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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918666
Clone id YMU001_000116_B06
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAGAAAAAGGAGGAGGTGAAGCCAGCTGAGGAAGCAAAAAAAGAGGAAGAGAAGCCTGC
CGACGCTGCACCTGCCGCAGCGGAGGCTGCACCTCCGGCTGCGGAGGGGGAGAAAAAGGC
CGAAGAGAAGAAAGAGGAGGAGAAGAAAGATGCTCCTCCAGCAGAGAAGCCGGAAGAGAA
GAAAGAAGTGTCTCCTGAGGAAACCGAAGACAGAGGTGAAGAAGTATGAGTACAATCCAT
ATAGAAGTCATGTGCCAGAGTACTATGTCTATCCTCCTCAGCTCTTTAGCGACGAGAATC
CAAATGCTTGTTCGATCATGTAGAGCTTCCAACATCTTCTCAGAAATACCAACAAGCATA
CTCAGGGTATTTTGATTATGCCCATGGACAGAGTTCATTCCTTGCAAGAGTCGAGGAGCT
TCTATGGCTTCTTCAAGCACATGTCTGCAAAGGAGGAGATAGCCGAGGCTACAAGTAGTA
TGATTTAGAGCGCTCTCTACACATGCATCAGTAGAATGCAGACCTTGTTACTCCC
■■Homology search results ■■ -
sp_hit_id Q54UB5
Definition sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum
Align length 88
Score (bit) 31.6
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918666|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B06.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subun...    32   2.3  
sp|P24146|LEC4_GRISI Lectin-4 OS=Griffonia simplicifolia PE=1 SV=3     30   6.8  
sp|Q75E72|MED16_ASHGO Mediator of RNA polymerase II transcriptio...    30   8.8  

>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit
           11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1
          Length = 413

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = -3

Query: 455 SLGYLLLCRHVLEEAIEAPRLLQGMNSVHGHNQNTLSMLVGISEKMLE-ALHDRTSIWIL 279
           +L Y+LLC+ +  +  +   L+ G   +  HN  ++  +  IS+   + +LH    +   
Sbjct: 240 ALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKE 299

Query: 278 VAKELRRIDIVLWHMTSIWIVLILLHLC 195
            + +L    I+  H+T ++  L+  +LC
Sbjct: 300 FSDQLSDDPIIHSHLTELYSNLLEQNLC 327


>sp|P24146|LEC4_GRISI Lectin-4 OS=Griffonia simplicifolia PE=1 SV=3
          Length = 243

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 219 NPYRSHVPEYYVYPPQLFSDENPNACSIM*SFQHLLRNTNKHTQ---GILIMPMDRVHSL 389
           NP RS   +     P    D    A S   SF  LL+N    T       + P+D   S+
Sbjct: 45  NPVRSSAGQASYSEPVFLWDSTGKAASFYTSFTFLLKNYGAPTADGLAFFLAPVD--SSV 102

Query: 390 QESRSFYGFFKHMSAKE 440
           ++   F G F+H +A +
Sbjct: 103 KDYGGFLGLFRHETAAD 119


>sp|Q75E72|MED16_ASHGO Mediator of RNA polymerase II transcription
           subunit 16 OS=Ashbya gossypii GN=SIN4 PE=3 SV=1
          Length = 938

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 225 YRSHVPEYYVYPPQLFSDENPNACSIM*SFQHLLRNTNKHTQGIL 359
           +R H P+ YV  PQL  D++ N       F H LR+ + +  G+L
Sbjct: 46  WRFHPPKKYVIHPQLHEDQSSNGNPKSPLFFHDLRSMHWNNWGLL 90
tr_hit_id A7R4S7
Definition tr|A7R4S7|A7R4S7_VITVI Chromosome undetermined scaffold_769, whole genome shotgun sequence OS=Vitis vinifera
Align length 37
Score (bit) 49.3
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918666|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B06.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R4S7|A7R4S7_VITVI Chromosome undetermined scaffold_769, who...    49   1e-04
tr|Q9LUE8|Q9LUE8_ARATH Similarity to ATFP3 (At5g50730) OS=Arabid...    46   0.001
tr|Q570V5|Q570V5_ARATH Putative uncharacterized protein At5g5074...    46   0.001
tr|B3H4U8|B3H4U8_ARATH Uncharacterized protein At5g50740.3 OS=Ar...    46   0.001
tr|Q9FMU9|Q9FMU9_ARATH Similarity to ATFP3 OS=Arabidopsis thalia...    45   0.003
tr|Q9C5D3|Q9C5D3_ARATH Putative uncharacterized protein At5g6353...    45   0.003
tr|A7PHJ6|A7PHJ6_VITVI Chromosome chr17 scaffold_16, whole genom...    45   0.003
tr|B2BGS5|B2BGS5_OLEEU Putative farnesylated protein (Fragment) ...    44   0.006
tr|Q9SMK2|Q9SMK2_CICAR Farnesylated protein (Fragment) OS=Cicer ...    42   0.018
tr|Q9ZRE7|Q9ZRE7_ARATH ATFP3 (Fragment) OS=Arabidopsis thaliana ...    42   0.024
tr|Q6K793|Q6K793_ORYSJ Os02g0510600 protein OS=Oryza sativa subs...    41   0.041
tr|Q6K792|Q6K792_ORYSJ Putative uncharacterized protein OSJNBa00...    41   0.041
tr|Q6K791|Q6K791_ORYSJ Putative farnesylated protein OS=Oryza sa...    41   0.041
tr|B8AIQ4|B8AIQ4_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.041
tr|B6SPA8|B6SPA8_MAIZE Metal ion binding protein OS=Zea mays PE=...    41   0.041
tr|A3A798|A3A798_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.041
tr|Q7XKQ7|Q7XKQ7_ORYSJ Os04g0390100 protein OS=Oryza sativa subs...    40   0.053
tr|Q7XE25|Q7XE25_ORYSJ Heavy metal-associated domain containing ...    40   0.053
tr|Q01LD6|Q01LD6_ORYSA OSIGBa0132D06.1 protein (OSIGBa0096P03.8 ...    40   0.053
tr|A3C553|A3C553_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.053
tr|A3AT99|A3AT99_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.053
tr|A2Z7T7|A2Z7T7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.053
tr|A2XST7|A2XST7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.053
tr|Q9SHQ8|Q9SHQ8_ARATH F1K23.4 OS=Arabidopsis thaliana GN=At1g29...    40   0.070
tr|B6U211|B6U211_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.12 
tr|B6TV44|B6TV44_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.12 
tr|A2XCL8|A2XCL8_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.12 
tr|Q9ZRD8|Q9ZRD8_SOYBN GMFP5 (Fragment) OS=Glycine max PE=2 SV=1       39   0.15 
tr|Q10RN8|Q10RN8_ORYSJ Os03g0152000 protein OS=Oryza sativa subs...    39   0.15 
tr|B6U064|B6U064_MAIZE Metal ion binding protein OS=Zea mays PE=...    39   0.15 

>tr|A7R4S7|A7R4S7_VITVI Chromosome undetermined scaffold_769, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004655001 PE=4 SV=1
          Length = 117

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +3

Query: 195 TEVKKYEYNPYRSHVPEYYVYPPQLFSDENPNACSIM 305
           T+VK+ EY P + ++ E+  YPPQ FSDENPNACS+M
Sbjct: 82  TDVKRSEYWPTKDYL-EFASYPPQYFSDENPNACSVM 117


>tr|Q9LUE8|Q9LUE8_ARATH Similarity to ATFP3 (At5g50730)
           OS=Arabidopsis thaliana GN=At5g50730 PE=2 SV=1
          Length = 139

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 207 KYEYNPYRSHVPEYYVYPPQLFSDENPNACSIM 305
           +Y+Y P R  V E + YPPQ+FSDENPNAC+I+
Sbjct: 108 EYQYQPPRYPV-EMFAYPPQIFSDENPNACTII 139


>tr|Q570V5|Q570V5_ARATH Putative uncharacterized protein At5g50740
           OS=Arabidopsis thaliana GN=At5g50740 PE=2 SV=1
          Length = 283

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 207 KYEYNPYRSHVPEYYVYPPQLFSDENPNACSIM 305
           +Y+Y P R  V E + YPPQ+FSDENPNAC+I+
Sbjct: 252 EYQYQPPRYPV-EMFAYPPQIFSDENPNACTII 283


>tr|B3H4U8|B3H4U8_ARATH Uncharacterized protein At5g50740.3
           OS=Arabidopsis thaliana GN=At5g50740 PE=4 SV=1
          Length = 290

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 207 KYEYNPYRSHVPEYYVYPPQLFSDENPNACSIM 305
           +Y+Y P R  V E + YPPQ+FSDENPNAC+I+
Sbjct: 259 EYQYQPPRYPV-EMFAYPPQIFSDENPNACTII 290


>tr|Q9FMU9|Q9FMU9_ARATH Similarity to ATFP3 OS=Arabidopsis thaliana
           PE=4 SV=1
          Length = 340

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = +3

Query: 210 YEYNPYRSHVPEY----YVYPPQLFSDENPNACSIM 305
           Y Y P R  +P      + YPPQLFSDENPNAC++M
Sbjct: 305 YYYQPPRVAIPPMEMPPHAYPPQLFSDENPNACTVM 340


>tr|Q9C5D3|Q9C5D3_ARATH Putative uncharacterized protein At5g63530
           OS=Arabidopsis thaliana GN=At5g63530 PE=2 SV=1
          Length = 355

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = +3

Query: 210 YEYNPYRSHVPEY----YVYPPQLFSDENPNACSIM 305
           Y Y P R  +P      + YPPQLFSDENPNAC++M
Sbjct: 320 YYYQPPRVAIPPMEMPPHAYPPQLFSDENPNACTVM 355


>tr|A7PHJ6|A7PHJ6_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017967001
           PE=4 SV=1
          Length = 299

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 8/44 (18%)
 Frame = +3

Query: 198 EVKK----YEYNPYRSHVPEYYV----YPPQLFSDENPNACSIM 305
           E+KK    Y YN Y  + P YY+    YP Q+FSDENPNACS+M
Sbjct: 257 ELKKNEFLYNYN-YPYYPPRYYMEQNPYPSQIFSDENPNACSVM 299


>tr|B2BGS5|B2BGS5_OLEEU Putative farnesylated protein (Fragment)
           OS=Olea europaea PE=2 SV=1
          Length = 43

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
 Frame = +3

Query: 195 TEVKKYEYNPYRSHVPEYYV---YPPQLFSDENPNACSIM 305
           TE+KK EY P     P+YY+    PPQ+ SDENP+ACS+M
Sbjct: 8   TEIKKSEYWP----PPKYYMDYANPPQMLSDENPHACSVM 43


>tr|Q9SMK2|Q9SMK2_CICAR Farnesylated protein (Fragment) OS=Cicer
           arietinum PE=2 SV=1
          Length = 101

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 8/44 (18%)
 Frame = +3

Query: 198 EVKKYEYN-PYRSHVPEY-------YVYPPQLFSDENPNACSIM 305
           E+KK EY   Y + V  Y         YPPQ+FSDENPNACS+M
Sbjct: 58  EMKKNEYYYKYGTEVFAYPDPAYPLQAYPPQIFSDENPNACSVM 101


>tr|Q9ZRE7|Q9ZRE7_ARATH ATFP3 (Fragment) OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 297

 Score = 41.6 bits (96), Expect = 0.024
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 13/49 (26%)
 Frame = +3

Query: 198 EVKKYEYNPYRSHVPEY-------------YVYPPQLFSDENPNACSIM 305
           EV+K E NPY  +  ++             + YPPQLFSDENPNAC++M
Sbjct: 250 EVRKIE-NPYYYYYYQHRRVANSAYGNVPPHAYPPQLFSDENPNACTVM 297