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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918712
Clone id YMU001_000116_F06
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCACACAATACAGAGGGCCACATTCAAACTATGGACCCATTGCAATAAATTGATTTGTC
AACCTTAGCATAAGGAAATATAGAGCTATACAACTAGTAAGCCCTGTTGAAGGCAAGCAG
TACCTAATAACAGGAGGCACTGCCTCTGCCCTCAGAAAAAATATATGTGAAACTAACTAG
CACTCTTCAAGAGATTATCGTATGTCAATCACACTAGTACCCTCTGATCCATTGTTGAAG
GGTACATAAACTGAAACAACATCATAAACTCCTGGTCAAAGACCCCCTACTTATACCTTT
ACAATGCTAGTGGTTTACTTTACAAAGCAATCGTGCACCATAGACCCGTCCAGGGAGATC
AAGGGCTTCAAGTTCTGTGCTGCACAACCTCACAAACCATCCTACCACGCTTTTGTTGGC
TTCACAGAACCAGCAGAGTCTCTTCAATCAGATCATCTAGAATGGCTCTCTCCACATCAA
GCCCTGCTGCTTCAATTTCCACACCAGTATCAAGCCACCGGCTACCCTTCCCAAGATCTT
TTGTCACCAGATTCTCTAATGTCTCCTGCGACCCTGAATGGAAGCACAATGAGCACGAAA
TGTGTGTCC
■■Homology search results ■■ -
sp_hit_id O55143
Definition sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Mus musculus
Align length 96
Score (bit) 31.6
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918712|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_F06.
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium...    32   3.3  
sp|P11507|AT2A2_RAT Sarcoplasmic/endoplasmic reticulum calcium A...    30   7.4  
sp|Q00779|AT2A2_FELCA Sarcoplasmic/endoplasmic reticulum calcium...    30   7.4  
sp|O46674|AT2A2_CANFA Sarcoplasmic/endoplasmic reticulum calcium...    30   7.4  
sp|A1CME3|SEC16_ASPCL COPII coat assembly protein sec16 OS=Asper...    30   7.5  
sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calcium A...    30   9.6  
sp|Q9WTJ6|MTL5_MOUSE Tesmin OS=Mus musculus GN=Mtl5 PE=2 SV=2          30   9.7  

>sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium
            ATPase 2 OS=Mus musculus GN=Atp2a2 PE=1 SV=2
          Length = 1044

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -3

Query: 280  FDQEFMMLFQFMYPSTMDQRVLV*LTYDNLLKSAS*FHIYFF*GQRQCLLLLGTACLQQG 101
            FD     +F+  YP TM   VLV +   N L S S           + + L+G+ CL   
Sbjct: 882  FDGVDCAIFESPYPMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMS 941

Query: 100  LLVV*LYIS----LC*G*QINLLQWVHSLNVALCIV 5
            L  + LY+     +     +NL QW+  L ++L ++
Sbjct: 942  LHFLILYVEPLPLIFQITPLNLTQWLMVLKISLPVI 977


>sp|P11507|AT2A2_RAT Sarcoplasmic/endoplasmic reticulum calcium ATPase
            2 OS=Rattus norvegicus GN=Atp2a2 PE=1 SV=1
          Length = 1043

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -3

Query: 259  LFQFMYPSTMDQRVLV*LTYDNLLKSAS*FHIYFF*GQRQCLLLLGTACLQQGLLVV*LY 80
            +F+  YP TM   VLV +   N L S S           + + L+G+ CL   L  + LY
Sbjct: 889  IFESPYPMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILY 948

Query: 79   IS----LC*G*QINLLQWVHSLNVALCIV 5
            +     +     +NL QW+  L ++L ++
Sbjct: 949  VEPLPLIFQITPLNLTQWLMVLKISLPVI 977


>sp|Q00779|AT2A2_FELCA Sarcoplasmic/endoplasmic reticulum calcium
            ATPase 2 OS=Felis silvestris catus GN=ATP2A2 PE=2 SV=1
          Length = 997

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -3

Query: 259  LFQFMYPSTMDQRVLV*LTYDNLLKSAS*FHIYFF*GQRQCLLLLGTACLQQGLLVV*LY 80
            +F+  YP TM   VLV +   N L S S           + + L+G+ CL   L  + LY
Sbjct: 889  IFESPYPMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILY 948

Query: 79   IS----LC*G*QINLLQWVHSLNVALCIV 5
            +     +     +NL QW+  L ++L ++
Sbjct: 949  VEPLPLIFQITPLNLTQWLMVLKISLPVI 977


>sp|O46674|AT2A2_CANFA Sarcoplasmic/endoplasmic reticulum calcium
            ATPase 2 OS=Canis familiaris GN=ATP2A2 PE=2 SV=1
          Length = 997

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -3

Query: 259  LFQFMYPSTMDQRVLV*LTYDNLLKSAS*FHIYFF*GQRQCLLLLGTACLQQGLLVV*LY 80
            +F+  YP TM   VLV +   N L S S           + + L+G+ CL   L  + LY
Sbjct: 889  IFESPYPMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILY 948

Query: 79   IS----LC*G*QINLLQWVHSLNVALCIV 5
            +     +     +NL QW+  L ++L ++
Sbjct: 949  VEPLPLIFQITPLNLTQWLMVLKISLPVI 977


>sp|A1CME3|SEC16_ASPCL COPII coat assembly protein sec16
           OS=Aspergillus clavatus GN=sec16 PE=3 SV=1
          Length = 1875

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
 Frame = +1

Query: 499 PHQYQATGYPSQDLLSP-------DSLMSPATLNGSTMSTKCVS 609
           P +   T  PSQ LLSP       D L  PA+++G+T  TK V+
Sbjct: 852 PPRRSQTQSPSQQLLSPRLSLPPIDPLQRPASVHGATSPTKTVN 895


>sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calcium ATPase
            2 OS=Sus scrofa GN=ATP2A2 PE=2 SV=1
          Length = 1042

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -3

Query: 259  LFQFMYPSTMDQRVLV*LTYDNLLKSAS*FHIYFF*GQRQCLLLLGTACLQQGLLVV*LY 80
            +F+  YP TM   VLV +   N L S S           + + L+G+ CL   L  + LY
Sbjct: 889  VFESPYPMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILY 948

Query: 79   IS----LC*G*QINLLQWVHSLNVALCIV 5
            +     +     +NL QW+  L ++L ++
Sbjct: 949  VEPLPLIFQITPLNLTQWLMVLKISLPVI 977


>sp|Q9WTJ6|MTL5_MOUSE Tesmin OS=Mus musculus GN=Mtl5 PE=2 SV=2
          Length = 475

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 469 SPHQALLLQFPHQYQATGYPSQDLLSPDSLMSPATLNGSTMSTKCVS 609
           SP + +L+  PH  +   + S   LSP     P  L  +  +  C+S
Sbjct: 373 SPERKMLMSTPHYMEPGDFESSHYLSPAKFSGPPKLRKNRQAFSCIS 419
tr_hit_id Q2HTJ8
Definition tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula
Align length 49
Score (bit) 44.7
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918712|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_F06.
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula GN=Mtr...    45   0.004
tr|A7PNM3|A7PNM3_VITVI Chromosome chr8 scaffold_23, whole genome...    44   0.006
tr|A5AF56|A5AF56_VITVI Putative uncharacterized protein OS=Vitis...    44   0.006
tr|A2Q4G6|A2Q4G6_MEDTR Putative uncharacterized protein OS=Medic...    44   0.006
tr|A7PSX1|A7PSX1_VITVI Chromosome chr8 scaffold_29, whole genome...    43   0.012
tr|Q9LZ87|Q9LZ87_ARATH Putative uncharacterized protein T1E22_15...    42   0.036
tr|A9T927|A9T927_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.062
tr|A9TBM4|A9TBM4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.080
tr|Q7Y207|Q7Y207_ARATH Putative uncharacterized protein At4g0044...    39   0.23 
tr|Q7XPR6|Q7XPR6_ORYSJ OSJNBa0065O17.15 protein (Putative unchar...    39   0.23 
tr|Q56WN7|Q56WN7_ARATH Putative uncharacterized protein At4g0044...    39   0.23 
tr|Q0JB34|Q0JB34_ORYSJ Os04g0559200 protein OS=Oryza sativa subs...    39   0.23 
tr|Q01H96|Q01H96_ORYSA B0103C08-B0602B01.7 protein OS=Oryza sati...    39   0.23 
tr|O23058|O23058_ARATH A_IG005I10.23 protein (Putative uncharact...    39   0.23 
tr|A8MQN3|A8MQN3_ARATH Uncharacterized protein At4g00440.3 OS=Ar...    39   0.23 
tr|A8MQI6|A8MQI6_ARATH Uncharacterized protein At4g00440.2 OS=Ar...    39   0.23 
tr|A6N102|A6N102_ORYSI Putative uncharacterized protein (Fragmen...    39   0.23 
tr|A2XWD2|A2XWD2_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.23 
tr|A7PZG7|A7PZG7_VITVI Chromosome chr15 scaffold_40, whole genom...    38   0.40 
tr|Q9M2C6|Q9M2C6_ARATH Putative uncharacterized protein T20K12.2...    37   0.68 
tr|Q0WNA4|Q0WNA4_ARATH Putative uncharacterized protein At3g6138...    37   0.68 
tr|A9SVI9|A9SVI9_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.68 
tr|A5C2J8|A5C2J8_VITVI Putative uncharacterized protein OS=Vitis...    37   0.89 
tr|A7Q441|A7Q441_VITVI Chromosome chr13 scaffold_48, whole genom...    37   1.2  
tr|Q2QNC7|Q2QNC7_ORYSJ Os12g0570500 protein OS=Oryza sativa subs...    35   3.4  
tr|O80829|O80829_ARATH Putative uncharacterized protein At2g4590...    35   3.4  
tr|B8BML0|B8BML0_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.4  
tr|A9SSQ5|A9SSQ5_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A9RKB2|A9RKB2_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|A7QHZ9|A7QHZ9_VITVI Chromosome chr17 scaffold_101, whole geno...    35   3.4  

>tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula
            GN=MtrDRAFT_AC150440g13v2 PE=4 SV=1
          Length = 912

 Score = 44.7 bits (104), Expect = 0.004
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = -3

Query: 562  TLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETLLVL*SQ 416
            TLE +V KD+ +   W+D  ++ E  G D+   IL +L+E+T+L L SQ
Sbjct: 860  TLEQIVRKDMARNGTWMDLRLDAEIVGFDMSDTILAELMEDTILSLVSQ 908


>tr|A7PNM3|A7PNM3_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021316001
           PE=4 SV=1
          Length = 725

 Score = 44.3 bits (103), Expect = 0.006
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = -3

Query: 604 HISCSLCFHSGSQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETL 434
           +IS    +     +TL+ +V++DL KG  W++   E E  GL++E  I DDL++E L
Sbjct: 667 NISWYFSWEPDPDQTLDYVVSRDLAKGDGWMNLQFEAECLGLELEDWIFDDLLDELL 723


>tr|A5AF56|A5AF56_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007129 PE=4 SV=1
          Length = 735

 Score = 44.3 bits (103), Expect = 0.006
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = -3

Query: 604 HISCSLCFHSGSQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETL 434
           +IS    +     +TL+ +V++DL KG  W++   E E  GL++E  I DDL++E L
Sbjct: 677 NISWYFSWEPDPDQTLDYVVSRDLAKGDGWMNLQFEAECLGLELEDWIFDDLLDELL 733


>tr|A2Q4G6|A2Q4G6_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC157473g40v2 PE=4 SV=1
          Length = 65

 Score = 44.3 bits (103), Expect = 0.006
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = -3

Query: 562 TLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETLLVL 425
           TLE +V KD+ +   W+D  ++ E AG ++   IL +LIE+T+L+L
Sbjct: 16  TLEQIVRKDMARNGTWMDLRLDAEIAGFEMGDTILAELIEDTILML 61


>tr|A7PSX1|A7PSX1_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023115001
           PE=4 SV=1
          Length = 787

 Score = 43.1 bits (100), Expect = 0.012
 Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
 Frame = -3

Query: 568 QETLENLVT--KDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETL 434
           QE + N  T  K+L + S WL+ GV++ A G+++ER ++D+L++E +
Sbjct: 739 QEKMANDATLEKELERESEWLNLGVDVNAIGMEIERLVMDELVDEVV 785


>tr|Q9LZ87|Q9LZ87_ARATH Putative uncharacterized protein T1E22_150
           OS=Arabidopsis thaliana GN=T1E22_150 PE=4 SV=1
          Length = 835

 Score = 41.6 bits (96), Expect = 0.036
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = -3

Query: 601 ISCSLCFHS-GSQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETLL 431
           ISC L +     Q++ + ++++DL +   W+D   E E  G++VE  I ++L+EE L+
Sbjct: 776 ISCYLRYKPYDEQQSFDKVMSRDLSRDDGWMDLQFESECVGIEVEDLIFEELLEELLI 833


>tr|A9T927|A9T927_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_89685 PE=4 SV=1
          Length = 1455

 Score = 40.8 bits (94), Expect = 0.062
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
 Frame = -3

Query: 565  ETLENLVTKDL--GKGSRWLDTGVEIEAAGLDVERAILDDLIEETL 434
            +T+  ++ KDL  G+G +W D   E+E  G+ VE+ I+ DLIEET+
Sbjct: 1386 DTVYVILQKDLVRGRGQQWSDYNKELEDVGITVEKMIVKDLIEETV 1431


>tr|A9TBM4|A9TBM4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_90642 PE=4 SV=1
          Length = 1167

 Score = 40.4 bits (93), Expect = 0.080
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -3

Query: 580  HSGSQETLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEE 440
            H    + LE+LV +DL   S WL    +++   L +E+AI DDLIEE
Sbjct: 1114 HDSHNDYLESLVAQDLKSSSSWLALYHDVDRICLKLEKAIYDDLIEE 1160


>tr|Q7Y207|Q7Y207_ARATH Putative uncharacterized protein At4g00440
           OS=Arabidopsis thaliana GN=At4g00440 PE=2 SV=1
          Length = 831

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 559 LENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETLL 431
           L+ +V KD+ +   WLD   +I+  G +    IL++L+EE +L
Sbjct: 765 LDQIVRKDMARAGNWLDIRCDIDCIGFETSELILNELLEELIL 807


>tr|Q7XPR6|Q7XPR6_ORYSJ OSJNBa0065O17.15 protein (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0065O17.15 PE=4 SV=2
          Length = 859

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = -3

Query: 562 TLENLVTKDLGKGSRWLDTGVEIEAAGLDVERAILDDLIEETLLVL 425
           TL+ +V KDL  GS W+D  V+ E   ++V   +LDDL+EE +  L
Sbjct: 813 TLDRVVLKDLESGS-WMDLRVDTEEVAIEVWDTLLDDLLEEMVFDL 857