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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918748
Clone id YMU001_000117_A09
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCATAAACGTAGGCATCGTATTGCACAATTAGCGTAAATATACAGATGTCAGTAAGTTTT
TAAAGCTTTGGAACTTTTCCTTTGGGCCACATAATATGTTTACAAGCATGCAAACCCAGC
ATATTGCATCAGGTGATGAGTACAAAGCCTGGAAGCAACCCACTATCCAGCCAATCACCA
GTCGAAGCAACTCTTTATCACACCTTCAATTGCTAGCTGTGCATTGCATGCCTTAGCTAC
ATTAATCATCTAAATAAATCTCCCTCACCTCATGGCAAGCTCAGAAGCATGAAATTTGCT
CAACTCTTTGCAATGGCATCCTCTTAATCAGCCGTGCAGCTCTTTCACCTCTTTGTCTTA
TCCAGAATCTCAATGTACTTCTTTGGTATGCCGTATTGTGAGATCAAGTGCTTCCCAAGA
TCCTCAATGACGCCACCTTGTACAAGAACTTCATATTGACCCTTCTTGCCTGGTACCTCT
GCAACTGACGTGCTGCAAGCAGATTTTTTCTGCAGCTCAT
■■Homology search results ■■ -
sp_hit_id Q58CR3
Definition sp|Q58CR3|LIGA_BOVIN Ligatin OS=Bos taurus
Align length 56
Score (bit) 47.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918748|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_A09.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58CR3|LIGA_BOVIN Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1           47   4e-05
sp|Q5PPG7|LIGA_RAT Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1      47   5e-05
sp|Q61211|LIGA_MOUSE Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3         47   5e-05
sp|Q5RA63|LIGA_PONAB Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1         44   5e-04
sp|P41214|LIGA_HUMAN Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3         44   5e-04
sp|A1DAY1|DENR_NEOFI Translation machinery-associated protein 22...    38   0.025
sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22...    38   0.025
sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22...    37   0.042
sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22...    36   0.12 
sp|P22040|Y415_SYNY3 Uncharacterized ABC transporter ATP-binding...    34   0.36 
sp|Q85WU2|YCF1_PINKO Putative protein ycf1 OS=Pinus koraiensis P...    31   3.0  
sp|O07594|YHDY_BACSU Uncharacterized mscS family protein yhdY OS...    30   8.8  
sp|O66851|MTAD_AQUAE 5-methylthioadenosine/S-adenosylhomocystein...    30   8.8  
sp|Q9FE22|HFR1_ARATH Transcription factor HFR1 OS=Arabidopsis th...    30   9.0  

>sp|Q58CR3|LIGA_BOVIN Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1
          Length = 579

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%)
 Frame = -3

Query: 515 LQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           LQ++   ST+V   PG K   +V +QG  I  LG+ L+ +Y +P+K+I+ L+K  +
Sbjct: 519 LQQRCQASTTVTSAPGLKDSVQVQIQGNQIHHLGRLLLEEYRLPRKHIQGLEKAPK 574


>sp|Q5PPG7|LIGA_RAT Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1
          Length = 570

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -3

Query: 515 LQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           LQ++   ST V+  PG K   +V VQG  I  LG+ L+ +Y +P KYI+ L+K  +
Sbjct: 511 LQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566


>sp|Q61211|LIGA_MOUSE Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3
          Length = 570

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -3

Query: 515 LQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           LQ++   ST V+  PG K   +V VQG  I  LG+ L+ +Y +P KYI+ L+K  +
Sbjct: 511 LQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566


>sp|Q5RA63|LIGA_PONAB Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1
          Length = 584

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = -3

Query: 515 LQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDK 357
           LQ++   ST+V   PG K   +V +QG  +  LG  L+ +Y +P+K+I+ L+K
Sbjct: 524 LQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEK 576


>sp|P41214|LIGA_HUMAN Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3
          Length = 584

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = -3

Query: 515 LQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDK 357
           LQ++   ST+V   PG K   +V +QG  +  LG  L+ +Y +P+K+I+ L+K
Sbjct: 524 LQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEK 576


>sp|A1DAY1|DENR_NEOFI Translation machinery-associated protein 22
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=tma22 PE=3 SV=1
          Length = 194

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYG--IPKKYIEILDKTKR 348
           EL KK A  +SV + P   G  E+ VQG V ED+ + L+  YG  IP+  IE+++  K+
Sbjct: 134 ELGKKFATGSSVTKSPA--GVEEITVQGDVSEDVQEWLLELYGKEIPESNIELVEDKKK 190


>sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22
           OS=Aspergillus fumigatus GN=tma22 PE=3 SV=2
          Length = 194

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYG--IPKKYIEILDKTKR 348
           EL KK A  +SV + P   G  E+ VQG V ED+ + L+  YG  IP+  IE+++  K+
Sbjct: 134 ELGKKFATGSSVTKSPA--GVEEITVQGDVSEDVKEWLLELYGKEIPESNIELVEDKKK 190


>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22
           OS=Aspergillus clavatus GN=tma22 PE=3 SV=1
          Length = 194

 Score = 37.4 bits (85), Expect = 0.042
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYG--IPKKYIEILDKTKR 348
           EL KK A  +SV + P   G  E+ VQG V ED+ + L+  YG  +P+  IE+++  K+
Sbjct: 134 ELGKKFATGSSVTKSPA--GVEEITVQGDVSEDVQEWLLEVYGKELPESNIELVEDKKK 190


>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22
           OS=Coccidioides immitis GN=TMA22 PE=3 SV=1
          Length = 200

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYG--IPKKYIEILDKTKR* 345
           EL KK A  +SV + P   G  E+ VQG V ED+ + L+  +G  +P+  +EI++  K+ 
Sbjct: 138 ELGKKFATGSSVTKNPA--GGEEITVQGDVCEDVLEWLVEVHGKEVPEDNLEIVEDKKKK 195

Query: 344 KS 339
           K+
Sbjct: 196 KA 197


>sp|P22040|Y415_SYNY3 Uncharacterized ABC transporter ATP-binding
           protein sll0415 OS=Synechocystis sp. (strain PCC 6803)
           GN=sll0415 PE=3 SV=2
          Length = 354

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -3

Query: 497 CSTSVAEVPGKKGQYEVLVQGGVIEDLGKHL 405
           CS S+AEV G    YEV+++GG  E LGK+L
Sbjct: 265 CSGSLAEVLGNDEGYEVVLKGGEEEALGKYL 295
tr_hit_id Q6YVX8
Definition tr|Q6YVX8|Q6YVX8_ORYSJ Os02g0557600 protein OS=Oryza sativa subsp. japonica
Align length 57
Score (bit) 97.1
E-value 5.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918748|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_A09.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6YVX8|Q6YVX8_ORYSJ Os02g0557600 protein OS=Oryza sativa subs...    97   5e-19
tr|B8ADX6|B8ADX6_ORYSI Putative uncharacterized protein OS=Oryza...    97   5e-19
tr|A3A812|A3A812_ORYSJ Putative uncharacterized protein OS=Oryza...    97   5e-19
tr|B6U1M3|B6U1M3_MAIZE Ligatin OS=Zea mays PE=2 SV=1                   96   1e-18
tr|A7Q7W8|A7Q7W8_VITVI Chromosome chr18 scaffold_61, whole genom...    92   1e-17
tr|Q9C9H2|Q9C9H2_ARATH Putative uncharacterized protein F26A9.27...    86   8e-16
tr|Q0WUR1|Q0WUR1_ARATH Putative uncharacterized protein At1g7135...    86   8e-16
tr|A8INB8|A8INB8_CHLRE Predicted protein OS=Chlamydomonas reinha...    53   1e-05
tr|B8P6F0|B8P6F0_9APHY Hypothetical eukaryotic translation initi...    50   5e-05
tr|B8P6A7|B8P6A7_9APHY Hypothetical eukaryotic translation initi...    50   7e-05
tr|Q6P1U9|Q6P1U9_XENTR Putative uncharacterized protein MGC76058...    46   0.001
tr|Q0D0T5|Q0D0T5_ASPTN Putative uncharacterized protein OS=Asper...    46   0.001
tr|Q3YAI1|Q3YAI1_MACMU Ligatin (Fragment) OS=Macaca mulatta GN=L...    45   0.002
tr|Q8I375|Q8I375_PLAF7 Putative uncharacterized protein PFI0365w...    45   0.002
tr|Q2UNV2|Q2UNV2_ASPOR Filamentous baseplate protein Ligatin OS=...    45   0.002
tr|B8NID3|B8NID3_ASPFL RNA binding protein Ligatin/Tma64, putati...    45   0.002
tr|A1L106|A1L106_XENLA Lgtn protein OS=Xenopus laevis GN=lgtn PE...    45   0.003
tr|Q6MYM7|Q6MYM7_ASPFU Ligatin-like protein, putative OS=Aspergi...    44   0.004
tr|Q4WSJ3|Q4WSJ3_ASPFU RNA binding protein Ligatin/Tma64, putati...    44   0.004
tr|B0XR29|B0XR29_ASPFC RNA binding protein Ligatin/Tma64, putati...    44   0.004
tr|A1D2G6|A1D2G6_NEOFI RNA binding protein Ligatin/Tma64, putati...    44   0.004
tr|Q7SXY6|Q7SXY6_DANRE Ligatin OS=Danio rerio GN=lgtn PE=2 SV=1        44   0.005
tr|B0UYH2|B0UYH2_DANRE Novel protein similar to H.sapiens LGTN, ...    44   0.005
tr|Q6ZP26|Q6ZP26_HUMAN CDNA FLJ26672 fis, clone MPG03403, highly...    44   0.005
tr|Q1DS38|Q1DS38_COCIM Putative uncharacterized protein OS=Cocci...    44   0.006
tr|A2QR96|A2QR96_ASPNC Similarity: there is another blastp hit t...    44   0.006
tr|A5K6E6|A5K6E6_PLAVI Putative uncharacterized protein OS=Plasm...    42   0.014
tr|B6Q8F2|B6Q8F2_PENMA RNA binding protein Ligatin/Tma64, putati...    42   0.014
tr|B6H3A0|B6H3A0_PENCH Pc13g13080 protein OS=Penicillium chrysog...    42   0.014
tr|Q7RH73|Q7RH73_PLAYO Hepatocellular carcinoma-associated antig...    42   0.018

>tr|Q6YVX8|Q6YVX8_ORYSJ Os02g0557600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0038F20.9 PE=4 SV=1
          Length = 603

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 43/57 (75%), Positives = 52/57 (91%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACST+ AE+PGKKGQ+EVLVQGGVI+DL KHL+  YG+PK++IE+LDKTKR
Sbjct: 547 ELQKKFACSTTTAELPGKKGQHEVLVQGGVIDDLAKHLVDHYGVPKRFIEVLDKTKR 603


>tr|B8ADX6|B8ADX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07662 PE=4 SV=1
          Length = 586

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 43/57 (75%), Positives = 52/57 (91%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACST+ AE+PGKKGQ+EVLVQGGVI+DL KHL+  YG+PK++IE+LDKTKR
Sbjct: 530 ELQKKFACSTTTAELPGKKGQHEVLVQGGVIDDLAKHLVDHYGVPKRFIEVLDKTKR 586


>tr|A3A812|A3A812_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006934 PE=4 SV=1
          Length = 627

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 43/57 (75%), Positives = 52/57 (91%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACST+ AE+PGKKGQ+EVLVQGGVI+DL KHL+  YG+PK++IE+LDKTKR
Sbjct: 571 ELQKKFACSTTTAELPGKKGQHEVLVQGGVIDDLAKHLVDHYGVPKRFIEVLDKTKR 627


>tr|B6U1M3|B6U1M3_MAIZE Ligatin OS=Zea mays PE=2 SV=1
          Length = 601

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 42/57 (73%), Positives = 50/57 (87%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACST+ AE+PGKKGQYE+LVQGGVI+DL KHL+  Y +PK+YIE+ DKTKR
Sbjct: 545 ELQKKFACSTTTAELPGKKGQYEILVQGGVIDDLAKHLVDHYDVPKRYIEVYDKTKR 601


>tr|A7Q7W8|A7Q7W8_VITVI Chromosome chr18 scaffold_61, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032030001
           PE=4 SV=1
          Length = 584

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 45/57 (78%), Positives = 52/57 (91%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACST+VAE+PGKKG +EVLVQGGVIEDL KHL+ QYGIPK+ IE+LDKTK+
Sbjct: 529 ELQKKFACSTTVAELPGKKG-HEVLVQGGVIEDLAKHLVEQYGIPKRCIEVLDKTKK 584


>tr|Q9C9H2|Q9C9H2_ARATH Putative uncharacterized protein F26A9.27
           OS=Arabidopsis thaliana GN=F26A9.27 PE=4 SV=1
          Length = 566

 Score = 86.3 bits (212), Expect = 8e-16
 Identities = 38/57 (66%), Positives = 51/57 (89%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACSTSV E+PGKKG YEVL+QGGVI++L ++++  YG+PK+YIE+LDKT++
Sbjct: 511 ELQKKFACSTSVGELPGKKG-YEVLIQGGVIDNLARYMVEHYGVPKRYIEVLDKTRK 566


>tr|Q0WUR1|Q0WUR1_ARATH Putative uncharacterized protein At1g71350
           OS=Arabidopsis thaliana GN=At1g71350 PE=2 SV=1
          Length = 597

 Score = 86.3 bits (212), Expect = 8e-16
 Identities = 38/57 (66%), Positives = 51/57 (89%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR 348
           ELQKK ACSTSV E+PGKKG YEVL+QGGVI++L ++++  YG+PK+YIE+LDKT++
Sbjct: 542 ELQKKFACSTSVGELPGKKG-YEVLIQGGVIDNLARYMVEHYGVPKRYIEVLDKTRK 597


>tr|A8INB8|A8INB8_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_115084 PE=4 SV=1
          Length = 618

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKY 375
           E Q+K ACSTSV ++PGK    EV++QG   E     L++ YGIPKKY
Sbjct: 565 ECQRKFACSTSVVDLPGKNTGQEVVLQGSFPEKAADFLMTTYGIPKKY 612


>tr|B8P6F0|B8P6F0_9APHY Hypothetical eukaryotic translation
           initiation factor eIF1/SUI1 OS=Postia placenta Mad-698-R
           GN=POSPLDRAFT_127061 PE=4 SV=1
          Length = 470

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR*K 342
           EL+K  A +TSV+ VPGK  + EV+VQG  I+ +   LI++ G+PKK+IE  D T++ K
Sbjct: 412 ELRKLCASATSVSSVPGKPNEAEVMVQGKQIKAVADLLIAK-GVPKKWIESADMTEKKK 469


>tr|B8P6A7|B8P6A7_9APHY Hypothetical eukaryotic translation
           initiation factor eIF1/SUI1 OS=Postia placenta Mad-698-R
           GN=POSPLDRAFT_134956 PE=4 SV=1
          Length = 469

 Score = 50.1 bits (118), Expect = 7e-05
 Identities = 27/59 (45%), Positives = 41/59 (69%)
 Frame = -3

Query: 518 ELQKKSACSTSVAEVPGKKGQYEVLVQGGVIEDLGKHLISQYGIPKKYIEILDKTKR*K 342
           EL+K  A +TSV+ VPGK  + EV+VQG  I+ +   L+++ G+PKK+IE  D T++ K
Sbjct: 412 ELRKLCASATSVSSVPGKPNEAEVMVQGKQIKAVADLLVAK-GVPKKWIESADMTEKKK 469