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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918691
Clone id YMU001_000116_D08
Library
Length 326
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATTGCTATTTTGGTCTCCACCTCACCAAGCGCCAGTTTGATTTGC
CCCACAGAAGCAGGGCCATAATCCACATCTATACGGTCATCATGCTTTGAGCTGCCACTT
ATACCCAGCTGCTCCAAGAGCTGTAGCTTCTGCCTTTGCAGAACTTCCAATTCCTCGGTG
TACATCTCTTTCCGATTTCTTATAATAGCCATCAAATTGAACCTGATCTCACTCTTGAAG
TATTTTTCAATCCTTTCCTGTATTACTGGCTGAACTTTCTTCAACCACTCCATGCTATCC
GGCTCTCCACTTCCACACTCTCCAAG
■■Homology search results ■■ -
sp_hit_id Q06AT3
Definition sp|Q06AT3|UCHL5_PIG Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Sus scrofa
Align length 48
Score (bit) 51.6
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918691|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_D08.
         (308 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06AT3|UCHL5_PIG Ubiquitin carboxyl-terminal hydrolase isozym...    52   1e-06
sp|Q9Y5K5|UCHL5_HUMAN Ubiquitin carboxyl-terminal hydrolase isoz...    52   1e-06
sp|Q9XSJ0|UCHL5_BOVIN Ubiquitin carboxyl-terminal hydrolase isoz...    52   1e-06
sp|Q9WUP7|UCHL5_MOUSE Ubiquitin carboxyl-terminal hydrolase isoz...    51   2e-06
sp|Q54N38|UCHL5_DICDI Ubiquitin carboxyl-terminal hydrolase isoz...    50   5e-06
sp|Q09444|UBH4_CAEEL Probable ubiquitin carboxyl-terminal hydrol...    49   1e-05
sp|Q9UUB6|UBLH2_SCHPO Ubiquitin carboxyl-terminal hydrolase 2 OS...    35   0.089
sp|Q99PU7|BAP1_MOUSE Ubiquitin carboxyl-terminal hydrolase BAP1 ...    32   0.99 
sp|Q92560|BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1 ...    32   0.99 
sp|P51008|HEMZ_RHOS4 Coproporphyrinogen III oxidase, anaerobic 2...    30   3.8  
sp|P45972|YNZB_CAEEL Uncharacterized protein T09A5.12 OS=Caenorh...    30   4.9  
sp|Q8L783|CAX5_ARATH Vacuolar cation/proton exchanger 5 OS=Arabi...    30   4.9  
sp|Q8R6V4|Y2680_THETN UPF0247 protein TTE2680 OS=Thermoanaerobac...    29   6.4  
sp|Q9ZDL6|Y311_RICPR Putative uncharacterized protein RP311 OS=R...    29   8.4  

>sp|Q06AT3|UCHL5_PIG Ubiquitin carboxyl-terminal hydrolase isozyme
           L5 OS=Sus scrofa GN=UCHL5 PE=2 SV=1
          Length = 329

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -1

Query: 305 GECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMY 162
           G    G  +  +W+  V+PVI++RI+KY + EIRFNLMAI+ +RK +Y
Sbjct: 184 GPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIY 231


>sp|Q9Y5K5|UCHL5_HUMAN Ubiquitin carboxyl-terminal hydrolase isozyme
           L5 OS=Homo sapiens GN=UCHL5 PE=1 SV=3
          Length = 329

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -1

Query: 305 GECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMY 162
           G    G  +  +W+  V+PVI++RI+KY + EIRFNLMAI+ +RK +Y
Sbjct: 184 GPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIY 231


>sp|Q9XSJ0|UCHL5_BOVIN Ubiquitin carboxyl-terminal hydrolase isozyme
           L5 OS=Bos taurus GN=UCHL5 PE=2 SV=1
          Length = 328

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -1

Query: 305 GECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMY 162
           G    G  +  +W+  V+PVI++RI+KY + EIRFNLMAI+ +RK +Y
Sbjct: 184 GPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIY 231


>sp|Q9WUP7|UCHL5_MOUSE Ubiquitin carboxyl-terminal hydrolase isozyme
           L5 OS=Mus musculus GN=Uchl5 PE=2 SV=2
          Length = 329

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -1

Query: 305 GECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMY 162
           G    G  +  +W+  V+PVI++RI+KY + EIRFNLMAI+ +RK +Y
Sbjct: 184 GPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIY 231


>sp|Q54N38|UCHL5_DICDI Ubiquitin carboxyl-terminal hydrolase isozyme
           L5 OS=Dictyostelium discoideum GN=uchl5 PE=3 SV=1
          Length = 343

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 25/46 (54%), Positives = 34/46 (73%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRK 171
           LG+C    PD+  WL+   P IQ+R+EKY + EIRFNLMA+I+NR+
Sbjct: 181 LGDC---TPDN--WLEIATPFIQKRMEKYSQGEIRFNLMAVIKNRQ 221


>sp|Q09444|UBH4_CAEEL Probable ubiquitin carboxyl-terminal hydrolase
           ubh-4 OS=Caenorhabditis elegans GN=ubh-4 PE=1 SV=2
          Length = 321

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 30/35 (85%)
 Frame = -1

Query: 272 EWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKE 168
           +W++ ++PVIQ+R++KY + EI FNLMA++ NRK+
Sbjct: 190 DWIEAIKPVIQQRMQKYSEGEITFNLMALVPNRKQ 224


>sp|Q9UUB6|UBLH2_SCHPO Ubiquitin carboxyl-terminal hydrolase 2
           OS=Schizosaccharomyces pombe GN=uch2 PE=1 SV=1
          Length = 300

 Score = 35.4 bits (80), Expect = 0.089
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 272 EWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRK 171
           E+ +K   VIQ RI  Y  +EIRFNLM I +++K
Sbjct: 190 EFAEKAVSVIQARIANYDPAEIRFNLMVICKDKK 223


>sp|Q99PU7|BAP1_MOUSE Ubiquitin carboxyl-terminal hydrolase BAP1
           OS=Mus musculus GN=Bap1 PE=1 SV=1
          Length = 728

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = -1

Query: 272 EWLKKVQPVIQERI------EKYFKSEIRFNLMAIIRNRKEMY 162
           EW  K + VI ERI      E Y   +IRFNLMA++ +R+  Y
Sbjct: 201 EWTDKARRVIMERIGLATAGEPYH--DIRFNLMAVVPDRRIKY 241


>sp|Q92560|BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1
           OS=Homo sapiens GN=BAP1 PE=1 SV=2
          Length = 729

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = -1

Query: 272 EWLKKVQPVIQERI------EKYFKSEIRFNLMAIIRNRKEMY 162
           EW  K + VI ERI      E Y   +IRFNLMA++ +R+  Y
Sbjct: 201 EWTDKARRVIMERIGLATAGEPYH--DIRFNLMAVVPDRRIKY 241


>sp|P51008|HEMZ_RHOS4 Coproporphyrinogen III oxidase, anaerobic 2
           OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
           NCIB 8253 / DSM 158) GN=hemZ PE=3 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 103 IPSCSKSCSFCLCRTSNSSVYISFRFLIIAIKLNLISL 216
           +P C + C FC CRT  +S     R    A+K  L  L
Sbjct: 57  VPFCRRLCWFCACRTQGTSSDAPVRAYAAALKSELALL 94
tr_hit_id A9RL89
Definition tr|A9RL89|A9RL89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 84.0
E-value 4.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918691|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_D08.
         (308 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RL89|A9RL89_PHYPA Predicted protein OS=Physcomitrella paten...    84   4e-15
tr|Q6K6Z5|Q6K6Z5_ORYSJ (RAP Annotation release2) Peptidase C12 O...    76   7e-13
tr|B7E2T1|B7E2T1_ORYSJ (RAP Annotation release2) Peptidase C12 O...    76   7e-13
tr|A2XB54|A2XB54_ORYSI Putative uncharacterized protein OS=Oryza...    76   7e-13
tr|A9NV68|A9NV68_PICSI Putative uncharacterized protein OS=Picea...    75   2e-12
tr|A7QSP7|A7QSP7_VITVI Chromosome chr4 scaffold_162, whole genom...    73   8e-12
tr|A5AU65|A5AU65_VITVI Putative uncharacterized protein OS=Vitis...    73   8e-12
tr|Q9FFF2|Q9FFF2_ARATH Ubiquitin C-terminal hydrolase-like prote...    72   2e-11
tr|Q9SHY9|Q9SHY9_ARATH F1E22.3 OS=Arabidopsis thaliana PE=4 SV=1       69   9e-11
tr|Q945M7|Q945M7_ARATH F5I14.29/F5I14.29 OS=Arabidopsis thaliana...    69   9e-11
tr|O04482|O04482_ARATH F5I14.18 protein (Putative uncharacterize...    69   9e-11
tr|Q6ETK2|Q6ETK2_ORYSJ Os02g0180100 protein OS=Oryza sativa subs...    60   7e-08
tr|A3A3T0|A3A3T0_ORYSJ Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|A2X1M0|A2X1M0_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|B4F8D8|B4F8D8_MAIZE Putative uncharacterized protein OS=Zea m...    59   9e-08
tr|Q4JHZ2|Q4JHZ2_ICTPU Ubiquitin C-terminal hydrolase (Fragment)...    55   2e-06
tr|A8XHZ7|A8XHZ7_CAEBR CBR-UBH-4 protein OS=Caenorhabditis brigg...    54   5e-06
tr|B6E460|B6E460_ICTPU Ubiquitin carboxy-terminal hydrolase L5 O...    52   1e-05
tr|B6PHI7|B6PHI7_BRAFL Putative uncharacterized protein OS=Branc...    52   2e-05
tr|Q5LJB2|Q5LJB2_HUMAN Ubiquitin carboxyl-terminal hydrolase L5 ...    52   2e-05
tr|Q5LJB0|Q5LJB0_HUMAN Ubiquitin carboxyl-terminal hydrolase L5 ...    52   2e-05
tr|Q5LJA3|Q5LJA3_HUMAN Ubiquitin carboxyl-terminal hydrolase L5 ...    52   2e-05
tr|B7Z9U9|B7Z9U9_HUMAN cDNA, FLJ78963, highly similar to Ubiquit...    52   2e-05
tr|B4DW59|B4DW59_HUMAN cDNA FLJ60356, highly similar to Ubiquiti...    52   2e-05
tr|B2RB07|B2RB07_HUMAN cDNA, FLJ95243, highly similar to Homo sa...    52   2e-05
tr|Q6NWL6|Q6NWL6_DANRE Ubiquitin carboxyl-terminal hydrolase L5 ...    51   3e-05
tr|Q4S6N9|Q4S6N9_TETNG Chromosome undetermined SCAF14724, whole ...    51   3e-05
tr|B5X5H3|B5X5H3_SALSA Ubiquitin carboxyl-terminal hydrolase iso...    51   3e-05
tr|B5X2A6|B5X2A6_SALSA Ubiquitin carboxyl-terminal hydrolase iso...    51   3e-05
tr|Q5HZY3|Q5HZY3_RAT Ubiquitin carboxyl-terminal esterase L5 OS=...    51   3e-05

>tr|A9RL89|A9RL89_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_176083 PE=4 SV=1
          Length = 323

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 38/49 (77%), Positives = 44/49 (89%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMY 162
           LGECG   PDSM+WL+ VQPVIQERIEKY KSEIRFNLMA+I+NRK++Y
Sbjct: 181 LGECGGEGPDSMDWLQMVQPVIQERIEKYSKSEIRFNLMAVIKNRKDIY 229


>tr|Q6K6Z5|Q6K6Z5_ORYSJ (RAP Annotation release2) Peptidase C12
           OS=Oryza sativa subsp. japonica GN=P0474F11.34-1 PE=2
           SV=1
          Length = 331

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 35/50 (70%), Positives = 45/50 (90%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG+C SG PD ++WL+ VQPVIQ+RIE+Y +SEIRFNLMAII+NRK++YT
Sbjct: 181 LGQC-SGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAIIKNRKDVYT 229


>tr|B7E2T1|B7E2T1_ORYSJ (RAP Annotation release2) Peptidase C12
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 278

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 35/50 (70%), Positives = 45/50 (90%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG+C SG PD ++WL+ VQPVIQ+RIE+Y +SEIRFNLMAII+NRK++YT
Sbjct: 128 LGQC-SGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAIIKNRKDVYT 176


>tr|A2XB54|A2XB54_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09494 PE=4 SV=1
          Length = 331

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 35/50 (70%), Positives = 45/50 (90%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG+C SG PD ++WL+ VQPVIQ+RIE+Y +SEIRFNLMAII+NRK++YT
Sbjct: 181 LGQC-SGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAIIKNRKDVYT 229


>tr|A9NV68|A9NV68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 340

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
 Frame = -1

Query: 293 SGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYTXXXXXXXXXXXXXXX 114
           +G  +S+EWLK VQPVIQERIEKY KSEIRFNLMAII+NR ++Y                
Sbjct: 185 NGSRESLEWLKLVQPVIQERIEKYSKSEIRFNLMAIIKNRLDIYKAEQRDLENRKKQIQQ 244

Query: 113 XLGISGSSKHDDRIDVDYG----PASVGQIKLALGEVETKI 3
            L  S     DDR+DVD G     ASV  +  +L E++ ++
Sbjct: 245 QLDAS-KCNGDDRMDVDNGSGRQSASVEGLNRSLVEIDFEL 284


>tr|A7QSP7|A7QSP7_VITVI Chromosome chr4 scaffold_162, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00005967001
           PE=4 SV=1
          Length = 321

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 33/50 (66%), Positives = 44/50 (88%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG+C  G+ D ++W++ VQPVIQERIE+Y +SEIRFNLMAII+NRK++YT
Sbjct: 181 LGQCPGGQGD-LDWVRMVQPVIQERIERYSRSEIRFNLMAIIKNRKDIYT 229


>tr|A5AU65|A5AU65_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027729 PE=4 SV=1
          Length = 334

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 33/50 (66%), Positives = 44/50 (88%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG+C  G+ D ++W++ VQPVIQERIE+Y +SEIRFNLMAII+NRK++YT
Sbjct: 181 LGQCPGGQGD-LDWVRMVQPVIQERIERYSRSEIRFNLMAIIKNRKDIYT 229


>tr|Q9FFF2|Q9FFF2_ARATH Ubiquitin C-terminal hydrolase-like protein
           (At5g16310) OS=Arabidopsis thaliana GN=At5g16310/MQK4_3
           PE=2 SV=1
          Length = 334

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 35/102 (34%), Positives = 60/102 (58%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYTXXXXXXXXXX 129
           LG+C  GEP+ +EWL+ VQPV+QE+I++Y ++EIRF+L+A+++NRKEMY           
Sbjct: 187 LGQC-LGEPEGIEWLRMVQPVVQEQIDRYSQNEIRFSLLAVVKNRKEMYVAELKEYQRKR 245

Query: 128 XXXXXXLGISGSSKHDDRIDVDYGPASVGQIKLALGEVETKI 3
                 LG   + K+ ++   +     + ++ + +  V  KI
Sbjct: 246 ERVLQQLGALQADKYAEKSSYEALDRELSEVNIGIETVSQKI 287


>tr|Q9SHY9|Q9SHY9_ARATH F1E22.3 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 361

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 32/50 (64%), Positives = 42/50 (84%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG C  G+   +EWL+ VQPVIQERIE+Y +SEIRFNL+A+I+NRK++YT
Sbjct: 212 LGPC-PGDQTGIEWLQMVQPVIQERIERYSQSEIRFNLLAVIKNRKDIYT 260


>tr|Q945M7|Q945M7_ARATH F5I14.29/F5I14.29 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 330

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 32/50 (64%), Positives = 42/50 (84%)
 Frame = -1

Query: 308 LGECGSGEPDSMEWLKKVQPVIQERIEKYFKSEIRFNLMAIIRNRKEMYT 159
           LG C  G+   +EWL+ VQPVIQERIE+Y +SEIRFNL+A+I+NRK++YT
Sbjct: 181 LGPC-PGDQTGIEWLQMVQPVIQERIERYSQSEIRFNLLAVIKNRKDIYT 229