BP918715
Clone id YMU001_000116_F09
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTTGCAATAGCCTTTTCACATAAATTTCAATCTGAAAGAGAAATGAAATACAAACAGGAT
AATAGAAACCAAAGAAGCTTGCCCATGCCTCGCAACAAATTCCATGGGGGCGAGGTACGG
CATGAGGTTTTCCTACATGTTTCGTAAACAGACCATCTATCATCCACCATCTGTTCTTGG
CGCATACACTCTCATGCTCTCACTCTGATCCCCTTCATGCAACAAGCCCCTCTCTTTTCG
TCCTGGTGTAGCATAGTGGTGCAACACATCGTGGTGATGGACAACCATGGATGGTTGCTC
TTCAACCAAATCTACTAGAACGTGCCCTGCTTAATAGAATCTTCGTTCGCCTCTCTAAGT
GCAGCTTCATTGAGGTACTTCTCAGCCAATTGCACCCTTTTCACGTTCTCTTGCTCCTTC
A
■■Homology search results ■■ -
sp_hit_id O98997
Definition sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus
Align length 34
Score (bit) 57.0
E-value 3.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918715|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_F09.
(421 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ... 57 3e-08
sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ... 57 3e-08
sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase... 56 6e-08
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ... 55 8e-08
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase... 55 1e-07
sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ... 54 3e-07
sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase... 53 5e-07
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ... 52 9e-07
sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase... 51 2e-06
sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ... 50 4e-06
sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ... 50 5e-06
sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase... 49 6e-06
sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase... 48 2e-05
sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase ... 47 3e-05
sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase ... 32 1.3
sp|Q48NT5|SURA_PSE14 Chaperone surA OS=Pseudomonas syringae pv. ... 29 6.4
sp|Q4ZMG7|SURA_PSEU2 Chaperone surA OS=Pseudomonas syringae pv. ... 29 8.4
sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caeno... 29 8.4

>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2
SV=2
Length = 439

Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYLNEAAL ANED+IK G+F
Sbjct: 404 QEQENVKRVQLADKYLNEAALGNANEDAIKSGSF 437


>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433

Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLA+KYLNEAAL EANED++K G+F
Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
PE=2 SV=1
Length = 435

Score = 55.8 bits (133), Expect = 6e-08
Identities = 25/34 (73%), Positives = 33/34 (97%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KY++EAAL +AN+D+IK+GTF
Sbjct: 402 EEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435


>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1
PE=2 SV=1
Length = 441

Score = 55.5 bits (132), Expect = 8e-08
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA++YLNEAAL ANED+IK G+F
Sbjct: 406 QEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
PE=2 SV=1
Length = 476

Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/34 (73%), Positives = 32/34 (94%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KY++EAAL +AN D+IK+GTF
Sbjct: 402 QEQENVKRVQLADKYMSEAALGDANNDAIKRGTF 435


>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Oryza sativa subsp. japonica
GN=RCA PE=1 SV=2
Length = 466

Score = 53.5 bits (127), Expect = 3e-07
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
KEQENVKRVQLAE+YL+EAAL +AN D++K G+F
Sbjct: 393 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSF 426


>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase
activase B, chloroplastic OS=Hordeum vulgare GN=RCAB
PE=2 SV=1
Length = 425

Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYL+EAAL +AN+D++K G F
Sbjct: 389 QEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 422


>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Malus domestica GN=RCA PE=2
SV=1
Length = 437

Score = 52.0 bits (123), Expect = 9e-07
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYL+EAAL +AN D++ GTF
Sbjct: 402 QEQENVKRVQLADKYLSEAALGDANSDAMNTGTF 435


>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase
activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
Length = 442

Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYL EAAL +AN D+I G+F
Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANADAINNGSF 439


>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Arabidopsis thaliana GN=RCA
PE=1 SV=2
Length = 474

Score = 50.1 bits (118), Expect = 4e-06
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLAE YL++AAL +AN D+I +GTF
Sbjct: 403 EQENVKRVQLAETYLSQAALGDANADAIGRGTF 435


tr_hit_id Q9AXG0
Definition tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium hirsutum
Align length 33
Score (bit) 57.8
E-value 3.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918715|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_F09.
(421 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 58 3e-07
tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase ... 58 3e-07
tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment) OS=Goss... 58 3e-07
tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 58 3e-07
tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom... 58 3e-07
tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate car... 57 3e-07
tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxy... 57 5e-07
tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygena... 57 5e-07
tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Popul... 57 6e-07
tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Popul... 57 6e-07
tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome... 56 1e-06
tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul... 55 1e-06
tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul... 55 1e-06
tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea... 55 1e-06
tr|Q06B51|Q06B51_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06
tr|Q06B50|Q06B50_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06
tr|Q06B49|Q06B49_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06
tr|Q06B48|Q06B48_ACERU Chloroplast ribulose-1,5-bisphosphate car... 55 2e-06
tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06
tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06
tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06
tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 54 3e-06
tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ... 54 3e-06
tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis... 54 3e-06
tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy... 54 4e-06
tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 54 5e-06
tr|Q9AT38|Q9AT38_ORYSA Ribulose-1,5-bisphosphate carboxylase act... 54 5e-06
tr|Q8L5W4|Q8L5W4_GOSHI Rubisco activase beta (Fragment) OS=Gossy... 54 5e-06

>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate
carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium
hirsutum PE=2 SV=1
Length = 435

Score = 57.8 bits (138), Expect = 3e-07
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLA+KYL+EAAL EANEDSI +GTF
Sbjct: 364 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 396


>tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase
(Fragment) OS=Pisum sativum PE=2 SV=1
Length = 50

Score = 57.8 bits (138), Expect = 3e-07
Identities = 27/34 (79%), Positives = 33/34 (97%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYL+EAAL +ANED+IK+GTF
Sbjct: 17 QEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50


>tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment)
OS=Gossypium hirsutum GN=RCA PE=4 SV=1
Length = 76

Score = 57.8 bits (138), Expect = 3e-07
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLA+KYL+EAAL EANEDSI +GTF
Sbjct: 5 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 37


>tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate
carboxylase/oxygenase activase alpha 2 OS=Gossypium
hirsutum PE=2 SV=1
Length = 421

Score = 57.8 bits (138), Expect = 3e-07
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLA+KYL+EAAL EANEDSI +GTF
Sbjct: 350 EQENVKRVQLADKYLSEAALGEANEDSINRGTF 382


>tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00018440001
PE=4 SV=1
Length = 438

Score = 57.8 bits (138), Expect = 3e-07
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYLNEAAL +ANED+IK G+F
Sbjct: 403 QEQENVKRVQLADKYLNEAALGDANEDAIKSGSF 436


>tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase activase (Fragment) OS=Morus alba
var. multicaulis PE=2 SV=1
Length = 246

Score = 57.4 bits (137), Expect = 3e-07
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
+EQENVKRVQLA+KYL+EAAL +AN+DSIK GTF
Sbjct: 176 QEQENVKRVQLADKYLSEAALGDANQDSIKSGTF 209


>tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate
carboxylase/oxygenase activase (Fragment) OS=Zea mays
PE=2 SV=2
Length = 308

Score = 57.0 bits (136), Expect = 5e-07
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLA+KYLNEAAL EANED++K G+F
Sbjct: 274 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 306


>tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygenase
activase OS=Zea mays PE=2 SV=1
Length = 433

Score = 57.0 bits (136), Expect = 5e-07
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -3

Query: 416 EQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
EQENVKRVQLA+KYLNEAAL EANED++K G+F
Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 361

Score = 56.6 bits (135), Expect = 6e-07
Identities = 26/34 (76%), Positives = 33/34 (97%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
KEQENVKRVQLA+KYL++AAL EAN+D+I++GTF
Sbjct: 326 KEQENVKRVQLADKYLSDAALGEANQDAIERGTF 359


>tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 475

Score = 56.6 bits (135), Expect = 6e-07
Identities = 26/34 (76%), Positives = 33/34 (97%)
Frame = -3

Query: 419 KEQENVKRVQLAEKYLNEAALREANEDSIKQGTF 318
KEQENVKRVQLA+KYL++AAL EAN+D+I++GTF
Sbjct: 405 KEQENVKRVQLADKYLSDAALGEANQDAIERGTF 438