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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918683
Clone id YMU001_000116_C11
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAACCCGATGTACTGAACCTTCTTGTTCTTGTCAAGCACGGCAAACACGGAGGCTGCAGT
ATTTGGCTCAACTGGAGGTTTGATTCTACCGTGTGAATTGATAAACCCATTAATGGGGAG
CTCGTTTAGTGAAGGGATAGTGACAGTAGAGGTGGTTGGAGGAGCGGCCGCAGACGCAAC
CAAAGCAAGGAGGAATGTTTTCTGTGTGCTGTTGTTAAGTGTGGCTGTGGATTCCTTTCT
ACAAACCCATAACCCAGATTTCCTCAGCCCATTAAAGGAGGACGGTATTTTGGCTGATGC
CGAGCTCTTCTGCGTGTAGCTATGGCGAGAACCCACATGACCCCGCTGCAGCAGCAATCT
GCTGGCGGGATGAAAGAGACGATACCATTTTGAGGTTCTGCAGGCTAATGTAAGTAATGT
AGATGCTGCGGATGTAGAGCTCTGCTACCTTCCTTCGCTGCTTCAGA
■■Homology search results ■■ -
sp_hit_id Q822F8
Definition sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae
Align length 77
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918683|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_C11.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae...    32   1.8  
sp|Q9N2B6|5HT1E_PANTR 5-hydroxytryptamine receptor 1E (Fragment)...    31   2.3  
sp|P28566|5HT1E_HUMAN 5-hydroxytryptamine receptor 1E OS=Homo sa...    31   2.3  
sp|Q6VB83|5HT1E_CAVPO 5-hydroxytryptamine receptor 1E OS=Cavia p...    31   2.3  
sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis ...    30   4.0  
sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis ...    30   4.0  
sp|Q2T9K6|FEM1C_XENLA Protein fem-1 homolog C OS=Xenopus laevis ...    30   4.0  
sp|A7MB89|FEM1C_BOVIN Protein fem-1 homolog C OS=Bos taurus GN=F...    30   4.0  
sp|Q8CEF1|FEM1C_MOUSE Protein fem-1 homolog C OS=Mus musculus GN...    30   6.8  
sp|Q96JP0|FEM1C_HUMAN Protein fem-1 homolog C OS=Homo sapiens GN...    30   6.8  
sp|P97765|WBP2_MOUSE WW domain-binding protein 2 OS=Mus musculus...    29   8.9  
sp|Q6NWF6|K2C8_DANRE Keratin, type II cytoskeletal 8 OS=Danio re...    29   8.9  

>sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae
           GN=aroC PE=3 SV=1
          Length = 359

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
 Frame = +2

Query: 98  LINPLMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQT---------- 247
           L++PL G   S       V  G  A    A  +++C+  LS      ++T          
Sbjct: 115 LVDPLGGGRSSARETACRVAAGVIAAKILAHYDIYCLAFLSKLGKESIETYPKLSKEFAQ 174

Query: 248 --HNPDFLSPLKEDGIL 292
             +N  FLSPL  D IL
Sbjct: 175 NIYNSPFLSPLDNDSIL 191


>sp|Q9N2B6|5HT1E_PANTR 5-hydroxytryptamine receptor 1E (Fragment)
           OS=Pan troglodytes GN=HTR1E PE=3 SV=1
          Length = 363

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 387 WYRLFHPASRLLLQRG---HVGSRHSYTQKSSASAKIPSSF 274
           +YR++H A  L  +RG   H+ +R + +Q S AS K+  +F
Sbjct: 202 YYRIYHAAKSLYQKRGSSRHLSNRSTDSQNSFASCKLTQTF 242


>sp|P28566|5HT1E_HUMAN 5-hydroxytryptamine receptor 1E OS=Homo
           sapiens GN=HTR1E PE=1 SV=1
          Length = 365

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 387 WYRLFHPASRLLLQRG---HVGSRHSYTQKSSASAKIPSSF 274
           +YR++H A  L  +RG   H+ +R + +Q S AS K+  +F
Sbjct: 202 YYRIYHAAKSLYQKRGSSRHLSNRSTDSQNSFASCKLTQTF 242


>sp|Q6VB83|5HT1E_CAVPO 5-hydroxytryptamine receptor 1E OS=Cavia
           porcellus GN=5HT1E PE=1 SV=1
          Length = 365

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 387 WYRLFHPASRLLLQRG---HVGSRHSYTQKSSASAKIPSSF 274
           +YR++H A  L  +RG   H+ +R + +Q S AS K+  +F
Sbjct: 202 YYRIYHAAKSLYQKRGSSRHLSNRSTDSQNSFASCKLTQTF 242


>sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis virus
            (strain emc-d diabetogenic) PE=1 SV=2
          Length = 2292

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47   TEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVA 226
            T+ A   S    +LP +L + +MGS+F+        +  A  DA KA R +  +  LS A
Sbjct: 1057 TQGAAVSSMAQTLLPNDLASKVMGSAFT-------ALLDANEDAQKAMRIIKTLSSLSDA 1109

Query: 227  VDSFLQT-HNPDFLSPL 274
             ++  +T +NP+F   L
Sbjct: 1110 WENVKETLNNPEFWKQL 1126


>sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis virus
            (strain emc-b nondiabetogenic) PE=3 SV=1
          Length = 2292

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47   TEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVA 226
            T+ A   S    +LP +L + +MGS+F+        +  A  DA KA R +  +  LS A
Sbjct: 1057 TQGAAVSSMAQTLLPNDLASKVMGSAFT-------ALLDANEDAQKAMRIIKTLSSLSDA 1109

Query: 227  VDSFLQT-HNPDFLSPL 274
             ++  +T +NP+F   L
Sbjct: 1110 WENVKETLNNPEFWKQL 1126


>sp|Q2T9K6|FEM1C_XENLA Protein fem-1 homolog C OS=Xenopus laevis
           GN=fem1c PE=2 SV=1
          Length = 617

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 110 LMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQTHNPDFLSPLKEDGI 289
           ++G S  +    +   G   AD+   +R   C+ L   A+D  +Q +N D LSP+    +
Sbjct: 329 ILGPSHPDTSYYIRYRGAVYADSGNFKR---CINLWKYALD--MQQNNLDPLSPMTASSL 383

Query: 290 LADAELF 310
           L+ AELF
Sbjct: 384 LSFAELF 390


>sp|A7MB89|FEM1C_BOVIN Protein fem-1 homolog C OS=Bos taurus
           GN=FEM1C PE=2 SV=1
          Length = 617

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 110 LMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQTHNPDFLSPLKEDGI 289
           ++G S  +    +   G   AD+   +R   C+ L   A+D  +Q +N D LSP+    +
Sbjct: 329 ILGPSHPDTSYYIRYRGAVYADSGNFKR---CINLWKYALD--MQQNNLDPLSPMTASSL 383

Query: 290 LADAELF 310
           L+ AELF
Sbjct: 384 LSFAELF 390


>sp|Q8CEF1|FEM1C_MOUSE Protein fem-1 homolog C OS=Mus musculus
           GN=Fem1c PE=2 SV=1
          Length = 617

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +2

Query: 110 LMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQTHNPDFLSPLKEDGI 289
           ++G S  +    +   G   AD+   +R   C+ L   A+D  +Q  N D LSP+    +
Sbjct: 329 ILGPSHPDTSYYIRYRGAVYADSGNFKR---CINLWKYALD--MQQSNLDPLSPMTASSL 383

Query: 290 LADAELF 310
           L+ AELF
Sbjct: 384 LSFAELF 390


>sp|Q96JP0|FEM1C_HUMAN Protein fem-1 homolog C OS=Homo sapiens
           GN=FEM1C PE=2 SV=1
          Length = 617

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +2

Query: 110 LMGSSFSEGIVTVEVVGGAAADATKARRNVFCVLLLSVAVDSFLQTHNPDFLSPLKEDGI 289
           ++G S  +    +   G   AD+   +R   C+ L   A+D  +Q  N D LSP+    +
Sbjct: 329 ILGPSHPDTSYYIRYRGAVYADSGNFKR---CINLWKYALD--MQQSNLDPLSPMTASSL 383

Query: 290 LADAELF 310
           L+ AELF
Sbjct: 384 LSFAELF 390
tr_hit_id B1J4Q9
Definition tr|B1J4Q9|B1J4Q9_PSEPW Putative uncharacterized protein OS=Pseudomonas putida (strain W619)
Align length 72
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918683|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_C11.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1J4Q9|B1J4Q9_PSEPW Putative uncharacterized protein OS=Pseud...    35   2.5  
tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein...    34   4.2  
tr|Q8DIK3|Q8DIK3_THEEB Tll1582 protein OS=Thermosynechococcus el...    33   7.2  
tr|A5EJZ3|A5EJZ3_BRASB Putative Branched-chain amino acid ABC tr...    33   9.4  
tr|A4YVA1|A4YVA1_BRASO Putative Branched-chain amino acid ABC tr...    33   9.4  
tr|A1HS95|A1HS95_9FIRM Anaerobic ribonucleoside-triphosphate red...    33   9.4  

>tr|B1J4Q9|B1J4Q9_PSEPW Putative uncharacterized protein
           OS=Pseudomonas putida (strain W619) GN=PputW619_0216
           PE=4 SV=1
          Length = 207

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = -2

Query: 448 VAELYIRSI-----YITYISLQNLKMVSSLSSRQQIAAAAGSCGFSP*LHAEELGISQNT 284
           ++ELYI S+     Y+T I L    ++ S  +  QI  AA +CG       E LG+  +T
Sbjct: 117 ISELYIGSLPLSVAYLTPIMLVFTNLLFSTIALIQIQQAANACG------GEPLGLQNST 170

Query: 283 VLL*WAEEIWVM 248
           +   WA  +WV+
Sbjct: 171 IT--WANVLWVI 180


>tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_3888 PE=4 SV=1
          Length = 290

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 17  TFLFLSSTANTEAAVFGSTGGLILPCELINPLMGSSF-SEGIVTVEVVGGA 166
           T L  S T    AA+ G  GGL  P   + P MG++F  E  VTV VVGGA
Sbjct: 184 TRLIYSLTFGLGAALAGLAGGLYAPTMTLVPTMGATFIMEAFVTV-VVGGA 233


>tr|Q8DIK3|Q8DIK3_THEEB Tll1582 protein OS=Thermosynechococcus
           elongatus (strain BP-1) GN=tll1582 PE=4 SV=1
          Length = 177

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -3

Query: 123 ELPINGFINSHGRIKPPVEPNTAASVFAVLDKNKKVQYIGF 1
           ELP++ +I+  GR+ P ++   A  ++A+ D    VQYIG+
Sbjct: 10  ELPLHPYIDGSGRVAPDLK--GAIGLYAIFDAAGSVQYIGY 48


>tr|A5EJZ3|A5EJZ3_BRASB Putative Branched-chain amino acid ABC
           transporter (Permease protein) OS=Bradyrhizobium sp.
           (strain BTAi1 / ATCC BAA-1182) GN=BBta_4451 PE=4 SV=1
          Length = 288

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +2

Query: 35  STANTEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAA 169
           ST    AAV G  GGL+ P   I P+MG ++        V GGAA
Sbjct: 188 STFALGAAVTGLAGGLLAPVSGITPVMGGAYVAKAFMTVVGGGAA 232


>tr|A4YVA1|A4YVA1_BRASO Putative Branched-chain amino acid ABC
           transporter (Permease protein) OS=Bradyrhizobium sp.
           (strain ORS278) GN=BRADO4075 PE=4 SV=1
          Length = 288

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +2

Query: 35  STANTEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAA 169
           ST    AAV G  GGL+ P   I P+MG ++        V GGAA
Sbjct: 188 STFALGAAVTGLAGGLLAPVSGITPVMGGAYVAKAFMTVVGGGAA 232


>tr|A1HS95|A1HS95_9FIRM Anaerobic ribonucleoside-triphosphate
           reductase OS=Thermosinus carboxydivorans Nor1
           GN=TcarDRAFT_0565 PE=4 SV=1
          Length = 671

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 111 NGFINSHGRIKPPVEPNTAASVFAVL 34
           NGF N HG I+PP  P++A ++ A++
Sbjct: 182 NGFNNGHGYIRPPKRPSSATALAAII 207