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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918672
Clone id YMU001_000116_B12
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATCAACACCTCCCTCTACCACAGTACCACTCCAGCTCTTGGATGACTTAACTATCCCCA
TAAACCCTTATGAACTATTTGCCTTTGCTGGAGCTTTATGTTAGCTGTAAAGCTGCAAGC
ACTTATCACTAGAGAATCCATCTTTCAACCAACATTTGTCACAACCTGTGTTGGGTTCTG
AAGCACAGCCCAGATGATTTTTCAACTGTTGGTGATGAGCAGATAACCCAAAGCATCGTA
TTCAAACACCGTGGAACCTGCATAGCCTGCTGAATTTGCCCTTCTTTGACCAACTACACT
CGAACTCCACAGAAAGTATAGCTAAGCGCCTCACGAATGCCACCATTGAAATCTGAAGAA
TCTGCAGTTCATGCTTGACCTTACCAGTCTAATGAGGCAAGACAAAAGAACCAATTCCGG
TTCGTCTTAGCCCTTTAGGTCCAGCAACAAGTCGAACGAGGGAAAGCAACCCATGCATCT
CACTGAAATCATCATTCCCCGCTGCAATGTATAGACTCATAAATGATATTGCATAGTATA
CACGATCAGGAACT
■■Homology search results ■■ -
sp_hit_id Q6P3X8
Definition sp|Q6P3X8|PGBD2_HUMAN PiggyBac transposable element-derived protein 2 OS=Homo sapiens
Align length 75
Score (bit) 30.0
E-value 7.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918672|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B12.
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6P3X8|PGBD2_HUMAN PiggyBac transposable element-derived prot...    30   7.9  

>sp|Q6P3X8|PGBD2_HUMAN PiggyBac transposable element-derived protein
           2 OS=Homo sapiens GN=PGBD2 PE=2 SV=1
          Length = 592

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -2

Query: 364 QILQISMVAFVRRLAILSVEFECSWSKKGKFSRLCRFHGV*IRCFGLSAH---HQQLKNH 194
           Q  Q+ ++AF R +A + +E     + +G+ SR           F +  H   HQ  +  
Sbjct: 507 QDAQVDLLAFRRYIACVYLESNADTTSQGRRSRRLETESR----FDMIGHWIIHQDKRTR 562

Query: 193 LG-CASEPNTGCDKC 152
              C S+ NT C+KC
Sbjct: 563 CALCHSQTNTRCEKC 577
tr_hit_id Q8L0X1
Definition tr|Q8L0X1|Q8L0X1_9GAMM Acyl-CoA dehydrogenase B OS=Acinetobacter sp. M-1
Align length 74
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918672|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_B12.
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8L0X1|Q8L0X1_9GAMM Acyl-CoA dehydrogenase B OS=Acinetobacter...    39   0.14 
tr|A3TT84|A3TT84_9RHOB Acyl-CoA dehydrogenase family protein OS=...    35   2.7  
tr|A3SI50|A3SI50_9RHOB Acyl-CoA dehydrogenase family protein OS=...    35   3.5  
tr|A8LRD4|A8LRD4_DINSH Acyl-CoA dehydrogenase domain protein OS=...    34   4.6  
tr|Q63X89|Q63X89_BURPS Putative acyl-CoA dehydrogenase oxidoredu...    34   6.0  
tr|Q3JVY3|Q3JVY3_BURP1 Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|Q2T128|Q2T128_BURTA Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|A3NRK6|A3NRK6_BURP0 Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|A3N5W1|A3N5W1_BURP6 Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|B7CJ51|B7CJ51_BURPS Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|B1HFR3|B1HFR3_BURPS Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|A8KIR2|A8KIR2_BURPS Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|A8E9K7|A8E9K7_BURPS Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|A7V7W5|A7V7W5_BACUN Putative uncharacterized protein OS=Bacte...    34   6.0  
tr|A6FM30|A6FM30_9RHOB Acyl-CoA dehydrogenase-like protein OS=Ro...    34   6.0  
tr|A4LJ33|A4LJ33_BURPS Acyl-CoA dehydrogenase domain protein OS=...    34   6.0  
tr|Q9I460|Q9I460_PSEAE Probable acyl-CoA dehydrogenase OS=Pseudo...    33   7.8  
tr|Q02JC5|Q02JC5_PSEAB Putative acyl-CoA dehydrogenase OS=Pseudo...    33   7.8  
tr|B2HYK6|B2HYK6_ACIBC Acyl-CoA dehydrogenase OS=Acinetobacter b...    33   7.8  
tr|B0VRD7|B0VRD7_ACIBS Acyl-CoA dehydrogenase OS=Acinetobacter b...    33   7.8  
tr|B0V535|B0V535_ACIBY Acyl-CoA dehydrogenase OS=Acinetobacter b...    33   7.8  
tr|A6V8S5|A6V8S5_PSEA7 Probable acyl-CoA dehydrogenase OS=Pseudo...    33   7.8  
tr|A3M8P8|A3M8P8_ACIBT Acyl-CoA dehydrogenase OS=Acinetobacter b...    33   7.8  
tr|B7UWG6|B7UWG6_PSEAE Probable acyl-CoA dehydrogenase OS=Pseudo...    33   7.8  
tr|B7I8L7|B7I8L7_ACIBA Acyl-CoA dehydrogenase OS=Acinetobacter b...    33   7.8  
tr|B7GWN9|B7GWN9_ACIBA Acyl-CoA dehydrogenase, C-terminal domain...    33   7.8  
tr|A3LC33|A3LC33_PSEAE Putative uncharacterized protein OS=Pseud...    33   7.8  
tr|A3KRL6|A3KRL6_PSEAE Putative uncharacterized protein OS=Pseud...    33   7.8  

>tr|Q8L0X1|Q8L0X1_9GAMM Acyl-CoA dehydrogenase B OS=Acinetobacter
           sp. M-1 GN=acdB PE=4 SV=1
          Length = 599

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLPH*TGKVKHEL-QI 359
           YAIS   ++I+AG  D +E    + L RL   PKG +  GI  F++P+ T  +  +L  +
Sbjct: 189 YAISGEKIFISAGEHDMAENIIHIVLARLPGAPKGTK--GISLFIVPNSTSMLMVQLASV 246

Query: 358 LQISMVAFVRRLAI 317
           +Q  +V F  ++ I
Sbjct: 247 MQYVVVQFEHKMGI 260


>tr|A3TT84|A3TT84_9RHOB Acyl-CoA dehydrogenase family protein
           OS=Oceanicola batsensis HTCC2597 GN=OB2597_06245 PE=4
           SV=1
          Length = 592

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           YAI+   ++I+AG+ D SE    L L ++  GP+G++  G+  F++P
Sbjct: 187 YAITGQKIFISAGDHDMSENVIHLVLAKIPGGPEGIK--GVSLFIVP 231


>tr|A3SI50|A3SI50_9RHOB Acyl-CoA dehydrogenase family protein
           OS=Roseovarius nubinhibens ISM GN=ISM_02040 PE=4 SV=1
          Length = 591

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           YAIS   ++I+AG  D +E    L L ++  GP+G++  G+  F++P
Sbjct: 187 YAISGQKIFISAGEHDMAENIIHLVLAKIPGGPEGIK--GVSLFIVP 231


>tr|A8LRD4|A8LRD4_DINSH Acyl-CoA dehydrogenase domain protein
           OS=Dinoroseobacter shibae (strain DFL 12) GN=Dshi_0839
           PE=4 SV=1
          Length = 592

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           YAI+   ++I+AG  D SE    L L ++  GP+G++  GI  F++P
Sbjct: 187 YAITGQKIWISAGEHDMSENIIHLVLAKIPGGPEGVK--GISLFIVP 231


>tr|Q63X89|Q63X89_BURPS Putative acyl-CoA dehydrogenase
           oxidoreductase protein OS=Burkholderia pseudomallei
           GN=BPSL0648 PE=4 SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           Y+IS   ++I++G  DFS+    L L RL   PKG +  GI  F++P
Sbjct: 190 YSISGTKIFISSGEHDFSKNIVHLVLARLPDAPKGTK--GISLFIVP 234


>tr|Q3JVY3|Q3JVY3_BURP1 Acyl-CoA dehydrogenase domain protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_0857 PE=4 SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           Y+IS   ++I++G  DFS+    L L RL   PKG +  GI  F++P
Sbjct: 190 YSISGTKIFISSGEHDFSKNIVHLVLARLPDAPKGTK--GISLFIVP 234


>tr|Q2T128|Q2T128_BURTA Acyl-CoA dehydrogenase domain protein
           OS=Burkholderia thailandensis (strain E264 / ATCC 700388
           / DSM 13276 / CIP 106301) GN=BTH_I0564 PE=4 SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           Y+IS   ++I++G  DFS+    L L RL   PKG +  GI  F++P
Sbjct: 190 YSISGTKIFISSGEHDFSKNIVHLVLARLPDAPKGTK--GISLFIVP 234


>tr|A3NRK6|A3NRK6_BURP0 Acyl-CoA dehydrogenase domain protein
           OS=Burkholderia pseudomallei (strain 1106a)
           GN=BURPS1106A_0695 PE=4 SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           Y+IS   ++I++G  DFS+    L L RL   PKG +  GI  F++P
Sbjct: 190 YSISGTKIFISSGEHDFSKNIVHLVLARLPDAPKGTK--GISLFIVP 234


>tr|A3N5W1|A3N5W1_BURP6 Acyl-CoA dehydrogenase domain protein
           OS=Burkholderia pseudomallei (strain 668)
           GN=BURPS668_0680 PE=4 SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           Y+IS   ++I++G  DFS+    L L RL   PKG +  GI  F++P
Sbjct: 190 YSISGTKIFISSGEHDFSKNIVHLVLARLPDAPKGTK--GISLFIVP 234


>tr|B7CJ51|B7CJ51_BURPS Acyl-CoA dehydrogenase domain protein
           OS=Burkholderia pseudomallei 576 GN=BUC_0905 PE=4 SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 535 YAISFMSLYIAAGNDDFSEMHGLLSLVRLVAGPKGLRRTGIGSFVLP 395
           Y+IS   ++I++G  DFS+    L L RL   PKG +  GI  F++P
Sbjct: 190 YSISGTKIFISSGEHDFSKNIVHLVLARLPDAPKGTK--GISLFIVP 234