFGLT A TF+ +R FW H + V +F +DIL++S + H
Sbjct: 1347 TAFRTHEGHYEFLVMPFGLTNAPATFQSLMNRIFWPHLWKFVLVFFYDILVYSKDLKEHC 1406
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
++ VL+ L +QL++ KK F +++ Y ++VS + P+K
Sbjct: 1407 DHLQTVLSILANHQLHVNGKKCLFAKLQLEYLGHLVSAKGVAADPNK 1453
>tr|Q6B961|Q6B961_CANGA Polyprotein OS=Candida glabrata PE=4 SV=1
Length = 1504
Score = 98.6 bits (244), Expect(2) = 1e-29
Identities = 49/73 (67%), Positives = 58/73 (79%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SPFAA +LFV+KKDGSSRLCVDY LN TVK+KF P IE +LD L+GAK+FS++DL S
Sbjct: 551 SPFAAPVLFVKKKDGSSRLCVDYRGLNNATVKSKFPLPLIEDVLDSLHGAKIFSKLDLIS 610
Query: 373 GYHQVRVFKGDIY 335
GYHQV V + D Y
Sbjct: 611 GYHQVSVNEPDRY 623
Score = 55.1 bits (131), Expect(2) = 1e-29
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = -2
Query: 335 YPTAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HDRHVC-IFLHDILIFSTSWE* 162
Y T+F EG +MPFGLT A TF+ + + C ++L DILI+S + E
Sbjct: 623 YKTSFITHEGQYQWNVMPFGLTNAPATFQRLMNAVLRPYISKFCVVYLDDILIYSKTREE 682
Query: 161 HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
H + +VL +L ++ LY K F L +V + ++++ + I P+K
Sbjct: 683 HLHHISQVLDKLRKHSLYPKKSKCHFMLTQVQFLGHVINANGISTDPEK 731
>tr|B4UN02|B4UN02_CANGA Encodes gag OS=Candida glabrata
GN=CAGL0G07183g2 PE=4 SV=1
Length = 1504
Score = 98.6 bits (244), Expect(2) = 1e-29
Identities = 49/73 (67%), Positives = 58/73 (79%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SPFAA +LFV+KKDGSSRLCVDY LN TVK+KF P IE +LD L+GAK+FS++DL S
Sbjct: 551 SPFAAPVLFVKKKDGSSRLCVDYRGLNNATVKSKFPLPLIEDVLDSLHGAKIFSKLDLIS 610
Query: 373 GYHQVRVFKGDIY 335
GYHQV V + D Y
Sbjct: 611 GYHQVSVNEPDRY 623
Score = 55.1 bits (131), Expect(2) = 1e-29
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = -2
Query: 335 YPTAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*HDRHVC-IFLHDILIFSTSWE* 162
Y T+F EG +MPFGLT A TF+ + + C ++L DILI+S + E
Sbjct: 623 YKTSFITHEGQYQWNVMPFGLTNAPATFQRLMNAVLRPYISKFCVVYLDDILIYSKTREE 682
Query: 161 HERDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
H + +VL +L ++ LY K F L +V + ++++ + I P+K
Sbjct: 683 HLHHISQVLDKLRKHSLYPKKSKCHFMLTQVQFLGHVINANGISTDPEK 731
>tr|Q0ZLH4|Q0ZLH4_9ORYZ Polyprotein OS=Oryza australiensis PE=4 SV=1
Length = 1469
Score = 96.7 bits (239), Expect(2) = 1e-29
Identities = 42/72 (58%), Positives = 60/72 (83%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ A +LFV+KKDGS R+CVDY +LN+ T+KNK+ PRI+ + D+L GA+VFS++DL+S
Sbjct: 575 SPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAQVFSKIDLRS 634
Query: 373 GYHQVRVFKGDI 338
GYHQ+++ GDI
Sbjct: 635 GYHQLKIRAGDI 646
Score = 56.6 bits (135), Expect(2) = 1e-29
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*H-DRHVCIFLHDILIFSTSWE*HE 156
TAF+ G +M FGLT A F ++ F + D+ V +F+ DILI+S + E H
Sbjct: 649 TAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMEYLDKFVVVFIDDILIYSKNDEEHA 708
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
+ VL +L E++LY K EF+L EV + ++VS + + P K
Sbjct: 709 EHLRLVLEKLREHRLYAKFSKCEFWLKEVAFLGHVVSAGGVAVDPAK 755
>tr|Q2R3T2|Q2R3T2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g30860 PE=4 SV=1
Length = 879
Score = 98.2 bits (243), Expect(2) = 1e-29
Identities = 43/72 (59%), Positives = 60/72 (83%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ A +LFV+KKDGS R+CVDY +LN+ T+KNK+ PRI+ + D+L GAKVFS++DL+S
Sbjct: 449 SPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 508
Query: 373 GYHQVRVFKGDI 338
GYHQ+++ GDI
Sbjct: 509 GYHQLKIRTGDI 520
Score = 55.1 bits (131), Expect(2) = 1e-29
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLT-AEGTFKLSHHRSFW*H-DRHVCIFLHDILIFSTSWE*HE 156
TAF+ G +M FGLT A F ++ F + D V +F+ DILI+S E H
Sbjct: 523 TAFSTRYGLYEFTVMSFGLTNALAYFMYLMNKVFMEYLDEFVVVFIDDILIYSKDEEEHA 582
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPDK 15
+ + VL +L +++LY K EF+L EV + ++VS + + P K
Sbjct: 583 KHLRLVLEKLRKHKLYAKFSKCEFWLKEVAFLGHVVSAGGVAVDPAK 629
>tr|Q7XBQ5|Q7XBQ5_ORYSJ Putative retroelement (Retrotransposon
protein, putative, Ty3-gypsy subclass) OS=Oryza sativa
subsp. japonica GN=OSJNBa0011A24.17 PE=4 SV=1
Length = 591
Score = 93.2 bits (230), Expect(2) = 1e-29
Identities = 41/72 (56%), Positives = 58/72 (80%)
Frame = -3
Query: 553 SPFAALILFVRKKDGSSRLCVDYTALNKKTVKNKFRKPRIEYILDRLNGAKVFSEVDLKS 374
SP+ AL++FV KKD + R+CVDY ALN+ T+KNK+ PRI+ + D+L GA VFS++DL+S
Sbjct: 27 SPWGALVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRS 86
Query: 373 GYHQVRVFKGDI 338
GYHQ+R+ + DI
Sbjct: 87 GYHQLRIREEDI 98
Score = 60.1 bits (144), Expect(2) = 1e-29
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = -2
Query: 329 TAFAPSEGSGNMLLMPFGLTAEGTFKLSHHRSFW*H--DRHVCIFLHDILIFSTSWE*HE 156
TAF G +M FGLT F ++ + D+ V +F+ DILI+S S E H+
Sbjct: 101 TAFTTRYGVYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQ 160
Query: 155 RDVEKVLARLDEYQLYIAAKKSEFFLIEVIYQVYIVSVDSIKLYPD 18
+ VL +L E+QLY K EF+L EV + +++S + + P+
Sbjct: 161 HHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPE 206
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