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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918669
Clone id YMU001_000116_B09
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGGGCCTCCAGAGATCCATCGCGTTCAAGTCTTATGGCCATTGCTGCATTTGCTTGGTG
CAAGCAGAGAAAGTTGACGCAAGAAGGCATTAAGAAATGGTGTCTGCGCAGAGATGGAGG
GTTGTTATGAAAGTGATGACACTCGGGCTGCTTTGCGAAGGCTGACGGTCCACTCTTTGG
TAATGCTGGAGGCTAAGACTCGGGATGATGATGTATGCGAGTGCGAAACACGAAAGTGGT
GTTATCGGATGATGGGCACCTTGTTTCTTGGTGCTCCACTTTCACCCTCCAAGAACTCAT
GGTGCTGTGAGCAGGTCTTCTTTTGATTTGCAATGAAGAGCATGGAGTTCAACATTGTAT
TATGTTACCTTCCTTTAGGAAGGTCTGTGACATAGTGTATTCTTTATGGAGCTGCCATTC
AAATGTGAATTGGCCATTCTCCTCATAAAGCTCTTGTGAACTTCAATTTCTTGGGGCTGA
TCGAAGGCATGTCGCCCAAAAATTGGGAAC
■■Homology search results ■■ -
sp_hit_id Q6P7B2
Definition sp|Q6P7B2|CB024_RAT Uncharacterized protein C2orf24 homolog OS=Rattus norvegicus
Align length 32
Score (bit) 33.1
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918669|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B09.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6P7B2|CB024_RAT Uncharacterized protein C2orf24 homolog OS=R...    33   0.77 
sp|Q8W4J2|MPK16_ARATH Mitogen-activated protein kinase 16 OS=Ara...    32   2.2  
sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus...    30   6.5  
sp|Q4V7X9|HAKAI_XENLA E3 ubiquitin-protein ligase Hakai OS=Xenop...    30   6.5  
sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai OS=Gallu...    30   6.5  
sp|Q01842|POK_DROME Ets DNA-binding protein pokkuri OS=Drosophil...    30   8.5  
sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens GN...    30   8.5  
sp|Q8CE64|ZN276_MOUSE Zinc finger protein 276 OS=Mus musculus GN...    30   8.6  
sp|Q8NCR6|CI024_HUMAN Uncharacterized protein C9orf24 OS=Homo sa...    30   8.6  

>sp|Q6P7B2|CB024_RAT Uncharacterized protein C2orf24 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 408

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 192 PPALPKSGPSAFAKQPECHHFHNNPPSLRRHH 97
           PP  P + P+ F K P C  F  NPP+ R  H
Sbjct: 320 PPPDPPAPPTPFHKCPFCQKFQRNPPNCRACH 351


>sp|Q8W4J2|MPK16_ARATH Mitogen-activated protein kinase 16
           OS=Arabidopsis thaliana GN=MPK16 PE=2 SV=2
          Length = 567

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
 Frame = -1

Query: 330 QIKRRPAHSTMSSWRVKVEHQETRCPSSDNTTFVFRTRIHHHPES*PPALPKSGPSAFAK 151
           +++R P+   ++  +++ E +  R    D    ++R  + +HP+     L  S P+ F  
Sbjct: 321 KVEREPSAQPVT--KLEFEFERRRITKEDVRELIYRESLEYHPKMLKEYLDGSEPTNFMY 378

Query: 150 QPECHHF---------------HNNPPSLRRHHFLMPSCV 76
                HF                +NPP  ++H  L  +CV
Sbjct: 379 PSAVEHFKKQFAYLEEHYKNGTSHNPPERQQHASLPRACV 418


>sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus
            terreus (strain NIH 2624) GN=ino80 PE=3 SV=1
          Length = 1690

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
 Frame = -1

Query: 432  QFTFEWQLHKEYTMSQ-TFLKEG-NIIQC*TPCSSLQIKRRPAHSTMSS----------- 292
            + T +  + +  T+SQ TF +EG N+I+   PC+S      P   T SS           
Sbjct: 1280 EITPDGYMRELMTVSQSTFEREGLNVIE---PCASPAASAPPVTITSSSPAAQIEMSDAL 1336

Query: 291  WRVKVEHQETRCPSSDNTTFVFRTRIHHHPES*PPALPKSGPSAFAKQPECHHFHNNPPS 112
            + V V H     P+      +   ++   P S PP LPK  P++     +  + H   PS
Sbjct: 1337 FNVPVRHALFSTPTRQLEEQILEKKLDPVPYSHPPMLPK--PTSL----KGRYTHIEVPS 1390

Query: 111  LRR 103
            +RR
Sbjct: 1391 MRR 1393


>sp|Q4V7X9|HAKAI_XENLA E3 ubiquitin-protein ligase Hakai OS=Xenopus
           laevis GN=cbll1 PE=2 SV=1
          Length = 496

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 207 HPES*PPALPKSGPSAFAKQPECHHFHNNPPSLRRHHFLMP 85
           HP   PP  P   P  F   P+ HH  + PP   + H LMP
Sbjct: 215 HPPLAPP--PAEIPDRFIMPPDKHHLSHMPP---KQHILMP 250


>sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai OS=Gallus
           gallus GN=CBLL1 PE=2 SV=1
          Length = 493

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 207 HPES*PPALPKSGPSAFAKQPECHHFHNNPPSLRRHHFLMP 85
           HP   PP  P   P  F   PE HH  + PP   + H +MP
Sbjct: 206 HPPIAPP--PAEIPERFIMPPEKHHMSHIPP---KQHIMMP 241


>sp|Q01842|POK_DROME Ets DNA-binding protein pokkuri OS=Drosophila
           melanogaster GN=aop PE=1 SV=2
          Length = 732

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -1

Query: 309 HSTMSSWRVKVEHQETRCPSSDNT-TFVFRTRIHHHPES*PPALPKSGPSAFAKQPECHH 133
           H+ +    ++    +   P+S  T T  +    H HP + P   P + P      PE   
Sbjct: 107 HNVLQMLIIESHMMQWHLPNSPVTPTSRYPLSPHSHPPT-PTWPPLNAP------PENSP 159

Query: 132 FHNNPPSLRRHHFLMPSCV 76
           FH++  SL  HHF+ P+ V
Sbjct: 160 FHSSAHSLAGHHFMAPNSV 178


>sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens
           GN=FOXB2 PE=2 SV=1
          Length = 432

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 213 HHHPES*PPALPKSGPSAFAKQPECHHFHNNPPS 112
           HHHP   PP  P   P         H+FH  PP+
Sbjct: 159 HHHPPQPPPPPPPPPPHM------VHYFHQQPPT 186


>sp|Q8CE64|ZN276_MOUSE Zinc finger protein 276 OS=Mus musculus
           GN=Znf276 PE=1 SV=3
          Length = 614

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 338 EHGVQHCIMLPSFRKV-----CDIVYSLWSCHSNVNWPFSS*SSCELQFL 472
           EH V  C  LPS ++      C I+ ++W C    ++   + SSC   FL
Sbjct: 206 EHAVS-CGSLPSLQRTLSSEYCGIIQAVWGCDQGHDFTMDTASSCRALFL 254


>sp|Q8NCR6|CI024_HUMAN Uncharacterized protein C9orf24 OS=Homo
           sapiens GN=C9orf24 PE=2 SV=2
          Length = 262

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 222 CETRKWCYRMMGTLFLGAPLSPSK-NSWCCEQVFF*FAMKSMEFNIVLCY 368
           C  R +C R M     GAP +  +   WC EQ     ++++   N V CY
Sbjct: 201 CSGRHYCLRGMDYYASGAPCTDRRLRPWCREQPTMCTSLRAPARNAVCCY 250
tr_hit_id A9SHB1
Definition tr|A9SHB1|A9SHB1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 38.1
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918669|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B09.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SHB1|A9SHB1_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.25 
tr|B6SNB7|B6SNB7_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.1  
tr|Q55F35|Q55F35_DICDI Putative uncharacterized protein OS=Dicty...    35   2.1  
tr|B4GDZ6|B4GDZ6_DROPE GL21920 OS=Drosophila persimilis GN=GL219...    34   3.7  
tr|A7QLR4|A7QLR4_VITVI Chromosome chr18 scaffold_121, whole geno...    34   4.8  
tr|A9RCR5|A9RCR5_PHYPA Predicted protein OS=Physcomitrella paten...    33   8.0  
tr|A4WMT7|A4WMT7_PYRAR Amidohydrolase OS=Pyrobaculum arsenaticum...    33   8.0  
tr|Q3JV89|Q3JV89_BURP1 Putative uncharacterized protein OS=Burkh...    33   8.1  
tr|B8C8P0|B8C8P0_THAPS Predicted protein OS=Thalassiosira pseudo...    33   8.1  
tr|B4NJB3|B4NJB3_DROWI GK12864 OS=Drosophila willistoni GN=GK128...    33   8.1  
tr|B4NJ85|B4NJ85_DROWI GK13847 OS=Drosophila willistoni GN=GK138...    33   8.1  

>tr|A9SHB1|A9SHB1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129925 PE=3 SV=1
          Length = 786

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = -2

Query: 260 GAHHPITPLSCFALAYIIIPSLSLQHYQRVDRQPSQSSPSVITFITTLHLCADTIS*CLL 81
           G  H   PLS  AL + ++PSL +Q Y R   Q  +    +   I T+   AD++S    
Sbjct: 31  GLQHLAAPLSAAALDHRLLPSLLMQDYARYGVQSLEDKQKLFRLIKTISTGADSVSEPST 90

Query: 80  ASTFSACTKQMQQ 42
            ST SA ++ M Q
Sbjct: 91  PST-SAFSRSMSQ 102


>tr|B6SNB7|B6SNB7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 252

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = -1

Query: 345 PCSSLQIKRRPAHSTMSSWRVKVEHQETRCPSSDNTTFVFRTRIHHHPES*PPALPKSGP 166
           PC+ L++     H +  S  + V       PSS   + + ++  HHH     PA+P   P
Sbjct: 56  PCNLLEMSHHHRHRSPPSSPLLV-------PSSPPRSLLEQSHHHHHKSPPMPAVPLPPP 108

Query: 165 SAFAKQPECHHFHNNPPSL 109
            + +K    HH+ +  PSL
Sbjct: 109 CSLSKM--SHHYSHRSPSL 125


>tr|Q55F35|Q55F35_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0189922 PE=4 SV=1
          Length = 933

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 213 HHHPES*PPALPKSGPSAFAKQPE---CHHFHNNPPSLRRHHFLMPS 82
           HH P+   P +    P+    QP+    HH H+ PP    HH  +P+
Sbjct: 362 HHQPQIYQPQVHHHQPNHHHHQPQPPQIHHHHHQPPPTHHHHHQLPT 408


>tr|B4GDZ6|B4GDZ6_DROPE GL21920 OS=Drosophila persimilis GN=GL21920
           PE=4 SV=1
          Length = 590

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 213 HHHPES*PPALPKSGPSAFAKQPECHHFHNNPPSLRRHHFLMP 85
           HHHP   PP  P   P      P  HH H +PP +     ++P
Sbjct: 136 HHHPPPGPPPPPPPPPPPPPPPPPHHHHHPHPPIIPPPPIIIP 178


>tr|A7QLR4|A7QLR4_VITVI Chromosome chr18 scaffold_121, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001744001
           PE=4 SV=1
          Length = 287

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 309 HSTMSSWRVKVEHQETRCPSSDNTTF 232
           HST+ SWR+K   Q T+CP +  T F
Sbjct: 163 HSTIMSWRIKQGKQPTKCPRTSRTFF 188


>tr|A9RCR5|A9RCR5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64196 PE=4 SV=1
          Length = 266

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +3

Query: 81  KKALRNGVCAEMEGCYESDDTRAALRRLTVHSLVMLEAKTRDDDVCECETRKWCYRMMGT 260
           KKAL N +CA       SD         T+H+       T     C C +R WCY+ +  
Sbjct: 107 KKALENTICA-------SDPW-------TLHNKGAYLCLT-----CACHSRSWCYQPLCV 147

Query: 261 LFLGAPL--SPSKNSWCCE 311
            ++G  +  + +   WCCE
Sbjct: 148 WYIGTGVIAALAAEVWCCE 166


>tr|A4WMT7|A4WMT7_PYRAR Amidohydrolase OS=Pyrobaculum arsenaticum
           (strain DSM 13514 / JCM 11321) GN=Pars_2158 PE=4 SV=1
          Length = 351

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +3

Query: 9   PEIHRVQVLWPLLHLLGASRES*RKKALRNGVCAEMEGCYESDDTRAALRRLTVHSLVML 188
           P+   VQV  PL H +   RE  R+  L +   +E E C+E  D   AL+ L    LV L
Sbjct: 150 PDYPNVQVASPLDHPVEYLRELRRRYRLVSTHISETEDCHEGGDLELALKELGADVLVHL 209

Query: 189 EAKTRDD 209
              T ++
Sbjct: 210 VHVTDEE 216


>tr|Q3JV89|Q3JV89_BURP1 Putative uncharacterized protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_1103 PE=4 SV=1
          Length = 683

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 25/81 (30%), Positives = 35/81 (43%)
 Frame = -1

Query: 321 RRPAHSTMSSWRVKVEHQETRCPSSDNTTFVFRTRIHHHPES*PPALPKSGPSAFAKQPE 142
           RR  H  +   R K  H++  C          R R H HP+  P    +  P   A  P+
Sbjct: 407 RRRKHRRLKHRRPKYRHRK-HCRRKH------RRRKHRHPK--PRHWKRRLPQHRA--PK 455

Query: 141 CHHFHNNPPSLRRHHFLMPSC 79
           CH   ++PP+ RR    +PSC
Sbjct: 456 CHDLTHHPPTFRRPMRCLPSC 476


>tr|B8C8P0|B8C8P0_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_24076 PE=4 SV=1
          Length = 2035

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 180 PKSGPSAFAKQPECHHFHNNPPSLRRHHFLMP 85
           P  GP    +QP C H H  PP+    H   P
Sbjct: 626 PLFGPYTIQQQPHCQHLHRYPPNYHNDHLQYP 657


>tr|B4NJB3|B4NJB3_DROWI GK12864 OS=Drosophila willistoni GN=GK12864
           PE=4 SV=1
          Length = 769

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = -1

Query: 279 VEHQETRCPSSDNTTFVFRTRIHHHPES*PPALPKSGPSAFAKQPECHHFHNNPPSLRRH 100
           V + +   PSS N +F+   +  HH       L  S  S  A+    HH H++PP++R+ 
Sbjct: 670 VHNSQQLLPSSGNQSFLDHQQQQHHQAH----LRASNASLQAQA--AHHTHHHPPTMRQQ 723

Query: 99  HFLMPSCVNFLCLHQANA 46
             L    +N      ANA
Sbjct: 724 QQLQHGGINSEASGSANA 741