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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918735
Clone id YMU001_000116_H06
Library
Length 443
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCAAATAAAAATTGTTCATATTACCACCCGCCTTGTGATCTACTGACTTTGCTACACTT
CTATACCAGCCTGTGATGAATGTAAAGCATACACCCAAGAGGTTTATTGAATTCTTAACC
TAAATTCGAGTTCTTTGGACAACTTTTCCACAGCCGCTCTACTTCAACCTTCGGTCTTGT
GCTTCCACCAATCGAGAAACCTCAAATTCGTATCCATGCAATCAATCTTATGTAGACCGT
AAGCGAGCCTGGCACCCTCTTCTGCTACGCTCCATCCAACAATCGCACCCGCCACAAGTG
AAAGTAGTAATCCATGTGGAGCCCTTGAATATCTTGCCGCCACAGCTGTTGTAGTTAGCC
CTCCAACAACAGCTCCTCCCGCTGATATCTTTGCTGCTTCTCTAACAAGCTTTAACTGGG
GTCCATAAACTGGATCGGAGTGA
■■Homology search results ■■ -
sp_hit_id Q7N577
Definition sp|Q7N577|LUXC_PHOLL Acyl-CoA reductase OS=Photorhabdus luminescens subsp. laumondii
Align length 41
Score (bit) 33.1
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918735|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_H06.
         (443 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7N577|LUXC_PHOLL Acyl-CoA reductase OS=Photorhabdus luminesc...    33   0.53 
sp|Q5R989|MTMRC_PONAB Myotubularin-related protein 12 OS=Pongo a...    32   0.90 
sp|Q9C0I1|MTMRC_HUMAN Myotubularin-related protein 12 OS=Homo sa...    32   0.90 
sp|P23113|LUXC_PHOLU Acyl-CoA reductase OS=Photorhabdus luminesc...    30   3.4  
sp|Q5FVM6|MTMRC_RAT Myotubularin-related protein 12 OS=Rattus no...    29   7.7  
sp|Q80TA6|MTMRC_MOUSE Myotubularin-related protein 12 OS=Mus mus...    29   7.7  
sp|Q49420|CSD_MYCGE Probable cysteine desulfurase OS=Mycoplasma ...    29   10.0 

>sp|Q7N577|LUXC_PHOLL Acyl-CoA reductase OS=Photorhabdus luminescens
           subsp. laumondii GN=luxC PE=3 SV=1
          Length = 480

 Score = 33.1 bits (74), Expect = 0.53
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 195 SIGGSTRPKVEVERLWKSCPKNSNLG*EFNKPLGCMLYIHH 73
           S+    + +V+V + W      SN G EFN+PLG  +Y+HH
Sbjct: 339 SLFAGLKVEVDVHQRWMII--ESNAGVEFNQPLGRCVYLHH 377


>sp|Q5R989|MTMRC_PONAB Myotubularin-related protein 12 OS=Pongo
           abelii GN=MTMR12 PE=2 SV=1
          Length = 747

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 125 FEFFGQLFHSRSTSTFGLVLPPIEKPQIRIHA 220
           F  F   +HS+ST   GL+LP IE P+I++ A
Sbjct: 609 FREFYDSWHSKSTDYHGLLLPHIEGPEIKVWA 640


>sp|Q9C0I1|MTMRC_HUMAN Myotubularin-related protein 12 OS=Homo
           sapiens GN=MTMR12 PE=1 SV=2
          Length = 747

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 125 FEFFGQLFHSRSTSTFGLVLPPIEKPQIRIHA 220
           F  F   +HS+ST   GL+LP IE P+I++ A
Sbjct: 609 FREFYDSWHSKSTDYHGLLLPHIEGPEIKVWA 640


>sp|P23113|LUXC_PHOLU Acyl-CoA reductase OS=Photorhabdus luminescens
           GN=luxC PE=3 SV=2
          Length = 480

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 171 KVEVERLWKSCPKNSNLG*EFNKPLGCMLYIHH 73
           KVEV+   +     SN G E N+PLG  +Y+HH
Sbjct: 345 KVEVDVHQRWMVIESNAGVELNQPLGRCVYLHH 377


>sp|Q5FVM6|MTMRC_RAT Myotubularin-related protein 12 OS=Rattus
           norvegicus GN=Mtmr12 PE=2 SV=2
          Length = 748

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 128 EFFGQLFHSRSTSTFGLVLPPIEKPQIRIHA 220
           EF+   +HS+ T   GL+LP IE P+I++ A
Sbjct: 612 EFYDN-WHSKPTDYHGLLLPHIEGPEIKVWA 641


>sp|Q80TA6|MTMRC_MOUSE Myotubularin-related protein 12 OS=Mus
           musculus GN=Mtmr12 PE=2 SV=2
          Length = 747

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 134 FGQLFHSRSTSTFGLVLPPIEKPQIRIHA 220
           F   +HS+ T   GL+LP IE P+I++ A
Sbjct: 612 FYDSWHSKPTDYHGLLLPHIEGPEIKVWA 640


>sp|Q49420|CSD_MYCGE Probable cysteine desulfurase OS=Mycoplasma
           genitalium GN=csd PE=3 SV=1
          Length = 408

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 232 HKIDCMDTNLRFLDWWKHKTEG*SRAAVEKLSKELEFRLR 113
           HKID    N+ FL +  HK  G +   +  +  EL+ RL+
Sbjct: 207 HKIDITSANIDFLTFSTHKFYGPTGLGIAFIKSELQSRLK 246
tr_hit_id A9U0W1
Definition tr|A9U0W1|A9U0W1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 89
Score (bit) 94.4
E-value 3.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918735|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_H06.
         (443 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0W1|A9U0W1_PHYPA Predicted protein OS=Physcomitrella paten...    94   3e-18
tr|A9S3M4|A9S3M4_PHYPA Predicted protein OS=Physcomitrella paten...    87   5e-16
tr|A9NQR3|A9NQR3_PICSI Putative uncharacterized protein OS=Picea...    80   4e-14
tr|Q6ZCC4|Q6ZCC4_ORYSJ Os08g0112800 protein OS=Oryza sativa subs...    75   2e-12
tr|A2YQL0|A2YQL0_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|B8A3B3|B8A3B3_MAIZE Putative uncharacterized protein OS=Zea m...    74   3e-12
tr|B4FL77|B4FL77_MAIZE Putative uncharacterized protein OS=Zea m...    74   3e-12
tr|Q941A6|Q941A6_ARATH At1g08480/T27G7_10 OS=Arabidopsis thalian...    74   5e-12
tr|A9NM90|A9NM90_PICSI Putative uncharacterized protein OS=Picea...    72   1e-11
tr|A7Q1H5|A7Q1H5_VITVI Chromosome chr7 scaffold_44, whole genome...    72   2e-11
tr|A9P8C2|A9P8C2_POPTR Putative uncharacterized protein OS=Popul...    59   9e-08
tr|Q1EMM1|Q1EMM1_PLAMJ Putative uncharacterized protein (Fragmen...    52   1e-05
tr|A3RVW5|A3RVW5_RALSO Hypothetical cytosolic protein OS=Ralston...    35   1.4  
tr|Q013F8|Q013F8_OSTTA Ubiquitin system component Cue domain-con...    34   4.1  
tr|B8BRV4|B8BRV4_THAPS Predicted protein OS=Thalassiosira pseudo...    34   4.1  
tr|B8APW6|B8APW6_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|Q93CP6|Q93CP6_PHOLU Fatty acid reductase OS=Photorhabdus lumi...    33   7.0  
tr|Q15ZB3|Q15ZB3_PSEA6 UDP-N-acetylmuramate OS=Pseudoalteromonas...    33   9.2  
tr|Q56817|Q56817_PHOLU Fatty acid reductase OS=Photorhabdus lumi...    33   9.2  
tr|A9SSJ0|A9SSJ0_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.2  

>tr|A9U0W1|A9U0W1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_110635 PE=4 SV=1
          Length = 141

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 45/89 (50%), Positives = 57/89 (64%)
 Frame = -2

Query: 442 HSDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVA 263
           +SDPVYGPQLKLVR+ A I+                RYS+   G + + + GA + W+VA
Sbjct: 51  NSDPVYGPQLKLVRQGATIANVGALVGGLATAGIALRYSKNLPGAVGAFLGGAAMSWAVA 110

Query: 262 EEGARLAYGLHKIDCMDTNLRFLDWWKHK 176
           EEGA L  GL+K +CMDTNLRFLDWW+ K
Sbjct: 111 EEGANLGLGLYKFNCMDTNLRFLDWWERK 139


>tr|A9S3M4|A9S3M4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162641 PE=4 SV=1
          Length = 141

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 41/88 (46%), Positives = 53/88 (60%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGP+LK VR+ A I+                RYS+   G L + + G  + W+VAE
Sbjct: 52  SDPVYGPRLKQVRQGATIANYGALVGGLATAGVAFRYSKNIPGALGAFLGGTAMSWAVAE 111

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHK 176
           EGA  A GL+K +CMD NL+FLDWW+ K
Sbjct: 112 EGANFALGLYKFNCMDVNLKFLDWWERK 139


>tr|A9NQR3|A9NQR3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 149

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 41/91 (45%), Positives = 51/91 (56%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGPQLKL R+AAKI+                +YSR   G +LS  AGA  GW   +
Sbjct: 57  SDPVYGPQLKLTRQAAKIAATGSVIGAVSTAGVSWKYSRHGIGAILSFGAGAAFGWVFGK 116

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A     L+K D MD  L+F +WW+ K+EG
Sbjct: 117 EIANHTLRLYKFDSMDAQLKFFEWWEKKSEG 147


>tr|Q6ZCC4|Q6ZCC4_ORYSJ Os08g0112800 protein OS=Oryza sativa subsp.
           japonica GN=P0498H04.25 PE=2 SV=1
          Length = 142

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/91 (42%), Positives = 50/91 (54%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGPQLK +RE+ K +                +YS+APHG++L+   GAI G  V  
Sbjct: 48  SDPVYGPQLKAMRESRKFALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGS 107

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A   Y L+K D    NLRF+ WW+ K  G
Sbjct: 108 EVAEHWYQLYKTDKQGANLRFIYWWEDKVAG 138


>tr|A2YQL0|A2YQL0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27576 PE=4 SV=1
          Length = 142

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/91 (42%), Positives = 50/91 (54%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGPQLK +RE+ K +                +YS+APHG++L+   GAI G  V  
Sbjct: 48  SDPVYGPQLKAMRESRKFALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGS 107

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A   Y L+K D    NLRF+ WW+ K  G
Sbjct: 108 EVAEHWYQLYKTDKQGANLRFIYWWEDKVAG 138


>tr|B8A3B3|B8A3B3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 38/91 (41%), Positives = 51/91 (56%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGPQLK +RE+ K +                +YS+APHG+LL+   GAI G  +  
Sbjct: 48  SDPVYGPQLKALRESRKFALAGALVGAAHLGGVALKYSKAPHGVLLATGFGAITGAVLGS 107

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A   Y L+++D    NLRF+ WW+ K  G
Sbjct: 108 EVADHWYQLYEMDKQGANLRFIYWWEDKVSG 138


>tr|B4FL77|B4FL77_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 38/91 (41%), Positives = 51/91 (56%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGPQLK +RE+ K +                +YS+APHG+LL+   GAI G  +  
Sbjct: 48  SDPVYGPQLKALRESRKFALAGALVGAAHLGGVALKYSKAPHGVLLATGFGAITGAVLGS 107

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A   Y L+++D    NLRF+ WW+ K  G
Sbjct: 108 EVADHWYQLYEMDKQGANLRFIYWWEDKVSG 138


>tr|Q941A6|Q941A6_ARATH At1g08480/T27G7_10 OS=Arabidopsis thaliana
           GN=At1g08480 PE=2 SV=1
          Length = 142

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 32/90 (35%), Positives = 48/90 (53%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPV+GP LK  REA                    +YSR+PHG  LS + G + GW+  +
Sbjct: 53  SDPVHGPTLKTAREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQ 112

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTE 170
           E A     L+K+D M   ++F++WW+ K++
Sbjct: 113 EVANHTLQLYKLDTMAAQVKFMEWWERKSQ 142


>tr|A9NM90|A9NM90_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 147

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 39/91 (42%), Positives = 49/91 (53%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGPQL   R+AAKI+                +YSR   G +LS  AGA  GW   +
Sbjct: 57  SDPVYGPQL--TRQAAKIAATGSVIGAVSTAGVSWKYSRHGIGAILSFGAGAAFGWVFGK 114

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A     L+K D MD  L+F +WW+ K+EG
Sbjct: 115 EIANHTLRLYKFDSMDAQLKFFEWWEKKSEG 145


>tr|A7Q1H5|A7Q1H5_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028466001
           PE=4 SV=1
          Length = 146

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/91 (37%), Positives = 49/91 (53%)
 Frame = -2

Query: 439 SDPVYGPQLKLVREAAKISXXXXXXXXXXXXXXXARYSRAPHGLLLSLVAGAIVGWSVAE 260
           SDPVYGP L+  REAAK +                +YSR+PHG  LS  AG + G +  +
Sbjct: 54  SDPVYGPTLRTTREAAKFAVAGAVIGAVSTAAVSWKYSRSPHGAALSFAAGGVFGVTFGQ 113

Query: 259 EGARLAYGLHKIDCMDTNLRFLDWWKHKTEG 167
           E A     L+++D +   ++FL+WW+ K  G
Sbjct: 114 EFASHWLQLYRLDTLGAEVKFLEWWERKIGG 144