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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918668
Clone id YMU001_000116_B08
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGCAACGCAACCTTATTCAACTTGTAAGGTTCTATTCTCAAGATCGACAATCTGAAAG
CAGATCTTCTTCACATGTTCCTCCACTTGATCGTGGTAAAGAATGTGATTTTTCTCAAGA
TCGGCATTCCAATCCTAAGCAAGTCTCTTCGTCAAATGCATCTTCAATTTCAAAGAAGGA
AGGATTATGTACAATTTGCAGTGGTGACCATAGATGGTATCAATGTCCAAAGAGACCAAA
TCCGTCTAATTTGAAAAGAAATTCCAACGCGGAAACATCATCGAATGTTGAACAACCAGA
TTCTGCTAAGGATAAAGGAAAATCTGTGATCAATACGATTCGTGTCTCAGAGGATACGAC
TATTCTTATGAAGGATGCCCAGTGCAATTCTTCAGTTTTGGAGCCTCTCTCAA
■■Homology search results ■■ -
sp_hit_id B0VZS1
Definition sp|B0VZS1|EIF3G_CULQU Eukaryotic translation initiation factor 3 subunit G OS=Culex quinquefasciatus
Align length 82
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918668|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B08.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0VZS1|EIF3G_CULQU Eukaryotic translation initiation factor 3...    33   0.45 
sp|Q54X25|INT5_DICDI Integrator complex subunit 5-like protein O...    31   1.7  
sp|O85467|GERIA_BACCE Spore germination protein gerIA OS=Bacillu...    31   1.7  
sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680 OS=...    31   2.2  
sp|O67679|ENGB_AQUAE Probable GTP-binding protein engB OS=Aquife...    30   2.9  
sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium d...    30   4.9  
sp|O25770|MURG_HELPY UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    29   6.5  
sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus ...    29   6.5  
sp|Q59ZV5|EIF3G_CANAL Eukaryotic translation initiation factor 3...    29   8.4  

>sp|B0VZS1|EIF3G_CULQU Eukaryotic translation initiation factor 3
           subunit G OS=Culex quinquefasciatus GN=eIF3-S4 PE=3 SV=1
          Length = 272

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
 Frame = +2

Query: 188 CTICSGDHRWYQCP----------KRPNPSNLKRNSNAETSSNVEQPDSAKDKGKSVINT 337
           C IC G+H   QCP           +P P+    +S+A   S    P S +D  K+ +  
Sbjct: 122 CRICEGEHWSVQCPYKGTSYEAGKAKPVPAAQPESSSAPIKSGKYVPPSMRDSQKAALGA 181

Query: 338 IRVSEDTTILMKDAQCNSSVLE 403
                D T  ++ +  + ++ E
Sbjct: 182 NPRGRDDTTAIRISNLSEAMTE 203


>sp|Q54X25|INT5_DICDI Integrator complex subunit 5-like protein
           OS=Dictyostelium discoideum GN=DDB_G0279251 PE=3 SV=1
          Length = 1563

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +2

Query: 239 NPSNLKRNSNAETSSNVEQPDSAKDKGKSVINTIRVSEDTTILMKDAQCNSS 394
           N +N   N+N   ++  +Q  S + +  + IN +   E+ T  +   QCN++
Sbjct: 804 NNNNNNNNNNNNNNNQQQQQQSQEIENSTFINNLNQDENITFYLNQIQCNNN 855


>sp|O85467|GERIA_BACCE Spore germination protein gerIA OS=Bacillus
           cereus GN=gerIA PE=3 SV=1
          Length = 663

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
 Frame = +2

Query: 98  KECDFSQDRHSNPKQVXXXXXXXXXKKEGLCTICSGDHRWYQCPKRPNPSNLKR------ 259
           K+ D SQD+  NPKQ           K+G            Q  K+ +PS  K+      
Sbjct: 63  KQGDSSQDKQQNPKQEDSSQDKQQNPKQG-----DSSQDKQQSAKQKDPSQDKQQNPKQE 117

Query: 260 NSNAETSSNVEQPDSAKDKGKS 325
           +S+ +   + +Q DS++DK +S
Sbjct: 118 DSSQDKQQSAKQGDSSQDKQQS 139


>sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680
           OS=Arabidopsis thaliana GN=At3g52680 PE=2 SV=2
          Length = 456

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 108 IFLKIGIPILSKSLRQMHLQFQRRKD 185
           I + I  P+L KSLR +HL+F R KD
Sbjct: 159 ILVDIPSPVLMKSLRTLHLEFVRYKD 184


>sp|O67679|ENGB_AQUAE Probable GTP-binding protein engB OS=Aquifex
           aeolicus GN=engB PE=3 SV=1
          Length = 183

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 66  LLHMFLHLIVVKNVIFLKIGIPILSKSLRQMHLQFQRRKDYVQFAVVTIDGI 221
           LL   L+L+ V    + K+G   + K  + M   F+ RKD ++ A + ID +
Sbjct: 60  LLDKKLYLVDVPGYGYAKVGREEMEKWRKMMERYFKERKDNIKMAFLLIDAV 111


>sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium
            discoideum GN=DDB_G0289943 PE=3 SV=1
          Length = 1550

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +2

Query: 239  NP-SNLKRNSNAETSSNVEQPDSAKDKGKSVINTIRVSEDTTI----LMKDAQCNSSVLE 403
            NP SN+KRNSN        Q +  K+K K  I    V ++T+I    + KD   N++++E
Sbjct: 1402 NPFSNIKRNSNEVKVGQPVQQEIEKEKEKENIIGEDVEKETSIEQKEIKKDENDNNNIVE 1461


>sp|O25770|MURG_HELPY
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Helicobacter pylori GN=murG PE=3 SV=1
          Length = 353

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 173 KKEGLCTICSGDH----RWYQCPKRPNPSNLKRNSNAETSSNVEQPDSAKDKGKSVINTI 340
           +KE LC +   +     + ++  ++ N  + + N N  T SN  Q   AKD  K++I TI
Sbjct: 291 EKENLCYVVPQNELLPKKLFEVIRKLNQKDDQGNKNLTTISNQLQQKIAKDGAKTIIETI 350


>sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus
           GN=Lnx2 PE=1 SV=1
          Length = 687

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 227 PKRPNPSNLKRNSNAETSSNVEQPDSAKDKG 319
           P +P PSN  R + A +SSN  QP S    G
Sbjct: 420 PGKPQPSNGSREAGAHSSSNHAQPPSHSRPG 450


>sp|Q59ZV5|EIF3G_CANAL Eukaryotic translation initiation factor 3
           subunit G OS=Candida albicans GN=TIF35 PE=3 SV=1
          Length = 279

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +2

Query: 188 CTICSGDHRWYQCPKRPNPSNLKRNSNAETSSNVEQPDS-----AKDKGKSVINTIRVSE 352
           C +C GDH   +CP +     L   +    S    +P S     A   GK V   +R   
Sbjct: 127 CRVCGGDHYTAKCPFK---DTLGAAAGVTPSGTTPEPTSEGGAGAAGAGKYVPRHLRADA 183

Query: 353 DTTILMKDAQCNSSVLE 403
           +  +  ++A+ +S+ L+
Sbjct: 184 NGNVPTREARDDSTTLK 200
tr_hit_id A7TJM6
Definition tr|A7TJM6|A7TJM6_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294)
Align length 47
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918668|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B08.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7TJM6|A7TJM6_VANPO Putative uncharacterized protein OS=Vande...    38   0.29 
tr|B6NBC8|B6NBC8_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|A5CAZ0|A5CAZ0_VITVI Putative uncharacterized protein OS=Vitis...    33   7.1  

>tr|A7TJM6|A7TJM6_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_534p50 PE=4 SV=1
          Length = 490

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 239 NPSNLKRNSNAETSSNVEQPDSAKDKGKSVINTIRVSEDTTILMKDA 379
           N SN   NSN   S+   + DS K K K  IN   +S DT+ L KDA
Sbjct: 168 NLSNSNTNSNTPNSNKKSKTDSPKVKSKGKINKPSISRDTSKLAKDA 214


>tr|B6NBC8|B6NBC8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_93094 PE=4 SV=1
          Length = 453

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 301 FC*G*RKICDQYDSCLRGYDYSYEGCPVQFFSFGAS 408
           FC    K+CD  D C +G D SY  CPV   S  +S
Sbjct: 141 FCLRPEKVCDGNDDCQQGEDESYSTCPVSTTSSTSS 176



 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 301 FC*G*RKICDQYDSCLRGYDYSYEGCPVQFFSFGAS 408
           FC    K+CD  D C +G D SY  CPV   S  +S
Sbjct: 283 FCLRPEKVCDGNDDCQQGEDESYSTCPVSTTSSTSS 318


>tr|A5CAZ0|A5CAZ0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002537 PE=4 SV=1
          Length = 777

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 239 NPSNLKRNSNAETSSNVEQPDSAKDKGKSVINTIRVSED 355
           NPS  ++  NA T+ + E+P S  D+G+S IN I+  ++
Sbjct: 280 NPSGGEKAENARTALDEERPASTPDQGRSYINKIQKKKE 318