BP918715 |
Clone id |
YMU001_000116_F09 |
Library |
YMU01 |
Length |
421 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000116_F09. |
Accession |
BP918715 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL17Contig1 |
Sequence |
GTTGCAATAGCCTTTTCACATAAATTTCAATCTGAAAGAGAAATGAAATACAAACAGGAT AATAGAAACCAAAGAAGCTTGCCCATGCCTCGCAACAAATTCCATGGGGGCGAGGTACGG CATGAGGTTTTCCTACATGTTTCGTAAACAGACCATCTATCATCCACCATCTGTTCTTGG CGCATACACTCTCATGCTCTCACTCTGATCCCCTTCATGCAACAAGCCCCTCTCTTTTCG TCCTGGTGTAGCATAGTGGTGCAACACATCGTGGTGATGGACAACCATGGATGGTTGCTC TTCAACCAAATCTACTAGAACGTGCCCTGCTTAATAGAATCTTCGTTCGCCTCTCTAAGT GCAGCTTCATTGAGGTACTTCTCAGCCAATTGCACCCTTTTCACGTTCTCTTGCTCCTTC A |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O98997 |
Definition |
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus |
Align length |
34 |
Score (bit) |
57.0 |
E-value |
3.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918715|Adiantum capillus-veneris mRNA, clone: YMU001_000116_F09. (421 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ... 57 3e-08 sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ... 57 3e-08 sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase... 56 6e-08 sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ... 55 8e-08 sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase... 55 1e-07 sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ... 54 3e-07 sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase... 53 5e-07 sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ... 52 9e-07 sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase... 51 2e-06 sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ... 50 4e-06 sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ... 50 5e-06 sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase... 49 6e-06 sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase... 48 2e-05 sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase ... 47 3e-05 sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase ... 32 1.3 sp|Q48NT5|SURA_PSE14 Chaperone surA OS=Pseudomonas syringae pv. ... 29 6.4 sp|Q4ZMG7|SURA_PSEU2 Chaperone surA OS=Pseudomonas syringae pv. ... 29 8.4 sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caeno... 29 8.4
>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2 Length = 439
Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/34 (79%), Positives = 31/34 (91%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYLNEAAL ANED+IK G+F Sbjct: 404 QEQENVKRVQLADKYLNEAALGNANEDAIKSGSF 437
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3 Length = 433
Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLA+KYLNEAAL EANED++K G+F Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1 Length = 435
Score = 55.8 bits (133), Expect = 6e-08 Identities = 25/34 (73%), Positives = 33/34 (97%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KY++EAAL +AN+D+IK+GTF Sbjct: 402 EEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1 Length = 441
Score = 55.5 bits (132), Expect = 8e-08 Identities = 26/34 (76%), Positives = 31/34 (91%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA++YLNEAAL ANED+IK G+F Sbjct: 406 QEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1 Length = 476
Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/34 (73%), Positives = 32/34 (94%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KY++EAAL +AN D+IK+GTF Sbjct: 402 QEQENVKRVQLADKYMSEAALGDANNDAIKRGTF 435
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2 Length = 466
Score = 53.5 bits (127), Expect = 3e-07 Identities = 25/34 (73%), Positives = 31/34 (91%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 KEQENVKRVQLAE+YL+EAAL +AN D++K G+F Sbjct: 393 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSF 426
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1 Length = 425
Score = 52.8 bits (125), Expect = 5e-07 Identities = 24/34 (70%), Positives = 31/34 (91%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYL+EAAL +AN+D++K G F Sbjct: 389 QEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 422
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1 Length = 437
Score = 52.0 bits (123), Expect = 9e-07 Identities = 24/34 (70%), Positives = 30/34 (88%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYL+EAAL +AN D++ GTF Sbjct: 402 QEQENVKRVQLADKYLSEAALGDANSDAMNTGTF 435
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Length = 442
Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/34 (70%), Positives = 29/34 (85%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYL EAAL +AN D+I G+F Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANADAINNGSF 439
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2 Length = 474
Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/33 (72%), Positives = 29/33 (87%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLAE YL++AAL +AN D+I +GTF Sbjct: 403 EQENVKRVQLAETYLSQAALGDANADAIGRGTF 435
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9AXG0 |
Definition |
tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium hirsutum |
Align length |
33 |
Score (bit) |
57.8 |
E-value |
3.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918715|Adiantum capillus-veneris mRNA, clone: YMU001_000116_F09. (421 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 58 3e-07 tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase ... 58 3e-07 tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment) OS=Goss... 58 3e-07 tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 58 3e-07 tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom... 58 3e-07 tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate car... 57 3e-07 tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxy... 57 5e-07 tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygena... 57 5e-07 tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Popul... 57 6e-07 tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Popul... 57 6e-07 tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07 tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07 tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome... 56 1e-06 tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul... 55 1e-06 tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul... 55 1e-06 tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea... 55 1e-06 tr|Q06B51|Q06B51_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06 tr|Q06B50|Q06B50_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06 tr|Q06B49|Q06B49_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06 tr|Q06B48|Q06B48_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06 tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06 tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06 tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06 tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06 tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ... 54 3e-06 tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis... 54 3e-06 tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy... 54 4e-06 tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 54 5e-06 tr|Q9AT38|Q9AT38_ORYSA Ribulose-1,5-bisphosphate carboxylase act... 54 5e-06 tr|Q8L5W4|Q8L5W4_GOSHI Rubisco activase beta (Fragment) OS=Gossy... 54 5e-06
>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1 Length = 435
Score = 57.8 bits (138), Expect = 3e-07 Identities = 28/33 (84%), Positives = 31/33 (93%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLA+KYL+EAAL EANEDSI +GTF Sbjct: 364 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 396
>tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase (Fragment) OS=Pisum sativum PE=2 SV=1 Length = 50
Score = 57.8 bits (138), Expect = 3e-07 Identities = 27/34 (79%), Positives = 33/34 (97%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYL+EAAL +ANED+IK+GTF Sbjct: 17 QEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50
>tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment) OS=Gossypium hirsutum GN=RCA PE=4 SV=1 Length = 76
Score = 57.8 bits (138), Expect = 3e-07 Identities = 28/33 (84%), Positives = 31/33 (93%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLA+KYL+EAAL EANEDSI +GTF Sbjct: 5 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 37
>tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 OS=Gossypium hirsutum PE=2 SV=1 Length = 421
Score = 57.8 bits (138), Expect = 3e-07 Identities = 28/33 (84%), Positives = 31/33 (93%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLA+KYL+EAAL EANEDSI +GTF Sbjct: 350 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 382
>tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018440001 PE=4 SV=1 Length = 438
Score = 57.8 bits (138), Expect = 3e-07 Identities = 27/34 (79%), Positives = 32/34 (94%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYLNEAAL +ANED+IK G+F Sbjct: 403 QEQENVKRVQLADKYLNEAALGDANEDAIKSGSF 436
>tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase (Fragment) OS=Morus alba var. multicaulis PE=2 SV=1 Length = 246
Score = 57.4 bits (137), Expect = 3e-07 Identities = 27/34 (79%), Positives = 32/34 (94%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 +EQENVKRVQLA+KYL+EAAL +AN+DSIK GTF Sbjct: 176 QEQENVKRVQLADKYLSEAALGDANQDSIKSGTF 209
>tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxygenase activase (Fragment) OS=Zea mays PE=2 SV=2 Length = 308
Score = 57.0 bits (136), Expect = 5e-07 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLA+KYLNEAAL EANED++K G+F Sbjct: 274 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 306
>tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase OS=Zea mays PE=2 SV=1 Length = 433
Score = 57.0 bits (136), Expect = 5e-07 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -3
Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 EQENVKRVQLA+KYLNEAAL EANED++K G+F Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431
>tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 361
Score = 56.6 bits (135), Expect = 6e-07 Identities = 26/34 (76%), Positives = 33/34 (97%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 KEQENVKRVQLA+KYL++AAL EAN+D+I++GTF Sbjct: 326 KEQENVKRVQLADKYLSDAALGEANQDAIERGTF 359
>tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 475
Score = 56.6 bits (135), Expect = 6e-07 Identities = 26/34 (76%), Positives = 33/34 (97%) Frame = -3
Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318 KEQENVKRVQLA+KYL++AAL EAN+D+I++GTF Sbjct: 405 KEQENVKRVQLADKYLSDAALGEANQDAIERGTF 438
|