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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918696
Clone id YMU001_000116_E01
Library
Length 207
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGTGTCTGGTGCAGCTGGGCTAGCCAGAGATAAGCTACTTGAAAGGCAAGAAAAGTTGC
AGGCATTGGGTAAGCGCACTGAGGAGATGCAGGAAGGAGCACAAAATTTTGCCTCAATGG
CTGCAGAACTTGCCAAGACCATGGAGGGGCGGAAATGGTGGCAGTTATAATCCTAAAAGC
TTCATTACTGGTATATACAACCCTATA
■■Homology search results ■■ -
sp_hit_id P18489
Definition sp|P18489|SYB_DROME Synaptobrevin OS=Drosophila melanogaster
Align length 44
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918696|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_E01.
         (207 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18489|SYB_DROME Synaptobrevin OS=Drosophila melanogaster GN=...    40   0.003
sp|Q62442|VAMP1_MOUSE Vesicle-associated membrane protein 1 OS=M...    39   0.006
sp|P23763|VAMP1_HUMAN Vesicle-associated membrane protein 1 OS=H...    39   0.006
sp|Q0V7N0|VAMP1_BOVIN Vesicle-associated membrane protein 1 OS=B...    39   0.006
sp|P13701|SYB_TORCA Synaptobrevin OS=Torpedo californica PE=2 SV=1     39   0.006
sp|O02495|SYB1_CAEEL Synaptobrevin-1 OS=Caenorhabditis elegans G...    39   0.011
sp|Q60WU2|SYB1_CAEBR Synaptobrevin-1 OS=Caenorhabditis briggsae ...    39   0.011
sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 OS=Rat...    38   0.014
sp|P63024|VAMP3_MOUSE Vesicle-associated membrane protein 3 OS=M...    38   0.014
sp|Q4R8T0|VAMP3_MACFA Vesicle-associated membrane protein 3 OS=M...    38   0.014
sp|Q15836|VAMP3_HUMAN Vesicle-associated membrane protein 3 OS=H...    38   0.014
sp|Q2KJD2|VAMP3_BOVIN Vesicle-associated membrane protein 3 OS=B...    38   0.014
sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 OS=Rat...    38   0.014
sp|P63044|VAMP2_MOUSE Vesicle-associated membrane protein 2 OS=M...    38   0.014
sp|Q9N0Y0|VAMP2_MACMU Vesicle-associated membrane protein 2 OS=M...    38   0.014
sp|P63027|VAMP2_HUMAN Vesicle-associated membrane protein 2 OS=H...    38   0.014
sp|P63026|VAMP2_BOVIN Vesicle-associated membrane protein 2 OS=B...    38   0.014
sp|Q63666|VAMP1_RAT Vesicle-associated membrane protein 1 OS=Rat...    38   0.014
sp|P47193|VAMP2_XENLA Vesicle-associated membrane protein 2 OS=X...    37   0.031
sp|P47194|SYB_LOLPE Synaptobrevin OS=Loligo pealeii PE=1 SV=1          35   0.15 
sp|Q9HR92|HTR6_HALSA Halobacterial transducer protein 6 OS=Halob...    34   0.20 
sp|Q27236|SYBL_SCHMA Synaptobrevin-like protein OS=Schistosoma m...    33   0.34 
sp|Q6TMJ9|SYBA_DICDI Synaptobrevin-A OS=Dictyostelium discoideum...    33   0.34 
sp|Q12255|NYV1_YEAST Vacuolar v-SNARE NYV1 OS=Saccharomyces cere...    33   0.44 
sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS...    32   1.3  
sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS...    30   2.9  
sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS...    30   2.9  
sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS...    30   2.9  
sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane prote...    29   6.4  
sp|P01267|THYG_BOVIN Thyroglobulin OS=Bos taurus GN=TG PE=1 SV=1       29   8.3  

>sp|P18489|SYB_DROME Synaptobrevin OS=Drosophila melanogaster GN=Syb
           PE=2 SV=3
          Length = 152

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWW 161
           +K+LER +KL  LG+R +++++GA  F   A +L +    ++WW
Sbjct: 67  EKVLERDQKLSELGERADQLEQGASQFEQQAGKLKR----KQWW 106


>sp|Q62442|VAMP1_MOUSE Vesicle-associated membrane protein 1 OS=Mus
           musculus GN=Vamp1 PE=1 SV=1
          Length = 118

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F S AA+L +    + WW+
Sbjct: 53  DKVLERDQKLSELDDRADALQAGASQFESSAAKLKR----KYWWK 93


>sp|P23763|VAMP1_HUMAN Vesicle-associated membrane protein 1 OS=Homo
           sapiens GN=VAMP1 PE=1 SV=1
          Length = 118

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F S AA+L +    + WW+
Sbjct: 53  DKVLERDQKLSELDDRADALQAGASQFESSAAKLKR----KYWWK 93


>sp|Q0V7N0|VAMP1_BOVIN Vesicle-associated membrane protein 1 OS=Bos
           taurus GN=VAMP1 PE=3 SV=2
          Length = 118

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F S AA+L +    + WW+
Sbjct: 53  DKVLERDQKLSELDDRADALQAGASQFESSAAKLKR----KYWWK 93


>sp|P13701|SYB_TORCA Synaptobrevin OS=Torpedo californica PE=2 SV=1
          Length = 120

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F S AA+L +    + WW+
Sbjct: 55  DKVLERDQKLSELDDRADALQAGASQFESSAAKLKR----KYWWK 95


>sp|O02495|SYB1_CAEEL Synaptobrevin-1 OS=Caenorhabditis elegans
           GN=snb-1 PE=1 SV=1
          Length = 109

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           +K+LER +KL  L  R + +QEGA  F   AA    T++ + WW+
Sbjct: 43  EKVLERDQKLSQLDDRADALQEGASQFEKSAA----TLKRKYWWK 83


>sp|Q60WU2|SYB1_CAEBR Synaptobrevin-1 OS=Caenorhabditis briggsae
           GN=snb-1 PE=3 SV=1
          Length = 108

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           +K+LER +KL  L  R + +QEGA  F   AA    T++ + WW+
Sbjct: 42  EKVLERDQKLSQLDDRADALQEGASQFEKSAA----TLKRKYWWK 82


>sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 OS=Rattus
           norvegicus GN=Vamp3 PE=2 SV=1
          Length = 103

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F + AA+L +    + WW+
Sbjct: 38  DKVLERDQKLSELDDRADALQAGASQFETSAAKLKR----KYWWK 78


>sp|P63024|VAMP3_MOUSE Vesicle-associated membrane protein 3 OS=Mus
           musculus GN=Vamp3 PE=2 SV=1
          Length = 103

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F + AA+L +    + WW+
Sbjct: 38  DKVLERDQKLSELDDRADALQAGASQFETSAAKLKR----KYWWK 78


>sp|Q4R8T0|VAMP3_MACFA Vesicle-associated membrane protein 3
           OS=Macaca fascicularis GN=VAMP3 PE=3 SV=1
          Length = 100

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 30  DKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
           DK+LER +KL  L  R + +Q GA  F + AA+L +    + WW+
Sbjct: 34  DKVLERDQKLSELDDRADALQAGASQFETSAAKLKR----KYWWK 74
tr_hit_id A7QHQ0
Definition tr|A7QHQ0|A7QHQ0_VITVI Chromosome chr8 scaffold_99, whole genome shotgun sequence OS=Vitis vinifera
Align length 54
Score (bit) 75.9
E-value 9.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918696|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_E01.
         (207 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QHQ0|A7QHQ0_VITVI Chromosome chr8 scaffold_99, whole genome...    76   9e-13
tr|A5BUK8|A5BUK8_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|Q84NP4|Q84NP4_ORYSJ Putative uncharacterized protein P0034A04...    73   8e-12
tr|Q0D3C7|Q0D3C7_ORYSJ Os07g0693700 protein OS=Oryza sativa subs...    73   8e-12
tr|B8B6B1|B8B6B1_ORYSI Putative uncharacterized protein OS=Oryza...    73   8e-12
tr|A3BNQ4|A3BNQ4_ORYSJ Putative uncharacterized protein OS=Oryza...    73   8e-12
tr|A9RPV0|A9RPV0_PHYPA Tomosyn-like protein OS=Physcomitrella pa...    71   2e-11
tr|Q9FFF8|Q9FFF8_ARATH Arabidopsis thaliana genomic DNA, chromos...    68   3e-10
tr|A8JGX3|A8JGX3_CHLRE R-SNARE protein, tomsyn-like family OS=Ch...    49   1e-04
tr|Q7PRW8|Q7PRW8_ANOGA AGAP000009-PA OS=Anopheles gambiae GN=AGA...    44   0.005
tr|B6PNH0|B6PNH0_BRAFL Putative uncharacterized protein OS=Branc...    42   0.012
tr|Q0WQ40|Q0WQ40_ARATH Putative uncharacterized protein At4g3556...    42   0.015
tr|O81789|O81789_ARATH Putative uncharacterized protein AT4g3556...    42   0.015
tr|Q174B3|Q174B3_AEDAE Tomosyn (Fragment) OS=Aedes aegypti GN=AA...    41   0.026
tr|Q6XI73|Q6XI73_DROYA Similar to Drosophila melanogaster Syb (F...    40   0.044
tr|Q290I4|Q290I4_DROPS GA11480 OS=Drosophila pseudoobscura pseud...    40   0.044
tr|B7YZD6|B7YZD6_DROME Synaptobrevin, isoform D OS=Drosophila me...    40   0.044
tr|B7YZD5|B7YZD5_DROME Synaptobrevin, isoform C OS=Drosophila me...    40   0.044
tr|B4QIA6|B4QIA6_DROSI GD25998 OS=Drosophila simulans GN=GD25998...    40   0.044
tr|B4NX70|B4NX70_DROYA Syb OS=Drosophila yakuba GN=Dyak\Syb PE=4...    40   0.044
tr|B4N687|B4N687_DROWI GK18016 OS=Drosophila willistoni GN=GK180...    40   0.044
tr|B4LKC4|B4LKC4_DROVI GJ20156 OS=Drosophila virilis GN=GJ20156 ...    40   0.044
tr|B4KN65|B4KN65_DROMO GI20208 OS=Drosophila mojavensis GN=GI202...    40   0.044
tr|B4J6W4|B4J6W4_DROGR GH20114 OS=Drosophila grimshawi GN=GH2011...    40   0.044
tr|B4HME9|B4HME9_DROSE GM20541 OS=Drosophila sechellia GN=GM2054...    40   0.044
tr|B4GC00|B4GC00_DROPE GL10482 OS=Drosophila persimilis GN=GL104...    40   0.044
tr|B3N6G5|B3N6G5_DROER GG25222 OS=Drosophila erecta GN=GG25222 P...    40   0.044
tr|B3MBG1|B3MBG1_DROAN GF12131 OS=Drosophila ananassae GN=GF1213...    40   0.044
tr|B0XL59|B0XL59_CULQU Tomosyn OS=Culex quinquefasciatus GN=Cpip...    40   0.044
tr|Q8T897|Q8T897_HALRO Similar to vesicle associated menbrane pr...    40   0.075

>tr|A7QHQ0|A7QHQ0_VITVI Chromosome chr8 scaffold_99, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00038877001
            PE=4 SV=1
          Length = 1109

 Score = 75.9 bits (185), Expect = 9e-13
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            S  A  ARDKL+ERQEKL+ + KRTEE+Q GA++FAS+A EL K MEGRKW+Q+
Sbjct: 1056 SSVAAHARDKLVERQEKLERISKRTEELQSGAEDFASLANELVKAMEGRKWYQI 1109


>tr|A5BUK8|A5BUK8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036228 PE=4 SV=1
          Length = 812

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 34/52 (65%), Positives = 44/52 (84%)
 Frame = +3

Query: 6   SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWW 161
           S AA  ARD+L+ERQEKL+ + +R+EE++ GA+NFASMA+ELAK ME RKWW
Sbjct: 759 STAAAHARDRLVERQEKLERISQRSEELRSGAENFASMASELAKKMENRKWW 810


>tr|Q84NP4|Q84NP4_ORYSJ Putative uncharacterized protein P0034A04.133
            OS=Oryza sativa subsp. japonica GN=P0034A04.133 PE=4 SV=1
          Length = 1074

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 31/54 (57%), Positives = 45/54 (83%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            + AA  A+DKL++RQEKL+ + +RT E++ GA+NFAS+A ELAK+ME +KWW+L
Sbjct: 1021 AAAAAHAKDKLMQRQEKLERISQRTAELESGAENFASLAQELAKSMENKKWWKL 1074


>tr|Q0D3C7|Q0D3C7_ORYSJ Os07g0693700 protein OS=Oryza sativa subsp.
            japonica GN=Os07g0693700 PE=4 SV=1
          Length = 1101

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 31/54 (57%), Positives = 45/54 (83%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            + AA  A+DKL++RQEKL+ + +RT E++ GA+NFAS+A ELAK+ME +KWW+L
Sbjct: 1048 AAAAAHAKDKLMQRQEKLERISQRTAELESGAENFASLAQELAKSMENKKWWKL 1101


>tr|B8B6B1|B8B6B1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_27444 PE=4 SV=1
          Length = 1101

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 31/54 (57%), Positives = 45/54 (83%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            + AA  A+DKL++RQEKL+ + +RT E++ GA+NFAS+A ELAK+ME +KWW+L
Sbjct: 1048 AAAAAHAKDKLMQRQEKLERISQRTAELESGAENFASLAQELAKSMENKKWWKL 1101


>tr|A3BNQ4|A3BNQ4_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_024676 PE=4 SV=1
          Length = 1059

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 31/54 (57%), Positives = 45/54 (83%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            + AA  A+DKL++RQEKL+ + +RT E++ GA+NFAS+A ELAK+ME +KWW+L
Sbjct: 1006 AAAAAHAKDKLMQRQEKLERISQRTAELESGAENFASLAQELAKSMENKKWWKL 1059


>tr|A9RPV0|A9RPV0_PHYPA Tomosyn-like protein OS=Physcomitrella patens
            subsp. patens GN=TYN11 PE=4 SV=1
          Length = 1309

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQ 164
            + AA +ARDKL+ER EKLQ+L  +TEEM  GA+NFAS+A +LAK  E RKWW+
Sbjct: 1256 TNAAAMARDKLMERGEKLQSLNDKTEEMTLGAENFASLAEQLAKKYEKRKWWE 1308


>tr|Q9FFF8|Q9FFF8_ARATH Arabidopsis thaliana genomic DNA, chromosome
            5, P1 clone:MOP10 OS=Arabidopsis thaliana GN=At5g05570
            PE=4 SV=1
          Length = 1124

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 32/54 (59%), Positives = 40/54 (74%)
 Frame = +3

Query: 6    SGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            S  A  A+DKL ER EKL+ + +RT E+Q+ A+NFASMA ELAK ME RKWW +
Sbjct: 1071 SAIASQAKDKLHERGEKLERISQRTAELQDNAENFASMAHELAKQMEKRKWWNI 1124


>tr|A8JGX3|A8JGX3_CHLRE R-SNARE protein, tomsyn-like family
            OS=Chlamydomonas reinhardtii GN=TML1 PE=4 SV=1
          Length = 1204

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = +3

Query: 27   RDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            R+KL ER EKL  L  +  +++  AQ FA MA +LA+    +KWWQL
Sbjct: 1158 RNKLAERGEKLGRLNDKAADLEASAQGFADMARQLAERERNKKWWQL 1204


>tr|Q7PRW8|Q7PRW8_ANOGA AGAP000009-PA OS=Anopheles gambiae
            GN=AGAP000009 PE=4 SV=4
          Length = 1479

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 23/55 (41%), Positives = 31/55 (56%)
 Frame = +3

Query: 3    VSGAAGLARDKLLERQEKLQALGKRTEEMQEGAQNFASMAAELAKTMEGRKWWQL 167
            V+   G A   +LER +KL  L +RTE M   AQ F+S A  L    + +KW+QL
Sbjct: 1425 VTSEIGKAHQLMLERGDKLSQLEERTERMANEAQQFSSSAHLLMNKYKDKKWYQL 1479