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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918700
Clone id YMU001_000116_E05
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCTAGCCAAGGTTTTTGTGGTCAAAACTAATAATCTGGGAGCTTTAACTAAAGACAGGT
TGATACAATATGGAAGCTTGTAGCCCCGGATCATCAATTACACTGTTTATCTGGAAAGTA
GGAGTTACAATATTCCCGATTCATCAAAATAATAAGTGTTTTTACAATGAAAGCTCCAAA
AAATGTTATCCAAGTTAGCTTGCTGCTAACATTCCCCCCTCCTCAACTGTGTCATCCCTT
GACACAGACTCATGGACTAAAGTAGTCTTCAGGTTGACGGCTGGCGAGGCGGTCTTTAAG
CGCATGTAGTGCTTTCTCATACATTGAGTCTTCTCTCTTGTCAAGAACTTGCAAGAAATG
CATTGTGACTCTGTTTTTGAGCTCAATGGCTGAATATGTTGGAGCTATATATGGCTCACT
CTACTGAACTTGGTGTCACCTATATATTTGTATCTTGTCCTCAATATGAATCAGTCTTTG
GGAGTGTATATGGTGTGTCTCTTGTCTCGTCTCTCTCTCTCT
■■Homology search results ■■ -
sp_hit_id Q71RC2
Definition sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens
Align length 58
Score (bit) 29.6
E-value 9.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918700|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_E05.
         (522 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LA...    30   9.0  
sp|A8F1L7|GPDA_RICM5 Glycerol-3-phosphate dehydrogenase [NAD(P)+...    30   9.1  

>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4
           PE=1 SV=3
          Length = 724

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -2

Query: 371 ESQCISCKFLTREKTQCMRKHYMRLKTASPA----VNLKTTLVHESVSRDDTVEEGGM 210
           E   ISC     E+T+C     + + T+SP       L TT   + +  D +V++ G+
Sbjct: 518 EELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGL 575


>sp|A8F1L7|GPDA_RICM5 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Rickettsia massiliae (strain Mtu5) GN=gpsA PE=3 SV=1
          Length = 330

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 199 LAANIPPSSTVSSLDTDSWTKVVFRLTA 282
           LA N+P S++++SLD D   K+ + L+A
Sbjct: 144 LAKNLPASASIASLDIDIANKIAYNLSA 171
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918700|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_E05.
         (522 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******