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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918673
Clone id YMU001_000116_C01
Library
Length 171
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGATTGTGGTGGCCCACTGTGTTAAAGGATGCTCATGAGTATGCTAAAAGATGTGTGA
ATTTGCCGAAAAGTTAGGACAGCCAGATTCTAGAGATAGAATGACAGACCATCCTATTTA
CCTTTGGAACCTTTTCAGAAGTGGGGAATGGTCTTTGTGGGACCTGTAAAG
■■Homology search results ■■ -
sp_hit_id Q90600
Definition sp|Q90600|RB_CHICK Retinoblastoma-associated protein OS=Gallus gallus
Align length 21
Score (bit) 28.9
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918673|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_C01.
         (171 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90600|RB_CHICK Retinoblastoma-associated protein OS=Gallus g...    29   8.3  
sp|P92516|M750_ARATH Uncharacterized mitochondrial protein AtMg0...    29   8.3  

>sp|Q90600|RB_CHICK Retinoblastoma-associated protein OS=Gallus
           gallus GN=RB1 PE=1 SV=1
          Length = 921

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 148 FPTSEKVPKVNRMVCHSISRI 86
           F TSEK  K+N+MVC+S S +
Sbjct: 832 FGTSEKFQKINQMVCNSESHV 852


>sp|P92516|M750_ARATH Uncharacterized mitochondrial protein
          AtMg00750 OS=Arabidopsis thaliana GN=AtMg00750 PE=4
          SV=1
          Length = 119

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 3  GLWWPTVLKDAHEYAKRC 56
          G +WPT  KDAH +   C
Sbjct: 39 GFYWPTTFKDAHGFVSSC 56
tr_hit_id Q9MAR5
Definition tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana
Align length 18
Score (bit) 36.6
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918673|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_C01.
         (171 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana ...    37   0.058
tr|Q0ZCD3|Q0ZCD3_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      33   0.060
tr|Q2LEC5|Q2LEC5_9ROSI Integrase-like protein (Fragment) OS=(Pop...    33   0.090
tr|A5C265|A5C265_VITVI Putative uncharacterized protein OS=Vitis...    34   0.32 
tr|A5AKV0|A5AKV0_VITVI Putative uncharacterized protein OS=Vitis...    34   0.32 
tr|A5AFU0|A5AFU0_VITVI Putative uncharacterized protein OS=Vitis...    34   0.33 
tr|A5AWD1|A5AWD1_VITVI Putative uncharacterized protein OS=Vitis...    34   0.33 
tr|A5B2X9|A5B2X9_VITVI Putative uncharacterized protein OS=Vitis...    35   0.33 
tr|A5BT93|A5BT93_VITVI Putative uncharacterized protein OS=Vitis...    34   0.33 
tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1      33   0.34 
tr|A5BB70|A5BB70_VITVI Putative uncharacterized protein OS=Vitis...    34   0.34 
tr|A5B854|A5B854_VITVI Putative uncharacterized protein OS=Vitis...    34   0.34 
tr|A5BVM1|A5BVM1_VITVI Putative uncharacterized protein OS=Vitis...    34   0.34 
tr|A5BPC4|A5BPC4_VITVI Putative uncharacterized protein OS=Vitis...    34   0.34 
tr|A5C7Z0|A5C7Z0_VITVI Putative uncharacterized protein OS=Vitis...    34   0.35 
tr|A5C050|A5C050_VITVI Putative uncharacterized protein OS=Vitis...    35   0.42 
tr|Q75G47|Q75G47_ORYSJ Putative polyprotein OS=Oryza sativa subs...    32   0.55 
tr|Q9SHM5|Q9SHM5_ARATH F7F22.15 OS=Arabidopsis thaliana PE=4 SV=1      33   0.70 
tr|Q9SHM3|Q9SHM3_ARATH F7F22.17 OS=Arabidopsis thaliana PE=4 SV=1      33   0.70 
tr|A5BG34|A5BG34_VITVI Putative uncharacterized protein OS=Vitis...    32   0.70 
tr|A5BRS7|A5BRS7_VITVI Putative uncharacterized protein OS=Vitis...    32   1.2  
tr|A5BTT2|A5BTT2_VITVI Putative uncharacterized protein OS=Vitis...    32   1.2  
tr|A5BM14|A5BM14_VITVI Putative uncharacterized protein OS=Vitis...    32   1.2  
tr|Q7XE58|Q7XE58_ORYSJ Retrotransposon protein, putative, Ty3-gy...    30   1.2  
tr|A5BAE8|A5BAE8_VITVI Putative uncharacterized protein OS=Vitis...    32   1.5  
tr|A7QJX4|A7QJX4_VITVI Chromosome undetermined scaffold_108, who...    32   1.5  
tr|A5ATG4|A5ATG4_VITVI Putative uncharacterized protein OS=Vitis...    32   1.5  
tr|A5BXW5|A5BXW5_VITVI Putative uncharacterized protein OS=Vitis...    32   1.6  
tr|A5BFN6|A5BFN6_VITVI Putative uncharacterized protein OS=Vitis...    32   1.6  
tr|A5BID3|A5BID3_VITVI Putative uncharacterized protein OS=Vitis...    32   1.6  

>tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana
           GN=F28H19.8 PE=4 SV=1
          Length = 640

 Score = 36.6 bits (83), Expect(2) = 0.058
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 3   GLWWPTVLKDAHEYAKRC 56
           GLWWP++ KDAHE+  RC
Sbjct: 518 GLWWPSMFKDAHEHITRC 535



 Score = 23.1 bits (48), Expect(2) = 0.058
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 76  RTARF*R*NDRPS--YLPLEPFQKWGMVFVGP 165
           R     R N+ P    L +E F  WG+ F+GP
Sbjct: 540 RVGNISRRNEMPQNPILEVEVFDVWGIDFMGP 571


>tr|Q0ZCD3|Q0ZCD3_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1263

 Score = 33.1 bits (74), Expect(3) = 0.060
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 3    GLWWPTVLKDAHEYAKRCVNLPK 71
            G +WPT+ KD+H + K C N  K
Sbjct: 1090 GFYWPTMFKDSHAFCKTCENCQK 1112



 Score = 23.5 bits (49), Expect(3) = 0.060
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 50   KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
            K CE  +KLG    R  M  +PI +  +F
Sbjct: 1105 KTCENCQKLGSISKRHMMPLNPILVIEIF 1133



 Score = 21.6 bits (44), Expect(3) = 0.060
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 118  LPLEPFQKWGMVFVGP 165
            L +E F  WG+ F+GP
Sbjct: 1128 LVIEIFDCWGIDFMGP 1143


>tr|Q2LEC5|Q2LEC5_9ROSI Integrase-like protein (Fragment)
          OS=(Populus tomentosa x P. bolleana) x P. tomentosa
          var. truncata PE=4 SV=1
          Length = 123

 Score = 33.1 bits (74), Expect(3) = 0.090
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 3  GLWWPTVLKDAHEYAKRCVNLPK 71
          G +WPT+ KD+H + K C N  K
Sbjct: 16 GFYWPTMFKDSHAFCKTCENCQK 38



 Score = 23.5 bits (49), Expect(3) = 0.090
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 50  KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
           K CE  +KLG    R  M  +PI +  +F
Sbjct: 31  KTCENCQKLGSISKRHMMPLNPILVIEIF 59



 Score = 21.6 bits (44), Expect(3) = 0.090
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 118 LPLEPFQKWGMVFVGP 165
           L +E F  WG+ F+GP
Sbjct: 54  LVIEIFDCWGIDFMGP 69


>tr|A5C265|A5C265_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_009564 PE=4 SV=1
          Length = 2225

 Score = 34.3 bits (77), Expect(2) = 0.32
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 3    GLWWPTVLKDAHEYAKRC 56
            G WWP++ KDAHE +K C
Sbjct: 1800 GFWWPSLFKDAHEVSKGC 1817



 Score = 22.7 bits (47), Expect(2) = 0.32
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 50   KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
            K C+  ++LG+   R+ M  +PI + +LF
Sbjct: 1815 KGCDKCQRLGKLSRRNMMPLNPILIVDLF 1843


>tr|A5AKV0|A5AKV0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035671 PE=4 SV=1
          Length = 2067

 Score = 34.3 bits (77), Expect(2) = 0.32
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 3   GLWWPTVLKDAHEYAKRC 56
           G WWP++ KDAHE +K C
Sbjct: 508 GFWWPSLFKDAHEVSKGC 525



 Score = 22.7 bits (47), Expect(2) = 0.32
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
           K C+  ++LG+   R+ M  +PI + +LF
Sbjct: 523 KGCDKCQRLGKLSRRNMMPLNPILIVDLF 551


>tr|A5AFU0|A5AFU0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007452 PE=4 SV=1
          Length = 1923

 Score = 34.3 bits (77), Expect(2) = 0.33
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 3    GLWWPTVLKDAHEYAKRC 56
            G WWP++ KDAHE +K C
Sbjct: 1394 GFWWPSLFKDAHEISKGC 1411



 Score = 22.7 bits (47), Expect(2) = 0.33
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 50   KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
            K C+  ++LG+   R+ M  +PI + +LF
Sbjct: 1409 KGCDKCQRLGKLSRRNMMPLNPILIVDLF 1437


>tr|A5AWD1|A5AWD1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_028047 PE=4 SV=1
          Length = 1817

 Score = 34.3 bits (77), Expect(2) = 0.33
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 3    GLWWPTVLKDAHEYAKRC 56
            G WWP++ KDAHE +K C
Sbjct: 1489 GFWWPSLFKDAHEVSKGC 1506



 Score = 22.7 bits (47), Expect(2) = 0.33
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 50   KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
            K C+  ++LG+   R+ M  +PI + +LF
Sbjct: 1504 KGCDKCQRLGKLSRRNMMPLNPILIVDLF 1532


>tr|A5B2X9|A5B2X9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_011467 PE=4 SV=1
          Length = 1595

 Score = 34.7 bits (78), Expect(2) = 0.33
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 3    GLWWPTVLKDAHEYAKRC 56
            G WWP++ KDAH   KRC
Sbjct: 1253 GFWWPSLFKDAHSMCKRC 1270



 Score = 22.3 bits (46), Expect(2) = 0.33
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 50   KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
            K C+  ++LG+   R+ M  +PI + ++F
Sbjct: 1268 KRCDRCQRLGKLTRRNMMPLNPILIVDIF 1296


>tr|A5BT93|A5BT93_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001028 PE=4 SV=1
          Length = 1184

 Score = 34.3 bits (77), Expect(2) = 0.33
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 3   GLWWPTVLKDAHEYAKRC 56
           G WWP++ KDAHE +K C
Sbjct: 753 GFWWPSLFKDAHEVSKGC 770



 Score = 22.7 bits (47), Expect(2) = 0.33
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
           K C+  ++LG+   R+ M  +PI + +LF
Sbjct: 768 KGCDKCQRLGKLSRRNMMPLNPILIVDLF 796


>tr|Q0ZCB7|Q0ZCB7_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
          Length = 1332

 Score = 33.1 bits (74), Expect(3) = 0.34
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 3   GLWWPTVLKDAHEYAKRCVNLPK 71
           G +WPT+ KD+H + K C N  K
Sbjct: 853 GFYWPTMFKDSHAFCKTCENYQK 875



 Score = 21.6 bits (44), Expect(3) = 0.34
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 118 LPLEPFQKWGMVFVGP 165
           L +E F  WG+ F+GP
Sbjct: 891 LVIEIFDCWGIDFMGP 906



 Score = 20.8 bits (42), Expect(3) = 0.34
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 50  KMCEFAEKLGQPDSRDRMTDHPIYLWNLF 136
           K CE  +KLG       M  +PI +  +F
Sbjct: 868 KTCENYQKLGSISKHHMMPLNPILVIEIF 896