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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918697
Clone id YMU001_000116_E02
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCAAGCAGCCAACACCACTTCAGCGCAGAAAGAAACCATAACACCAACACATGTAACCA
TTTACAAGCACCCACTTGCAAACCCTTGAAGGAATATGGAGACAACAAGCTACCTATTGC
CAGGAAAATAGCTACATTTTTCAAGCATGAGAACCTCCCTGCAGCAGCTTCATAGCTAAA
CCAGCCAGCTTGGCACAATATTCGATTCTTTTAGAAACACATGACTGCCATTGCAAACAT
TCATTGCATCATTACCAACAGGAGGATTCCTGAAAACTTTCCTTTGAGACTTTCTCTTCC
CATAAGGAGCATGGCCAAACTCCAGAGGGACTCAAGACGAAGGCTTCCTGCATACAAATA
CAAAGAGTGAATCTGGATTCTCCAAAACAAAATTGTTGGCATAAGTACCATCTGCATTAA
GCTGTACAGGCTCTCTATAAGTTCTTAATCGGTCGTCTGGATCCATGTCTGCATCAGGTT
GTGGTATGATGAACAAAGTCACATGCCAACCAAAAGCTTTTGTGCTAAGGAGTGGAAATC
TAGATTCAGGATTTCCAGTTGTG
■■Homology search results ■■ -
sp_hit_id P48790
Definition sp|P48790|XYLA_CLOSR Xylosidase/arabinosidase OS=Clostridium stercorarium
Align length 79
Score (bit) 33.5
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918697|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_E02.
         (563 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48790|XYLA_CLOSR Xylosidase/arabinosidase OS=Clostridium ste...    33   0.74 
sp|Q45606|YYCP_BACSU Uncharacterized protein yycP OS=Bacillus su...    31   4.8  
sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 ...    30   6.3  
sp|P38085|VAL1_YEAST Valine/tyrosine/tryptophan amino-acid perme...    30   8.2  

>sp|P48790|XYLA_CLOSR Xylosidase/arabinosidase OS=Clostridium
           stercorarium GN=xylA PE=1 SV=1
          Length = 473

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -2

Query: 508 WHVTLFIIPQPDADMDPDDRLRTYREPVQLNADGTYANNFVLENPDSLFVFVCRKPSS*V 329
           W     I  + D  ++PD R+  Y   V L  DG Y   +VL+    + V VC  P+   
Sbjct: 60  WRYEGVIYRKTDDPLNPDGRMCLYAPDVTLGPDGRYYLYYVLDKVPVVSVAVCDTPAGKY 119

Query: 328 PLEFGHAPY--GKRKSQRK 278
              +G+  Y  G R  +R+
Sbjct: 120 EF-YGYVRYADGTRLGERE 137


>sp|Q45606|YYCP_BACSU Uncharacterized protein yycP OS=Bacillus
           subtilis GN=yycP PE=4 SV=1
          Length = 387

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 183 WFSYEAAAGRFSCLKNVAIFLAIGSLLSPYSFKGLQVGACK 61
           +FS  A    F   KN A+F++    LS +  KGL++G+ K
Sbjct: 50  YFSSSADQDAFGGGKNYALFISHDGTLSSFQMKGLELGSAK 90


>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4
           OS=Mus musculus GN=Morc4 PE=2 SV=2
          Length = 928

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
 Frame = -1

Query: 302 WEEKVSKESFQ--------ESSCW**CNECLQWQ 225
           W+EK+S+E+F+            W  C+ECL+W+
Sbjct: 400 WKEKISQENFEPLPTSRRIPDQTWVQCDECLKWR 433


>sp|P38085|VAL1_YEAST Valine/tyrosine/tryptophan amino-acid permease
           OS=Saccharomyces cerevisiae GN=VAP1 PE=1 SV=1
          Length = 619

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 166 SFIAKPASLAQYSILLETHDCHCKHSLHHYQQEDS*KLSFETFSSHKE-HGQTPEGLKTK 342
           SFIAK AS AQYS           HSLH     +  K  F       E  GQT E  +T 
Sbjct: 6   SFIAKEASPAQYS-----------HSLHERTHSEKQKRDFTITEKQDEVSGQTAEPRRTD 54

Query: 343 ASCI 354
           +  I
Sbjct: 55  SKSI 58
tr_hit_id Q9LZX3
Definition tr|Q9LZX3|Q9LZX3_ARATH Putative uncharacterized protein T4C21_320 OS=Arabidopsis thaliana
Align length 75
Score (bit) 57.0
E-value 7.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918697|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_E02.
         (563 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LZX3|Q9LZX3_ARATH Putative uncharacterized protein T4C21_32...    57   7e-07
tr|Q8RXT8|Q8RXT8_ARATH Putative uncharacterized protein At3g6091...    57   7e-07
tr|A7Q206|A7Q206_VITVI Chromosome chr13 scaffold_45, whole genom...    56   1e-06
tr|A9TRY3|A9TRY3_PHYPA Predicted protein OS=Physcomitrella paten...    53   1e-05
tr|A3BN01|A3BN01_ORYSJ Putative uncharacterized protein OS=Oryza...    51   5e-05
tr|B6U1V3|B6U1V3_MAIZE Methylase OS=Zea mays PE=2 SV=1                 45   0.002
tr|A9RCR1|A9RCR1_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.008
tr|Q60ES1|Q60ES1_ORYSJ Putative uncharacterized protein OJ1764_D...    43   0.014
tr|Q0DIG0|Q0DIG0_ORYSJ Os05g0392200 protein (Fragment) OS=Oryza ...    43   0.014
tr|B8AXZ9|B8AXZ9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.018
tr|Q9LUT4|Q9LUT4_ARATH Gb|AAF34859.1 OS=Arabidopsis thaliana PE=...    36   1.3  
tr|Q949P5|Q949P5_ARATH Putative uncharacterized protein At3g1736...    36   1.3  
tr|A8IN22|A8IN22_CHLRE SAM-dependent methyltransferase OS=Chlamy...    36   1.3  
tr|A3B3Q3|A3B3Q3_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|A6LG64|A6LG64_PARD8 Deoxyribose-phosphate aldolase OS=Parabac...    35   2.2  
tr|B7FIQ1|B7FIQ1_MEDTR Putative uncharacterized protein OS=Medic...    34   6.3  
tr|Q9PYZ4|Q9PYZ4_GVXN ORF49 OS=Xestia c-nigrum granulosis virus ...    33   8.2  
tr|Q1ZMY6|Q1ZMY6_9VIBR Bacteriorhodopsin OS=Vibrio angustum S14 ...    33   8.2  
tr|A0ZKS4|A0ZKS4_NODSP Glycosyl transferase, family 39 OS=Nodula...    33   8.2  

>tr|Q9LZX3|Q9LZX3_ARATH Putative uncharacterized protein T4C21_320
           OS=Arabidopsis thaliana GN=T4C21_320 PE=4 SV=1
          Length = 248

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDP--DDRLRTYREPVQLNADGTYANNF 389
           T G+P+ R P L+  A+ W ++L+IIP+P            ++  E + + ++G   +++
Sbjct: 155 TYGDPKVRMPHLTRSAYNWKISLYIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDY 214

Query: 388 VLENPDSLFVFVCRK 344
           VLE+PDS F+++C+K
Sbjct: 215 VLEDPDSHFIYICKK 229


>tr|Q8RXT8|Q8RXT8_ARATH Putative uncharacterized protein At3g60910
           OS=Arabidopsis thaliana GN=At3g60910 PE=2 SV=1
          Length = 252

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDP--DDRLRTYREPVQLNADGTYANNF 389
           T G+P+ R P L+  A+ W ++L+IIP+P            ++  E + + ++G   +++
Sbjct: 159 TYGDPKVRMPHLTRSAYNWKISLYIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDY 218

Query: 388 VLENPDSLFVFVCRK 344
           VLE+PDS F+++C+K
Sbjct: 219 VLEDPDSHFIYICKK 233


>tr|A7Q206|A7Q206_VITVI Chromosome chr13 scaffold_45, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028686001
           PE=4 SV=1
          Length = 253

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQP--DADMDPDDRLRTYREPVQLNADGTYANNF 389
           T G+P  R P L    + W V L++IP+P            ++Y EPV     G     F
Sbjct: 159 TYGDPTVRMPHLGRPVYNWKVVLYVIPRPGFQKPAGSTSSAKSYLEPVPTTEKGLLLPGF 218

Query: 388 VLENPDSLFVFVCRKPSS*VPLEFGHAP 305
           VLE+PDS ++++C+K       E G+ P
Sbjct: 219 VLEDPDSHYIYICKKMDE--TAELGNIP 244


>tr|A9TRY3|A9TRY3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_149610 PE=4 SV=1
          Length = 236

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 26/73 (35%), Positives = 38/73 (52%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDPDDRLRTYREPVQLNADGTYANNFVL 383
           T G+P  R P L ++   W + L ++P+P +    +   R   EPV L  D T    F L
Sbjct: 156 TYGDPRVRIPHLKSEEAPWEIKLHVLPRPGSKRAHEGTSRPITEPVSLGEDLTLGPTFKL 215

Query: 382 ENPDSLFVFVCRK 344
           E+PD  +V+VC K
Sbjct: 216 EDPDLHYVYVCIK 228


>tr|A3BN01|A3BN01_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024423 PE=4 SV=1
          Length = 241

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 24/73 (32%), Positives = 39/73 (53%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDPDDRLRTYREPVQLNADGTYANNFVL 383
           T G+P  R P L+     W + L+I+P+P          R+  +PV +   G   + FV 
Sbjct: 150 TYGDPSVRVPHLNQSGCNWKIVLYILPRPGFK---GKTKRSVLDPVPMTESGVLPDGFVP 206

Query: 382 ENPDSLFVFVCRK 344
           E+PDS +++VC+K
Sbjct: 207 EDPDSHYIYVCKK 219


>tr|B6U1V3|B6U1V3_MAIZE Methylase OS=Zea mays PE=2 SV=1
          Length = 258

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDPDDRL-RTYREPVQLNADGTYANNFV 386
           T G P+ R PLL+     W + L+I+P     +           E V L   G    ++V
Sbjct: 165 TYGAPKERVPLLNQSGCSWSIALYIMPTAGYQLRMSKGAPHLIMEEVTLTEGGQLPPDYV 224

Query: 385 LENPDSLFVFVCRK 344
           L++PDS F++VC K
Sbjct: 225 LKDPDSHFIYVCEK 238


>tr|A9RCR1|A9RCR1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111316 PE=4 SV=1
          Length = 257

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWH-VTLFIIPQPDADMDPDDRLRTYREPVQLNADGTYANNFV 386
           T G+P +R P L T    W  + + + P+P +    +   R   EPV +  D T    F 
Sbjct: 179 TYGDPRTRMPWLKTPLTPWKSIIVHVFPRPGSPKALNPGPRPILEPVYMLPDLTLGPQFN 238

Query: 385 LENPDSLFVFVCRK 344
           L++PD  +++VC+K
Sbjct: 239 LDDPDWHYIYVCKK 252


>tr|Q60ES1|Q60ES1_ORYSJ Putative uncharacterized protein
           OJ1764_D01.11 OS=Oryza sativa subsp. japonica
           GN=OJ1764_D01.11 PE=4 SV=1
          Length = 168

 Score = 42.7 bits (99), Expect = 0.014
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDPDDRL---RTYREPVQLNADGTYANN 392
           T G P+ R  LL        + L+I+P P   +     +   +   E V L  DG    +
Sbjct: 72  TYGCPKERVQLLYQSGSHKKIELYIMPTPGYQLKWSKGVSLAQPIMEEVSLTVDGQLPPD 131

Query: 391 FVLENPDSLFVFVCRKPSS 335
           +VL++P+S F+++C+KP +
Sbjct: 132 YVLKDPESHFIYICKKPDA 150


>tr|Q0DIG0|Q0DIG0_ORYSJ Os05g0392200 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os05g0392200 PE=4 SV=1
          Length = 171

 Score = 42.7 bits (99), Expect = 0.014
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDPDDRL---RTYREPVQLNADGTYANN 392
           T G P+ R  LL        + L+I+P P   +     +   +   E V L  DG    +
Sbjct: 75  TYGCPKERVQLLYQSGSHKKIELYIMPTPGYQLKWSKGVSLAQPIMEEVSLTVDGQLPPD 134

Query: 391 FVLENPDSLFVFVCRKPSS 335
           +VL++P+S F+++C+KP +
Sbjct: 135 YVLKDPESHFIYICKKPDA 153


>tr|B8AXZ9|B8AXZ9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19841 PE=4 SV=1
          Length = 265

 Score = 42.4 bits (98), Expect = 0.018
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -2

Query: 562 TTGNPESRFPLLSTKAFGWHVTLFIIPQPDADMDPDDRL---RTYREPVQLNADGTYANN 392
           T G P+ R  LL        + L+I+P P   +     +   +   E V L  DG    +
Sbjct: 169 TYGCPKERVQLLYQAGSHKKIELYIMPTPGYQLKWSKGVSLAQPIMEEVSLTVDGQLPPD 228

Query: 391 FVLENPDSLFVFVCRKPSS 335
           +VL++P+S F+++C+KP +
Sbjct: 229 YVLKDPESHFIYICKKPDA 247