BP918658
Clone id YMU001_000116_A09
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AATTGTGATGTGGAATGGACGACGAAGAGATTAGTCTGTTGATGGTGTTGCAATGCACGC
TGTCGAAGGACGCATTGCGGCATATCTTCTAATCACAGTAACATCCTTTATATCCTTGAA
GGATATGGTGAGGAGAGATGGGCATTGTTGCACTGGACGATAGCAAAAGCTTCTTCAGAT
GGATGTGTATGATAGCCTAGTCTCAGCTCGACCAACGGGTTTGCAAGGAGGTAGTAGAGG
GATGCCCGGAGTGTGCATGTGAGCAATGTTGGAAGGGCTGCAGAGGTGCTCCGAAGGATC
GGTGGCAATTCATTCAGTCGGTGAGGCAGACTGTCCATAAGGTTTGCTTGTATACAGAAG
ACAACTGGCATTCTTGCACCGAATATTCTTTGATTTATGTAAGGGGTTCATGCAAGGTTG
TCTAGCAATGTCCTATGCAATGCTCACTTGTAATTAGAAATAATGAGACAGGTGTATCCA
ATTAGTGAAATTATTGTAGATTGTTTATTG
■■Homology search results ■■ -
sp_hit_id Q929W8
Definition sp|Q929W8|Y2155_LISIN UPF0348 protein lin2155 OS=Listeria innocua
Align length 49
Score (bit) 32.3
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918658|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_A09.
(510 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q929W8|Y2155_LISIN UPF0348 protein lin2155 OS=Listeria innocu... 32 1.3
sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian he... 31 3.9
sp|Q913Y8|ORF3_AHEV Protein ORF3 OS=Avian hepatitis E virus (iso... 31 3.9
sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin typ... 30 6.6

>sp|Q929W8|Y2155_LISIN UPF0348 protein lin2155 OS=Listeria innocua
GN=lin2155 PE=3 SV=1
Length = 391

Score = 32.3 bits (72), Expect = 1.3
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2

Query: 323 HRLNELPPILRSTSAALPTLLTCTLRASLYYLLANPLVELRLG-YHTHP 180
H+ N PI+ + S A P+LL LRA+ Y L N L + + G +HT P
Sbjct: 339 HKKNISLPIVTTVSKAEPSLLKEDLRATDIYTLINGLEDYQAGDFHTPP 387


>sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian
hepatitis E virus (isolate Chicken/California/Meng)
GN=ORF1 PE=3 SV=1
Length = 1531

Score = 30.8 bits (68), Expect = 3.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3

Query: 373 ECQLSSVYKQTLWTVCLTD*MNCHRSFGAPLQPFQHCSHAHSGHPSTTSLQTRWS 209
EC+L + W V L + + AP + + C HSG P T T W+
Sbjct: 1317 ECELMRRFGMPDWMVALYHLVRSYWLLVAPKEALRGCWKKHSGEPGTLLWNTVWN 1371


>sp|Q913Y8|ORF3_AHEV Protein ORF3 OS=Avian hepatitis E virus
(isolate Chicken/California/Meng) GN=ORF3 PE=3 SV=1
Length = 87

Score = 30.8 bits (68), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3

Query: 222 CKEVVEGC---PECACEQCWKGCRGAPK 296
C+E GC C+C QC GC+GAPK
Sbjct: 12 CQESGVGCRCVDCCSCLQCAAGCQGAPK 39


>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5
OS=Mus musculus GN=Pcsk5 PE=1 SV=2
Length = 1877

Score = 30.0 bits (66), Expect = 6.6
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Frame = +3

Query: 219 VCKEVVEGCPECACEQCWKGC------------RGAPKDRWQFIQSVRQTV--HKVCLY- 353
VCK E C +C E+ K C R PK F +RQ V HK CL
Sbjct: 1349 VCKHCPERCQDCIHEKTCKECMPDFFLYNDMCHRSCPK---SFYPDMRQCVPCHKNCLEC 1405

Query: 354 ---TEDNWHSCTEYSLIYVRGSCKVV*QCP 434
ED+ C + S G C + +CP
Sbjct: 1406 NGPKEDDCKVCADTSKALHNGLC--LDECP 1433


tr_hit_id Q4P0S3
Definition tr|Q4P0S3|Q4P0S3_USTMA Predicted protein OS=Ustilago maydis
Align length 114
Score (bit) 37.7
E-value 0.33
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918658|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_A09.
(510 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4P0S3|Q4P0S3_USTMA Predicted protein OS=Ustilago maydis GN=U... 38 0.33
tr|Q0FG23|Q0FG23_9RHOB Probable oxidoreductase protein OS=Rhodob... 37 0.74
tr|A6L7Y7|A6L7Y7_PARD8 Putative hydrogenase OS=Parabacteroides d... 34 3.6
tr|A2Q5E3|A2Q5E3_MEDTR F-box domain, putative, related OS=Medica... 28 4.1
tr|Q7VK32|Q7VK32_HELHP Putative uncharacterized protein OS=Helic... 33 6.1
tr|A9WF15|A9WF15_CHLAA Capsular exopolysaccharide family OS=Chlo... 33 8.0
tr|B2QGD9|B2QGD9_9CHLR Capsular exopolysaccharide family OS=Chlo... 33 8.0
tr|A4RWC6|A4RWC6_OSTLU Predicted protein OS=Ostreococcus lucimar... 33 8.0
tr|Q474N1|Q474N1_RALEJ TPR repeat OS=Ralstonia eutropha (strain ... 33 8.1

>tr|Q4P0S3|Q4P0S3_USTMA Predicted protein OS=Ustilago maydis
GN=UM06290.1 PE=4 SV=1
Length = 223

Score = 37.7 bits (86), Expect = 0.33
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Frame = -1

Query: 360 LLYTS-----KPYGQSASPTE*IATDPSEHLCSPSNIAHMHTPGIPLLPPCKP------- 217
+LY+S KP G S P ++ PSE N + +TPGI L PP KP
Sbjct: 114 VLYSSSQFYIKPKGSSPDPASGQSSIPSE------NQPYFNTPGIVLPPPAKPDQVTNTT 167

Query: 216 -----VGRAETRLSYTSI*RSF-CYRPVQQCPSLLTISFKDIKDVTVIRRYAAM 73
A RL +S SF ++PVQ S L + F D+ V VI + A+
Sbjct: 168 AGPNSNNEALPRLDGSS--ASFGSFQPVQHTNSALGMLFSDLLFVLVIAAFTAL 219


>tr|Q0FG23|Q0FG23_9RHOB Probable oxidoreductase protein
OS=Rhodobacterales bacterium HTCC2255 GN=OM2255_04790
PE=4 SV=1
Length = 357

Score = 36.6 bits (83), Expect = 0.74
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -1

Query: 405 PLHKSKNIRCKNASCLLYTSKPYGQSASPTE*IATDPSEHLCSPSNIAHMHTPGIPLLPP 226
PLH S+ + C SC + KP SA + I TD +EH P + H H PL+
Sbjct: 73 PLHVSQGLECIEKSCPVLVEKPLATSAIQAK-ILTDAAEHASVPLLVGH-HRRHNPLIQK 130

Query: 225 CK 220
K
Sbjct: 131 AK 132


>tr|A6L7Y7|A6L7Y7_PARD8 Putative hydrogenase OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=BDI_0006 PE=4 SV=1
Length = 478

Score = 34.3 bits (77), Expect = 3.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3

Query: 228 EVVEGCPECACEQCWKGCRGAPKDRWQFIQSVRQTV-HKVCLYTEDNWHSCTEYSLIYVR 404
E+ C C C+ C PKD +F ++ + + H+ C+ SC ++++Y+
Sbjct: 115 EITNLCRGCVARSCYMNC---PKDAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIP 171

Query: 405 GSCKVV*QCPMQ 440
C+ V CP++
Sbjct: 172 IPCEEV--CPVK 181


>tr|A2Q5E3|A2Q5E3_MEDTR F-box domain, putative, related OS=Medicago
truncatula GN=MtrDRAFT_AC161399g45v2 PE=4 SV=1
Length = 114

Score = 28.5 bits (62), Expect(2) = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1

Query: 402 LHKSKNIRCKNASCLLYTSKPYGQSASPT 316
LH ++IR + + YT KPY +S PT
Sbjct: 22 LHLQRSIRKPQLALVYYTDKPYTESVLPT 50



Score = 25.0 bits (53), Expect(2) = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2

Query: 287 TSAALPTLLTCTLRASLYYLLANPLVELR 201
T + LPT L+C L +S L +P +L+
Sbjct: 44 TESVLPTSLSCLLESSSITLTEDPYYQLK 72


>tr|Q7VK32|Q7VK32_HELHP Putative uncharacterized protein
OS=Helicobacter hepaticus GN=HH_0060 PE=4 SV=1
Length = 597

Score = 33.5 bits (75), Expect = 6.1
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Frame = -2

Query: 344 NLMDSLPHRLNELPPILRSTSAALPTLLTCTLRASLYYLLANPLVELRLGYHTHPSEEAF 165
+L SLPH ELP ++++ T+LT YY A E+ +PS + F
Sbjct: 120 SLRQSLPHAFPELPLHIQNSFQDSHTILTQFHTPKTYYYTALETKEI-----LNPSSDMF 174

Query: 164 AIVQCNNAHLSSP-------YPSRI*RMLL*LEDMPQCVLRQRALQ 48
A++ N++ P Y I ML + +P C QR LQ
Sbjct: 175 ALLNPPNSYAHKPLISPDKTYFIHIVNMLKEKQSVPFCT--QRGLQ 218


>tr|A9WF15|A9WF15_CHLAA Capsular exopolysaccharide family
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_2118 PE=3 SV=1
Length = 469

Score = 33.1 bits (74), Expect = 8.0
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = -2

Query: 362 VFCIQANLMDSLPHRLNELP------PILRSTSAALPTLLTCTLRASLYYLLANPLVEL 204
V + ANL + + H L ELP +L ST+ A+ L T +A+LY L A ++ L
Sbjct: 293 VILVDANLRNPIQHTLFELPNQGGLSNLLSSTAQAIEPFLRVTAQANLYVLTAGNVLGL 351


>tr|B2QGD9|B2QGD9_9CHLR Capsular exopolysaccharide family
OS=Chloroflexus sp. Y-400-fl GN=Chy400DRAFT_0257 PE=3
SV=1
Length = 469

Score = 33.1 bits (74), Expect = 8.0
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = -2

Query: 362 VFCIQANLMDSLPHRLNELP------PILRSTSAALPTLLTCTLRASLYYLLANPLVEL 204
V + ANL + + H L ELP +L ST+ A+ L T +A+LY L A ++ L
Sbjct: 293 VILVDANLRNPIQHTLFELPNQGGLSNLLSSTAQAIEPFLRVTAQANLYVLTAGNVLGL 351


>tr|A4RWC6|A4RWC6_OSTLU Predicted protein OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_31292 PE=4 SV=1
Length = 4003

Score = 33.1 bits (74), Expect = 8.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3

Query: 237 EGCPECACEQCWKGCRGAPKDRWQFIQSVRQTVHKVCLYTEDNWHS 374
+ CP+ AC W GC+ P D QF ++ + E W+S
Sbjct: 2435 KACPDEACPDYWDGCQVEPDDMRQFFRNRNSLERLALMRDEFAWNS 2480


>tr|Q474N1|Q474N1_RALEJ TPR repeat OS=Ralstonia eutropha (strain
JMP134) GN=Reut_A0772 PE=4 SV=1
Length = 611

Score = 33.1 bits (74), Expect = 8.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1

Query: 309 IATDPSEHLCSPSN-IAHMHTPGIPLLPPCKPVGRAETRLSYTSI*RSFCYRPV 151
++ DP E L + N +A+ +P L P KP G + R+ Y S C PV
Sbjct: 217 LSDDPQEQLTAAQNYVANKINCNVPTLAPAKPYGHKKIRVGYLS--SDLCLHPV 268