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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918743
Clone id YMU001_000117_A04
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGAAAGGTTTAGACGGATATTTCATCATTCCACCTATCGGGTACTCCTTGGTCATAAGGA
AGCACAGACTCTGAGCAGCTTATATGTTAACGAGCATTGTTTCAAGCAAAGGGTGTGGGT
TATGGGGGCACGTCCGAATGAAGAGGAGATTTTCGAGTTCACTCTGTTGCAGAGAGTTGG
TGGCTGCTGGGATGGCTATTGGTTAACTCAAAGCCTTCGCCATGATGGTGATGGCATCAG
TGGTGGTATAGCTTACTAGTTCGCTATTGAACTAGTTTTGGTGGGTCGTTGTTCTGTACA
TATATTACCGGGGATCGCATCACTTCGTGCTACAAAGGAAGAAGAGAGTATTTGGAGCTG
GCGAGAAGCTTGTACATAGTAGGGATACAGGAGTATAGACATGATCCCCATGGCAATTTG
TAATGTGCGCTATGGCTTCTTGAGCTCTAGGGCTCACCTCCAGGAGTCAAATGTATCATT
GCAGGAAAATCTTCCGGAGTAAATTAGACATTTTGTAAGTTCACCTCATCGATTTATCAA
CTGATGGA
■■Homology search results ■■ -
sp_hit_id Q2S3W3
Definition sp|Q2S3W3|SYR_SALRD Arginyl-tRNA synthetase OS=Salinibacter ruber (strain DSM 13855)
Align length 29
Score (bit) 30.4
E-value 5.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918743|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_A04.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2S3W3|SYR_SALRD Arginyl-tRNA synthetase OS=Salinibacter rube...    30   5.9  

>sp|Q2S3W3|SYR_SALRD Arginyl-tRNA synthetase OS=Salinibacter ruber
           (strain DSM 13855) GN=argS PE=3 SV=1
          Length = 562

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 381 YYVQASRQLQILSSSFVARSDAIPGNICT 295
           YY  A RQ+++L+ S  AR +A+ GN+ T
Sbjct: 162 YYNDAGRQMRVLAQSVRARYEALAGNVPT 190
tr_hit_id A9T6I0
Definition tr|A9T6I0|A9T6I0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 85
Score (bit) 147.0
E-value 4.0e-34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918743|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_A04.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T6I0|A9T6I0_PHYPA Predicted protein OS=Physcomitrella paten...   147   4e-34
tr|B6THC8|B6THC8_MAIZE Putative uncharacterized protein OS=Zea m...   144   3e-33
tr|Q6NM03|Q6NM03_ARATH At2g25605 (Putative uncharacterized prote...   142   2e-32
tr|A7P5K4|A7P5K4_VITVI Chromosome chr4 scaffold_6, whole genome ...   140   6e-32
tr|Q0DFR7|Q0DFR7_ORYSJ Os05g0574700 protein OS=Oryza sativa subs...   134   2e-30
tr|B8AWV6|B8AWV6_ORYSI Putative uncharacterized protein OS=Oryza...   134   2e-30
tr|A5BJE9|A5BJE9_VITVI Putative uncharacterized protein OS=Vitis...   122   9e-27
tr|A3B727|A3B727_ORYSJ Putative uncharacterized protein OS=Oryza...    77   5e-13
tr|A8JI05|A8JI05_CHLRE Predicted protein OS=Chlamydomonas reinha...    64   5e-09
tr|Q7N5Y6|Q7N5Y6_PHOLL Similar to unknown protein OS=Photorhabdu...    35   2.6  
tr|Q3L9Z7|Q3L9Z7_RHOE4 Hypothetical membrane protein OS=Rhodococ...    34   4.4  
tr|Q7U2J4|Q7U2J4_MYCBO PROBABLE CONSERVED TRANSMEMBRANE PROTEIN ...    34   5.8  
tr|P96401|P96401_MYCTU PROBABLE CONSERVED TRANSMEMBRANE PROTEIN ...    34   5.8  
tr|A5TYU4|A5TYU4_MYCTA Putative conserved transmembrane protein ...    34   5.8  
tr|A1KF39|A1KF39_MYCBP Probable conserved transmembrane protein ...    34   5.8  
tr|A4KNP0|A4KNP0_MYCTU Conserved transmembrane protein OS=Mycoba...    34   5.8  
tr|A2VND9|A2VND9_MYCTU Putative uncharacterized protein OS=Mycob...    34   5.8  
tr|A1QMZ6|A1QMZ6_MYCTF Putative uncharacterized protein (Conserv...    34   5.8  
tr|A8RFI9|A8RFI9_9FIRM Putative uncharacterized protein OS=Eubac...    33   7.5  
tr|O29801|O29801_ARCFU Signal-transducing histidine kinase, puta...    33   7.5  

>tr|A9T6I0|A9T6I0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219361 PE=4 SV=1
          Length = 230

 Score =  147 bits (371), Expect = 4e-34
 Identities = 65/85 (76%), Positives = 76/85 (89%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRRIFHH+++RVLL H + + LSSL+VNEHCFKQRV ++GARP EEEI+EFTL QR+G
Sbjct: 146 ERFRRIFHHTSFRVLLNHTDRRILSSLFVNEHCFKQRVCIVGARPGEEEIYEFTLAQRIG 205

Query: 182 GCWDGYWLTQSLRHDGDGISGGIAY 256
           G WDGYWLTQSLRHDG+G SGGIAY
Sbjct: 206 GNWDGYWLTQSLRHDGEGASGGIAY 230


>tr|B6THC8|B6THC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 211

 Score =  144 bits (363), Expect = 3e-33
 Identities = 65/85 (76%), Positives = 75/85 (88%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRR+FHHSTYRVLLGH+E + LSSL+V E+ FKQRVWV GARP EEEIF+FT++QRVG
Sbjct: 127 ERFRRLFHHSTYRVLLGHRERRILSSLWVEENQFKQRVWVQGARPEEEEIFQFTMVQRVG 186

Query: 182 GCWDGYWLTQSLRHDGDGISGGIAY 256
           G WDGYWLT+SL +DGD  SGGIAY
Sbjct: 187 GSWDGYWLTESLINDGDAFSGGIAY 211


>tr|Q6NM03|Q6NM03_ARATH At2g25605 (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At2g25605 PE=2 SV=1
          Length = 200

 Score =  142 bits (357), Expect = 2e-32
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRRIFHHS+YRVLLGHK+ + LSSL+V E+ FKQR+W+ G RP EEEIFEFT+ QR+G
Sbjct: 116 ERFRRIFHHSSYRVLLGHKDRKLLSSLFVEENRFKQRIWIQGNRPEEEEIFEFTMFQRIG 175

Query: 182 GCWDGYWLTQSLRHDGDGISGGIAY 256
           G WDGYWLT+SL HDGD  SGG+AY
Sbjct: 176 GSWDGYWLTESLLHDGDVFSGGMAY 200


>tr|A7P5K4|A7P5K4_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032568001
           PE=4 SV=1
          Length = 200

 Score =  140 bits (352), Expect = 6e-32
 Identities = 62/85 (72%), Positives = 72/85 (84%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRRIFHHS+YRVLL H+E + LSSL+V E+ FKQRVW+ G RP EEEIF+FT+ QRVG
Sbjct: 116 ERFRRIFHHSSYRVLLCHRERKILSSLWVKENRFKQRVWIRGTRPEEEEIFQFTMFQRVG 175

Query: 182 GCWDGYWLTQSLRHDGDGISGGIAY 256
           G WDGYWLT+SL HDGD  SGG+AY
Sbjct: 176 GSWDGYWLTESLLHDGDSFSGGVAY 200


>tr|Q0DFR7|Q0DFR7_ORYSJ Os05g0574700 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0574700 PE=2 SV=1
          Length = 218

 Score =  134 bits (338), Expect = 2e-30
 Identities = 62/86 (72%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRRIFHHSTYRVLL HKE   LSSL+V E+ +KQRVWV G+RP EE IF+FT++QRVG
Sbjct: 133 ERFRRIFHHSTYRVLLAHKERTILSSLWVEENLYKQRVWVRGSRPEEEAIFQFTMVQRVG 192

Query: 182 GCWDGYWLTQSL-RHDGDGISGGIAY 256
           G WDGYWLT+SL   DGD +SGG+AY
Sbjct: 193 GSWDGYWLTESLINDDGDALSGGLAY 218


>tr|B8AWV6|B8AWV6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21087 PE=4 SV=1
          Length = 215

 Score =  134 bits (338), Expect = 2e-30
 Identities = 62/86 (72%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRRIFHHSTYRVLL HKE   LSSL+V E+ +KQRVWV G+RP EE IF+FT++QRVG
Sbjct: 130 ERFRRIFHHSTYRVLLAHKERTILSSLWVEENLYKQRVWVRGSRPEEEAIFQFTMVQRVG 189

Query: 182 GCWDGYWLTQSL-RHDGDGISGGIAY 256
           G WDGYWLT+SL   DGD +SGG+AY
Sbjct: 190 GSWDGYWLTESLINDDGDALSGGLAY 215


>tr|A5BJE9|A5BJE9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004444 PE=4 SV=1
          Length = 166

 Score =  122 bits (307), Expect = 9e-27
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRRIFHHS+YRVLL H+E + LSSL+V E+ FKQRVW+ G RP EEEIF+FT+   V 
Sbjct: 84  ERFRRIFHHSSYRVLLCHRERKILSSLWVKENRFKQRVWIRGTRPEEEEIFQFTIGLVVP 143

Query: 182 GCWDGYWLTQSLRHDGDGISGGIAY 256
             WDGYWLT+SL HDGD  SGG+AY
Sbjct: 144 --WDGYWLTESLLHDGDSFSGGVAY 166


>tr|A3B727|A3B727_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018849 PE=4 SV=1
          Length = 269

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 33/53 (62%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
 Frame = +2

Query: 86  VNEHCFKQRVWVMGARPNEEEIFEFTLLQRVGGCWDGYWLTQSL-RHDGDGIS 241
           + ++ +KQRVWV G+RP EE IF+FT++QRVGG WDGYWLT+SL   DGD +S
Sbjct: 172 LGQNLYKQRVWVRGSRPEEEAIFQFTMVQRVGGSWDGYWLTESLINDDGDALS 224


>tr|A8JI05|A8JI05_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_180553 PE=4 SV=1
          Length = 169

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 31/80 (38%), Positives = 45/80 (56%)
 Frame = +2

Query: 2   ERFRRIFHHSTYRVLLGHKEAQTLSSLYVNEHCFKQRVWVMGARPNEEEIFEFTLLQRVG 181
           ERFRR+ H   +  LL +   + LS+L ++E C+  RV V      EE  +  TL QR+G
Sbjct: 85  ERFRRVMHSPFHATLLDNSGWEVLSTLQLSETCWCARVRVWDTHRLEERAYAITLTQRLG 144

Query: 182 GCWDGYWLTQSLRHDGDGIS 241
           GC+DGYW T     +G  ++
Sbjct: 145 GCYDGYWYTDRWVCEGQDVN 164


>tr|Q7N5Y6|Q7N5Y6_PHOLL Similar to unknown protein OS=Photorhabdus
           luminescens subsp. laumondii GN=plu1793 PE=4 SV=1
          Length = 452

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
 Frame = +2

Query: 35  YRVLLGHKEAQTLSSLYVNEHCF---KQRVWVMGARPNEEEIFEFTLLQRVGGCWD---- 193
           +  ++G +    L     NE C     Q++W+   R  ++E F+F   +R GG W     
Sbjct: 350 FNYVVGIQNLIELKGWSANEDCALKRAQQLWLDPYRCQQDETFKF---EREGGDWKKEIA 406

Query: 194 ---GYWLTQSLRHD 226
               YWL QSL+H+
Sbjct: 407 ADFSYWLNQSLKHE 420