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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918678
Clone id YMU001_000116_C06
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACGCTGAGGAATACACATACACCCCTTTTCCTTTGTTCAAAGATCTGTTAAGCACAAAAC
ACAAACACAAACACAAACACACACACACACACACACACCCTCTTTGTCATGGCTAGCACA
TACACCTCTCACTCGTCTTACAACCTCGATGTTGGCACCCCTACACCCTCATGCGCGGTG
GAGTAACTCCATCAGATGATGTGGCATCCAGAATCCTTGAATTCATTCAGATGACAAACA
CCCTCAACTCTAAACTGTGATTCATAGCAGATCAATCTACTTCTAACTTTCTCCCCTCAT
GATGTAGATGAACGTCACCAATAACCCTTCTGAATGGACCACTGATTCACCTCTCTCAGC
ACCAACCCTGGAGCAACAAGTATTCTTGTATCAACAAGAATTAGACATTGCAAATCAATG
CCTTGCAGTGAATGATCA
■■Homology search results ■■ -
sp_hit_id P24599
Definition sp|P24599|T2D1_HERAU Type-2 restriction enzyme HgiDI OS=Herpetosiphon aurantiacus
Align length 45
Score (bit) 33.1
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918678|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_C06.
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24599|T2D1_HERAU Type-2 restriction enzyme HgiDI OS=Herpetos...    33   0.52 
sp|P25261|T2G1_HERAU Type-2 restriction enzyme HgiGI (Fragment) ...    31   2.6  

>sp|P24599|T2D1_HERAU Type-2 restriction enzyme HgiDI
           OS=Herpetosiphon aurantiacus GN=hgiDIR PE=4 SV=1
          Length = 359

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 153 WHPYTLMRGGVTPSDDVASRILEFIQMTNTLNSKL*FIADQSTSN 287
           +HPYT +  G TP+ DV    L+  Q+ N    KL  I D +T+N
Sbjct: 88  YHPYTELIIGKTPAIDVVISNLQNSQIINAFEIKLTAIPDNTTAN 132


>sp|P25261|T2G1_HERAU Type-2 restriction enzyme HgiGI (Fragment)
           OS=Herpetosiphon aurantiacus GN=hgiGIR PE=4 SV=1
          Length = 335

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 153 WHPYTLMRGGVTPSDDVASRILEFIQMTNTLNSKL*FIADQSTS 284
           +HPYT +  G TP+ DV    L+  Q+ N    KL  I D +T+
Sbjct: 64  YHPYTELIIGKTPAIDVVISNLQNSQIINAFEIKLTAIPDNTTA 107
tr_hit_id Q5N5H7
Definition tr|Q5N5H7|Q5N5H7_SYNP6 Putative uncharacterized protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Align length 43
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918678|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_C06.
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5N5H7|Q5N5H7_SYNP6 Putative uncharacterized protein OS=Synec...    33   5.4  
tr|Q31NN7|Q31NN7_SYNE7 Putative uncharacterized protein OS=Synec...    33   5.4  
tr|B0BAY0|B0BAY0_CHLTB Polymorphic outer membrane protein OS=Chl...    33   7.1  
tr|B0B9A1|B0B9A1_CHLT2 Polymorphic outer membrane protein OS=Chl...    33   7.1  
tr|Q83UL8|Q83UL8_CHLTR Polymorphic membrane protein E (Fragment)...    33   7.1  
tr|Q2TCJ8|Q2TCJ8_CHLTR Polymorphic membrane protein E OS=Chlamyd...    33   7.1  
tr|A4ZW53|A4ZW53_CHLTR Polymorphic membrane protein E OS=Chlamyd...    33   7.1  

>tr|Q5N5H7|Q5N5H7_SYNP6 Putative uncharacterized protein
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=syc0251_c PE=4 SV=1
          Length = 162

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQEL-DIANQCLAVN 433
           +N  N+PS+WT D  L+  +  Q   L +Q+L D+  Q  AVN
Sbjct: 55  INFLNSPSDWTVDLSLAEASQRQDAELARQQLQDLRQQATAVN 97


>tr|Q31NN7|Q31NN7_SYNE7 Putative uncharacterized protein
           OS=Synechococcus elongatus (strain PCC 7942)
           GN=Synpcc7942_1302 PE=4 SV=1
          Length = 158

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQEL-DIANQCLAVN 433
           +N  N+PS+WT D  L+  +  Q   L +Q+L D+  Q  AVN
Sbjct: 51  INFLNSPSDWTVDLSLAEASQRQDAELARQQLQDLRQQATAVN 93


>tr|B0BAY0|B0BAY0_CHLTB Polymorphic outer membrane protein
           OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis)
           GN=pmpE PE=3 SV=1
          Length = 965

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQELDIANQCLA 427
           MN T  P  WT +       L  Q  LY+QEL+IA Q LA
Sbjct: 875 MNATQRPQAWTVE-------LAYQPVLYRQELEIATQLLA 907


>tr|B0B9A1|B0B9A1_CHLT2 Polymorphic outer membrane protein
           OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC
           VR902B) GN=pmpE PE=3 SV=1
          Length = 965

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQELDIANQCLA 427
           MN T  P  WT +       L  Q  LY+QEL+IA Q LA
Sbjct: 875 MNATQRPQAWTVE-------LAYQPVLYRQELEIATQLLA 907


>tr|Q83UL8|Q83UL8_CHLTR Polymorphic membrane protein E (Fragment)
           OS=Chlamydia trachomatis GN=pmpE PE=4 SV=1
          Length = 938

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQELDIANQCLA 427
           MN T  P  WT +       L  Q  LY+QEL+IA Q LA
Sbjct: 849 MNATQRPQAWTVE-------LAYQPVLYRQELEIATQLLA 881


>tr|Q2TCJ8|Q2TCJ8_CHLTR Polymorphic membrane protein E OS=Chlamydia
           trachomatis GN=pmpE PE=4 SV=1
          Length = 965

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQELDIANQCLA 427
           MN T  P  WT +       L  Q  LY+QEL+IA Q LA
Sbjct: 875 MNATQRPQAWTVE-------LAYQPVLYRQELEIATQLLA 907


>tr|A4ZW53|A4ZW53_CHLTR Polymorphic membrane protein E OS=Chlamydia
           trachomatis GN=pmpE PE=4 SV=1
          Length = 965

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 MNVTNNPSEWTTDSPLSAPTLEQQVFLYQQELDIANQCLA 427
           MN T  P  WT +       L  Q  LY+QEL+IA Q LA
Sbjct: 875 MNATQRPQAWTVE-------LAYQPVLYRQELEIATQLLA 907