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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918740
Clone id YMU001_000116_H11
Library
Length 276
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000116_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGACACTTATGAGCTAGATGTGAAGGAGGCATACAACCGAGACTATCGGAATGTATACAC
CCGAGATGTGAAGGAGGTGTACAGTCAGGATCCAGCCATAAGCAAGCAAGTAGGTTATGG
CTATGCAAGTAGTAACAATGGTGATAATTCATGGAGAGGCCATTCAAGTCATGCAGATCC
TCCATATGTCCGGGGGGTTGCTAGTCCTGCAGGCATTTCACCTTCCCACAATCCAAGTTC
AGTCTATGATTCTCACTATGGTAAGCAATATGGATC
■■Homology search results ■■ -
sp_hit_id Q54EH1
Definition sp|Q54EH1|EPN_DICDI Epsin OS=Dictyostelium discoideum
Align length 51
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918740|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_H11.
         (276 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54EH1|EPN_DICDI Epsin OS=Dictyostelium discoideum GN=epnA PE...    32   1.3  
sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Sc...    30   3.8  
sp|A3QFL1|ACKA_SHELP Acetate kinase OS=Shewanella loihica (strai...    30   3.8  
sp|Q9Y4L5|RN115_HUMAN RING finger protein 115 OS=Homo sapiens GN...    30   4.9  
sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Deba...    30   4.9  
sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Cand...    30   4.9  
sp|P41213|LDOX_MAIZE Leucoanthocyanidin dioxygenase OS=Zea mays ...    29   6.4  
sp|Q5ZJ25|FFR_CHICK Protein fat-free homolog OS=Gallus gallus GN...    29   6.4  
sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-bindin...    29   6.4  
sp|Q2I6J0|SHP2B_DANRE Phosphatidylinositol-3,4,5-trisphosphate 5...    29   8.4  
sp|P36161|NU133_YEAST Nucleoporin NUP133 OS=Saccharomyces cerevi...    29   8.4  
sp|P49869|HR38_DROME Probable nuclear hormone receptor HR38 OS=D...    29   8.4  
sp|Q7TN98|CPEB4_MOUSE Cytoplasmic polyadenylation element-bindin...    29   8.4  
sp|Q6AYN3|CJ062_RAT Uncharacterized protein C10orf62 homolog OS=...    29   8.4  

>sp|Q54EH1|EPN_DICDI Epsin OS=Dictyostelium discoideum GN=epnA PE=3
           SV=1
          Length = 686

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +2

Query: 2   DTYELDVKEAYNRDYRNVYTRDVKEVYSQDPAISKQVGYGYASSNNGDNSW 154
           D+Y  + +++Y  + R+ Y  + +E   +D    +  GYG  ++NN +NS+
Sbjct: 188 DSYGGNQRDSYGGNQRDSYGGNQRETTRRDSFNGRDEGYGNNNNNNNNNSY 238


>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1
           OS=Schizosaccharomyces pombe GN=SPAC22G7.10 PE=2 SV=1
          Length = 344

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 131 SNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVYDSHYGKQY 271
           +NN  +S R   S A+ P +   A      P+HNP+S Y +     Y
Sbjct: 253 NNNPSSSRRESESPANSPNITSSAGMTHAQPTHNPTSSYGNGASTNY 299


>sp|A3QFL1|ACKA_SHELP Acetate kinase OS=Shewanella loihica (strain
           ATCC BAA-1088 / PV-4) GN=ackA PE=3 SV=1
          Length = 398

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 68  VKEVYSQDPAISKQV-GYGYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPS 238
           VKE+  Q P ++ Q+   G+   + G+     HS   D   + G+   A ++P HNP+
Sbjct: 71  VKEILGQYPDVAAQIQAIGHRVVHGGEKFT--HSVVIDDSVIAGIEDCAALAPLHNPA 126


>sp|Q9Y4L5|RN115_HUMAN RING finger protein 115 OS=Homo sapiens
          GN=RNF115 PE=2 SV=2
          Length = 304

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 19 CEGGIQPRLSECIHPRCEGG 78
          C+G + P+L E I PRCE G
Sbjct: 25 CKGEVSPKLPEYICPRCESG 44


>sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1
           OS=Debaryomyces hansenii GN=YTH1 PE=3 SV=2
          Length = 223

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -2

Query: 173 HDLNGLSMNYHHCYYLHSHNLL---ACLWLDPD--CTPPSHLGCIHSDSLGCMPP 24
           H L GL     HC +LH +NL     CL+   +  CT       +H D    +PP
Sbjct: 73  HWLRGLCKKNDHCEFLHEYNLRKMPECLFYSKNGFCTQTPECLYLHVDPQSKIPP 127


>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida
           glabrata GN=YTH1 PE=3 SV=1
          Length = 209

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -2

Query: 173 HDLNGLSMNYHHCYYLHSHNLL---ACLWLDPD--CTPPSHLGCIHSDSLGCMPP 24
           H L GL     +C YLH +NL     C++   +  CT       +H D L  +PP
Sbjct: 70  HWLRGLCKKNDNCEYLHEYNLRKMPECVFYAKNGFCTQSPECQYLHIDPLSKVPP 124


>sp|P41213|LDOX_MAIZE Leucoanthocyanidin dioxygenase OS=Zea mays
           GN=A2 PE=2 SV=1
          Length = 395

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 71  KEVYSQDPAISKQVGYG--YASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSV 244
           KE Y+ DPA  +  GYG   A++  G   W  +  H   P   G+A  A + P++ P  +
Sbjct: 123 KEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHP--DGLADHA-LWPAYPPDYI 179


>sp|Q5ZJ25|FFR_CHICK Protein fat-free homolog OS=Gallus gallus
           GN=FFR PE=2 SV=1
          Length = 787

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +2

Query: 38  RDYRNVYTRDVKEVYSQDPAISKQVGYGYASSNNGDNSWRGHSSHADPPYVRGVASPAGI 217
           R+ R V  R V+++ + D  + +    G   + + D+S R  S ++         +P   
Sbjct: 612 RNVRAVMKRVVEDITAIDVQVGQLFEEGVRRAQSSDSSRRAFSVYSSS------RAPGRY 665

Query: 218 SPSHNPSSVYDSH 256
           +PS+ PS+  D+H
Sbjct: 666 APSYTPSAPMDTH 678


>sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-binding
           protein 4 OS=Homo sapiens GN=CPEB4 PE=1 SV=1
          Length = 729

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +2

Query: 77  VYSQDPAISKQVGYGYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVYDSH 256
           + ++D +   Q G   AS+NNG   ++    H  P +    +   G    H+P   +  H
Sbjct: 182 IINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQH 241

Query: 257 YGKQY 271
           +  Q+
Sbjct: 242 HHSQH 246


>sp|Q2I6J0|SHP2B_DANRE Phosphatidylinositol-3,4,5-trisphosphate
            5-phosphatase 2B OS=Danio rerio GN=inppl1b PE=2 SV=1
          Length = 1226

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 65   DVKEVYSQDPAISKQVGYGYASSNNGDNSWRGHSS--HADPPYVRGVASPAGI 217
            D K  + Q P+  +Q GY Y  ++  + SW    S  H  P  VR + S  G+
Sbjct: 1125 DKKYPFHQMPSQQRQHGYDYGLASERNYSWEKEVSVLHGAPETVRELLSTLGL 1177
tr_hit_id B0ES86
Definition tr|B0ES86|B0ES86_ENTDI Putative uncharacterized protein OS=Entamoeba dispar SAW760
Align length 62
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918740|Adiantum capillus-veneris mRNA, clone:
YMU001_000116_H11.
         (276 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0ES86|B0ES86_ENTDI Putative uncharacterized protein OS=Entam...    39   0.17 
tr|B0END0|B0END0_ENTDI Putative uncharacterized protein OS=Entam...    39   0.17 
tr|B0EJP8|B0EJP8_ENTDI Putative uncharacterized protein OS=Entam...    39   0.17 
tr|B0EC86|B0EC86_ENTDI Putative uncharacterized protein OS=Entam...    36   0.85 
tr|B0E6A1|B0E6A1_ENTDI Putative uncharacterized protein OS=Entam...    36   0.85 
tr|Q4SAR7|Q4SAR7_TETNG Chromosome 3 SCAF14679, whole genome shot...    34   3.2  
tr|Q1N4I9|Q1N4I9_9GAMM Putative uncharacterized protein OS=Ocean...    34   3.2  
tr|Q86A27|Q86A27_DICDI Similar to Plasmodium falciparum. Hypothe...    34   3.2  
tr|Q559G0|Q559G0_DICDI Putative uncharacterized protein OS=Dicty...    34   3.2  
tr|B4JVR6|B4JVR6_DROGR GH22885 OS=Drosophila grimshawi GN=GH2288...    34   4.2  
tr|Q8IBQ3|Q8IBQ3_PLAF7 Putative uncharacterized protein PF07_008...    33   5.5  
tr|A6EAY2|A6EAY2_9SPHI Putative outer membrane protein OS=Pedoba...    33   7.2  
tr|Q3SKV4|Q3SKV4_THIDA TonB-dependent siderophore receptor OS=Th...    33   9.4  

>tr|B0ES86|B0ES86_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_011310 PE=4 SV=1
          Length = 317

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  KEVYSQDPAISKQVGY-GYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVY 247
           K + S+D +    +G+ GYA +NNG      +  +A PPY+   A   G +PS NP +VY
Sbjct: 233 KVLVSEDNSFKPYIGFIGYARNNNG-LVVPNNVPNAQPPYILVGAIDNGSAPSINPETVY 291

Query: 248 DS 253
           D+
Sbjct: 292 DA 293


>tr|B0END0|B0END0_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_010110 PE=4 SV=1
          Length = 320

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  KEVYSQDPAISKQVGY-GYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVY 247
           K + S+D +    +G+ GYA +NNG      +  +A PPY+   A   G +PS NP +VY
Sbjct: 236 KVLVSEDNSFKPYIGFIGYARNNNG-LVVPNNVPNAQPPYILVGAIDNGSAPSINPETVY 294

Query: 248 DS 253
           D+
Sbjct: 295 DA 296


>tr|B0EJP8|B0EJP8_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_120620 PE=4 SV=1
          Length = 317

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  KEVYSQDPAISKQVGY-GYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVY 247
           K + S+D +    +G+ GYA +NNG      +  +A PPY+   A   G +PS NP +VY
Sbjct: 233 KVLVSEDNSFKPYIGFIGYARNNNG-LVVPNNVPNAQPPYILVGAIDNGSAPSINPETVY 291

Query: 248 DS 253
           D+
Sbjct: 292 DA 293


>tr|B0EC86|B0EC86_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_274590 PE=4 SV=1
          Length = 129

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  KEVYSQDPAISKQVGY-GYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVY 247
           K + S+D +    +G+ GYA +NNG      +  +A PPY+   A     +PS NP +VY
Sbjct: 45  KVLVSEDNSFKPYIGFIGYARNNNG-LVVPNNVPNAQPPYILVGAIDNSSAPSINPETVY 103

Query: 248 DS 253
           D+
Sbjct: 104 DA 105


>tr|B0E6A1|B0E6A1_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_316450 PE=4 SV=1
          Length = 317

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  KEVYSQDPAISKQVGY-GYASSNNGDNSWRGHSSHADPPYVRGVASPAGISPSHNPSSVY 247
           K + S+D +    +G+ GYA +NNG      +  +A PPY+   A     +PS NP +VY
Sbjct: 233 KVLVSEDNSFKPYIGFIGYARNNNG-LVVPNNVPNAQPPYILVGAIDNSSAPSINPETVY 291

Query: 248 DS 253
           D+
Sbjct: 292 DA 293


>tr|Q4SAR7|Q4SAR7_TETNG Chromosome 3 SCAF14679, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00021296001 PE=4 SV=1
          Length = 216

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 80  YSQDPAISKQVGYGYASSNNGDNSWRGHSSHADPP-YVRG-VASPAGISPSHNPSSVYDS 253
           Y+Q P+ S   G GY S       + G +SH  PP + RG    P   S     S    S
Sbjct: 77  YNQPPS-SGHSGGGYGSGGGQTGGYGGSASHQQPPQHGRGHYNQPPSYSSPPPQSFSQQS 135

Query: 254 HYGKQYG 274
           HYG+ YG
Sbjct: 136 HYGQGYG 142


>tr|Q1N4I9|Q1N4I9_9GAMM Putative uncharacterized protein
           OS=Oceanobacter sp. RED65 GN=RED65_01725 PE=4 SV=1
          Length = 101

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 188 HMEDLHDLNGLSMNYHHCYYLHSHNLLA 105
           H  D H+ NG +  +HHC + H H+ LA
Sbjct: 35  HSHDQHNANGDAAGHHHCCHAHGHHYLA 62


>tr|Q86A27|Q86A27_DICDI Similar to Plasmodium falciparum. Hypothetical
            220.3 kDa protein OS=Dictyostelium discoideum PE=4 SV=1
          Length = 1197

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +2

Query: 2    DTYELDVKEAYNRDYRNVYTRDVKEVYSQDPAISKQVGYGYASSNNGDNSWRGHSSHADP 181
            D+Y  + +++Y  + R  Y  + +E   +D    +  GYG  ++NN +N+   ++S+   
Sbjct: 1087 DSYGGNQRDSYGGNQRYSYGGNQRETTRRDSFNGRDEGYGNNNNNNNNNNNNNNNSYDSD 1146

Query: 182  PY 187
            PY
Sbjct: 1147 PY 1148


>tr|Q559G0|Q559G0_DICDI Putative uncharacterized protein
            OS=Dictyostelium discoideum GN=DDB_0217051 PE=4 SV=1
          Length = 1212

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +2

Query: 2    DTYELDVKEAYNRDYRNVYTRDVKEVYSQDPAISKQVGYGYASSNNGDNSWRGHSSHADP 181
            D+Y  + +++Y  + R  Y  + +E   +D    +  GYG  ++NN +N+   ++S+   
Sbjct: 1102 DSYGGNQRDSYGGNQRYSYGGNQRETTRRDSFNGRDEGYGNNNNNNNNNNNNNNNSYDSD 1161

Query: 182  PY 187
            PY
Sbjct: 1162 PY 1163


>tr|B4JVR6|B4JVR6_DROGR GH22885 OS=Drosophila grimshawi GN=GH22885
           PE=4 SV=1
          Length = 378

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +2

Query: 8   YELDVKEAYNRDYRNVYTRDVKEVYSQDPAISKQVGYGYASSNNG---DNS 151
           Y  D    YNRD+   Y RD    YS+D   S +    Y   NN    DNS
Sbjct: 305 YSKDYSRDYNRDFSREYNRDYSRDYSRDNNYSSRNYNNYGRDNNSYSRDNS 355