NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918725
Clone id YMU001_000116_G08
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAGAATGATGATGATGATGGGGCCAAATTACAATGGACCGGATGTGATACAGCAAGT
GCTGGTGATGGTGAGGATGAGGGAAAATTACAATGGACCGGACGTGTAGCGGCGGGCGAC
AGTACTTCGCGGGCGCGGATACGACATGGATGATCTGAGATAGTCGACGGTGGTGGCAGG
CTGCCGGCAAAAGCTCCTTTCTGAGGAGGGAGAGAGGCTAATTGAGCGGAGTTAGTGAGA
AGGGGAGGCACTCTGTGTAAACGGCAACGGAAGGAGCCCTCATGGGTAGTGGGGGCGCAA
AGGCAGGCCATACTAATTAAATGAGGATCGAAGCCAGGATTATGAAGAAGTGTACATAAT
TTACAAGCAATTAACGGTCTGACAGAGAGATTACTGGCCCATTGTTAGAGAAAATGGCAG
CTAATTA
■■Homology search results ■■ -
sp_hit_id Q2EG98
Definition sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
Align length 55
Score (bit) 31.6
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918725|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_G08.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3...    32   1.4  
sp|A2AHL1|ANO3_MOUSE Anoctamin-3 OS=Mus musculus GN=Ano3 PE=2 SV=1     30   4.0  
sp|Q8VHH5|AGAP3_MOUSE Arf-GAP, GTPase, ANK repeat and PH domain-...    30   4.0  
sp|Q86YV5|SG223_HUMAN Tyrosine-protein kinase SgK223 OS=Homo sap...    30   5.2  
sp|Q97TA7|RECO_STRPN DNA repair protein recO OS=Streptococcus pn...    29   6.8  
sp|Q5LR50|RS6_SILPO 30S ribosomal protein S6 OS=Silicibacter pom...    29   7.0  
sp|Q9H8N7|ZN395_HUMAN Zinc finger protein 395 OS=Homo sapiens GN...    29   8.8  
sp|Q92TC8|TRPA_RHIME Tryptophan synthase alpha chain OS=Rhizobiu...    29   8.8  
sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like su...    29   8.8  
sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-pro...    29   8.8  
sp|Q62407|SPEG_MOUSE Striated muscle-specific serine/threonine-p...    29   8.8  
sp|Q9GSX9|RIC8_CAEEL Synembryn OS=Caenorhabditis elegans GN=ric-...    29   8.8  

>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3
           OS=Mus musculus GN=Pkd1l3 PE=2 SV=1
          Length = 2201

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 248 PPLLTNSAQLASLPPQKGA-FAGSLPPPSTISDHPCRIRAREVLS--PAATRPVH 93
           PP +T+    +S PPQ  +  + S+ PP  ISD P      +V S  PA++ P +
Sbjct: 512 PPQVTSETPASSSPPQVTSDTSASISPPQVISDTPASSSPPQVTSETPASSSPTN 566


>sp|A2AHL1|ANO3_MOUSE Anoctamin-3 OS=Mus musculus GN=Ano3 PE=2 SV=1
          Length = 981

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 242 LLTNSAQLASLPPQKGAFAGSLP 174
           L+TN + +A+ PP +GA+  SLP
Sbjct: 330 LITNGSYIAAFPPHEGAYKSSLP 352


>sp|Q8VHH5|AGAP3_MOUSE Arf-GAP, GTPase, ANK repeat and PH
           domain-containing protein 3 OS=Mus musculus GN=Agap3
           PE=1 SV=1
          Length = 910

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 245 PLLTNSAQLASLPPQKGAFAGSLPPPSTISDHPCRIRAREVLSPAATRP 99
           P   +S  L S  P   A+AGS P P  +    C + + +  S AA  P
Sbjct: 500 PHSASSTSLHSERPHSSAWAGSRPGPEGLHQRSCSVSSTDQWSEAAALP 548


>sp|Q86YV5|SG223_HUMAN Tyrosine-protein kinase SgK223 OS=Homo
           sapiens GN=SGK223 PE=1 SV=2
          Length = 1406

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 239 LTNSAQLASLPPQKGAFAGSLPPPSTISDHP--CRIRAREVLSPAATRP 99
           L +  QL + PPQ  A  GSLPPP  +   P  CR+    V S   ++P
Sbjct: 36  LRSDHQLVAGPPQPRA--GSLPPPPRLPPRPENCRLEDEGVNSSPYSKP 82


>sp|Q97TA7|RECO_STRPN DNA repair protein recO OS=Streptococcus
           pneumoniae GN=recO PE=3 SV=1
          Length = 256

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = -3

Query: 356 CTLLHNPG--FDPHLISMACLCAPTTHEGSFRCRLHRVPPLLTNSAQ 222
           C   H  G  FD      ACLC    HE   RC L+   P L N  Q
Sbjct: 153 CVFCHRVGQAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQ 199


>sp|Q5LR50|RS6_SILPO 30S ribosomal protein S6 OS=Silicibacter
           pomeroyi GN=rpsF PE=3 SV=1
          Length = 117

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 185 RQKLLSEEGERLIERS**EGEALCVNGNGRSPHG*WGRKGRPY*LNEDRSQDY 343
           RQ L + + E LIE     G  L  NG     H  WG K   Y +N++R   Y
Sbjct: 11  RQDLSNTQAEGLIEHF---GAVLSDNGGSLVDHEYWGVKTMAYKINKNRKGHY 60


>sp|Q9H8N7|ZN395_HUMAN Zinc finger protein 395 OS=Homo sapiens
           GN=ZNF395 PE=1 SV=2
          Length = 513

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 218 ASLPPQKGAFAGSLPPPSTISDH-PCRIRAREVLSPAAT 105
           ++ PP +    G+ P P T SD  PC+ + +EVL   +T
Sbjct: 29  SAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKEVLKAPST 67


>sp|Q92TC8|TRPA_RHIME Tryptophan synthase alpha chain OS=Rhizobium
           meliloti GN=trpA PE=3 SV=1
          Length = 279

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
 Frame = -3

Query: 302 LCAPTTHEGSFRCRL-------HRVPPLLTNSAQLASLPPQKGAFAGSLPPPSTISDHPC 144
           LC P   +G    RL        R+P +L N++         G    +LP PS I+    
Sbjct: 140 LCIPALEKGISFIRLATPTTDDRRLPKVLENTSGFVYYVSMTGITGSALPDPSLIAGAVA 199

Query: 143 RIRAREVL 120
           RI+A   L
Sbjct: 200 RIKAHTPL 207


>sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like
           subunit OS=Candida glabrata GN=SSN8 PE=3 SV=1
          Length = 339

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 332 FDPHLISMACLCAPTTHEGSFRCRLHRVPPLLTNSAQLASLPPQKGAF 189
           + PH+I+MACL    + +GS    L     +       +SL PQ+  F
Sbjct: 242 YAPHIIAMACLFITVSIQGSNTKELSLTSAVTETLTSQSSLTPQQQTF 289


>sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein
            kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2
          Length = 3259

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 326  PHLISMACLCAPTTHEGSFRCRLHRVPPLLTNSAQLASLPPQKG-AFAGSL 177
            PH    A + +P       R    R+PP+L    ++ ++PP+ G + +GS+
Sbjct: 2275 PHAAVFARVASPPPGASEKRVPSARIPPVLAEKVRVPTVPPRPGSSLSGSI 2325
tr_hit_id Q6H886
Definition tr|Q6H886|Q6H886_ORYSJ Putative uncharacterized protein OJ1572_F02.6 (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 41
Score (bit) 52.0
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918725|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_G08.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6H886|Q6H886_ORYSJ Putative uncharacterized protein OJ1572_F...    52   1e-05
tr|A2X1P3|A2X1P3_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|A5AWM3|A5AWM3_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea...    47   5e-04
tr|A7QXY0|A7QXY0_VITVI Chromosome undetermined scaffold_235, who...    47   5e-04
tr|Q69V63|Q69V63_ORYSJ Os06g0608000 protein OS=Oryza sativa subs...    47   6e-04
tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|A9P9J5|A9P9J5_POPTR Putative uncharacterized protein OS=Popul...    47   6e-04
tr|A3BDF7|A3BDF7_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A2YEW1|A2YEW1_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|Q5ZF84|Q5ZF84_PLAMJ Putative uncharacterized protein OS=Plant...    46   0.001
tr|Q9ZTM9|Q9ZTM9_PETHY PGPS/D10 OS=Petunia hybrida GN=PGPS/D10 P...    45   0.001
tr|Q56YG8|Q56YG8_ARATH Putative uncharacterized protein OS=Arabi...    45   0.002
tr|A0MDW2|A0MDW2_ARATH Putative uncharacterized protein (Fragmen...    45   0.002
tr|Q69QY6|Q69QY6_ORYSJ Os02g0799600 protein OS=Oryza sativa subs...    45   0.002
tr|B8AED7|B8AED7_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A9RHQ5|A9RHQ5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q9C9V7|Q9C9V7_ARATH Putative uncharacterized protein T23K23.2...    44   0.003
tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa ...    44   0.003
tr|Q7F8Y8|Q7F8Y8_ORYSJ OSJNBb0116K07.4 protein OS=Oryza sativa s...    44   0.003
tr|A3AVC8|A3AVC8_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A2XVA5|A2XVA5_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|A9NKK5|A9NKK5_PICSI Putative uncharacterized protein OS=Picea...    44   0.004
tr|Q9FY56|Q9FY56_ARATH Putative uncharacterized protein T5K6_80 ...    44   0.005
tr|B8LP28|B8LP28_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|A9NRP8|A9NRP8_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_15...    43   0.007
tr|Q9FKU6|Q9FKU6_ARATH Genomic DNA, chromosome 5, P1 clone:MDA7 ...    43   0.007
tr|A9U197|A9U197_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|A9U137|A9U137_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007

>tr|Q6H886|Q6H886_ORYSJ Putative uncharacterized protein
           OJ1572_F02.6 (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=OJ1572_F02.6 PE=4 SV=1
          Length = 115

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = -3

Query: 326 PHLISMACLCAPTTHEGSFRCRLHRVPPLLTNSAQLASLPP 204
           P  ++  CLCAPTTH GSFRCRLHR  P  T  A+ A +PP
Sbjct: 24  PAAVAKYCLCAPTTHPGSFRCRLHR-SPAATAKAKAAIVPP 63


>tr|A2X1P3|A2X1P3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06122 PE=4 SV=1
          Length = 114

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = -3

Query: 326 PHLISMACLCAPTTHEGSFRCRLHRVPPLLTNSAQLASLPP 204
           P  ++  CLCAPTTH GSFRCRLHR  P  T  A+ A +PP
Sbjct: 24  PAAVAKYCLCAPTTHPGSFRCRLHR-SPAATAKAKAAIVPP 63


>tr|A5AWM3|A5AWM3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006791 PE=4 SV=1
          Length = 526

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -3

Query: 305 CLCAPTTHEGSFRCRLHRVPPL-----LTNSAQLASLPPQKGAFAGSLPPPSTI 159
           CLC+PTTH GSFRCRLHR P L     + +++Q  S P    A   +    +T+
Sbjct: 470 CLCSPTTHAGSFRCRLHRAPSLQRTKSIDSASQRESFPKVNSASGNTTNNANTV 523


>tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 99

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -3

Query: 305 CLCAPTTHEGSFRCRLHRVP 246
           CLC+PTTHEGSFRCRLHR P
Sbjct: 48  CLCSPTTHEGSFRCRLHRSP 67


>tr|A7QXY0|A7QXY0_VITVI Chromosome undetermined scaffold_235, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00009455001 PE=4 SV=1
          Length = 76

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
 Frame = -3

Query: 305 CLCAPTTHEGSFRCRLHRVPPL-----LTNSAQLASLP 207
           CLC+PTTH GSFRCRLHR P L     + +++Q  S P
Sbjct: 38  CLCSPTTHAGSFRCRLHRAPSLQRTKSMDSASQRESFP 75


>tr|Q69V63|Q69V63_ORYSJ Os06g0608000 protein OS=Oryza sativa subsp.
           japonica GN=P0556B08.11-1 PE=4 SV=1
          Length = 123

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -3

Query: 326 PHLISMACLCAPTTHEGSFRCRLHR 252
           P + S +CLC+PTTH GSFRCRLHR
Sbjct: 70  PRVASPSCLCSPTTHAGSFRCRLHR 94


>tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93133 PE=4 SV=1
          Length = 429

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = -3

Query: 314 SMACLCAPTTHEGSFRCRLHR 252
           +M+CLCAPTTH GSFRCRLHR
Sbjct: 123 TMSCLCAPTTHAGSFRCRLHR 143


>tr|A9P9J5|A9P9J5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 99

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/33 (66%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -3

Query: 305 CLCAPTTHEGSFRCRLHRVPPL-LTNSAQLASL 210
           CLC+PT+H GSFRCRLHR P L  T S   ASL
Sbjct: 44  CLCSPTSHAGSFRCRLHRAPSLQRTKSIDSASL 76


>tr|A3BDF7|A3BDF7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021079 PE=4 SV=1
          Length = 139

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -3

Query: 326 PHLISMACLCAPTTHEGSFRCRLHR 252
           P + S +CLC+PTTH GSFRCRLHR
Sbjct: 70  PRVASPSCLCSPTTHAGSFRCRLHR 94


>tr|A2YEW1|A2YEW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23656 PE=4 SV=1
          Length = 138

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -3

Query: 326 PHLISMACLCAPTTHEGSFRCRLHR 252
           P + S +CLC+PTTH GSFRCRLHR
Sbjct: 70  PRVASPSCLCSPTTHAGSFRCRLHR 94