BP918755
Clone id YMU001_000117_B04
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGAATCTTTAGAATACTGGAGCATCTACCGAGCAGAAGCAGCCTGTTGTCCATTCGTTCA
TACTCCGTAGGTGGAAATGGCACGCATTCTTCTCTCGAGTCGACCCAAGGTGGGCGTCGT
CCTTCTGTATCTTCACCTGCTCCAAAATGTTCAGGTGCGACTGCTTGCTCCTTGCAAGAT
TCATCGATTGAATCCATGTGTGTCGTAGTAGCAGGGATCGGATTCTCCGTAGAAGGAATT
TCAACACTGCTCTCATACCACTGTTATGGACTTGGACATCCCAAGTTGGGAATCTTGTAC
GACCCACGAGAAAATACTTAAAAAAACTTAGCAAAATCAGTTCCGTGCCCAAAGGTATTG
TCCCCAAAGTCTGACGTCCCTTTCGGTATTTATTTTTATATTAATGCTTGAGCAAGGATC
AAAGTCCAAGGGTCCTCTCTGCTCAATGCTCACAAGCTAATCTAAGTGAAAGTGAGACCC
TAGATACAAATTTATAAGCCCATGGCCTTTCAAAAGAAATCTCATGAAAAGCTACATAAT
CCAAAAGCATCACATCCCAAAA
■■Homology search results ■■ -
sp_hit_id O93845
Definition sp|O93845|DPOE_EMENI DNA polymerase epsilon catalytic subunit A OS=Emericella nidulans
Align length 81
Score (bit) 35.8
E-value 0.15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918755|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_B04.
(562 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O93845|DPOE_EMENI DNA polymerase epsilon catalytic subunit A ... 36 0.15
sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=R... 32 2.8
sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subun... 31 3.6
sp|Q5H9L4|TAF7L_HUMAN Transcription initiation factor TFIID subu... 31 4.7
sp|Q8CHQ0|FBX4_MOUSE F-box only protein 4 OS=Mus musculus GN=Fbx... 31 4.8
sp|Q5NRP9|EDN1_ATEAB Endothelin-1 OS=Atelerix albiventris GN=EDN... 31 4.8
sp|B1AY10|NFX1_MOUSE Transcriptional repressor NF-X1 OS=Mus musc... 30 6.2
sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase OS=Helicobacter py... 30 6.3
sp|A9FL08|FMT_SORC5 Methionyl-tRNA formyltransferase OS=Sorangiu... 30 6.3

>sp|O93845|DPOE_EMENI DNA polymerase epsilon catalytic subunit A
OS=Emericella nidulans GN=pol2 PE=3 SV=2
Length = 2207

Score = 35.8 bits (81), Expect = 0.15
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = -3

Query: 254 ESSVEIPSTENPIPATTTHMDSIDES---CKEQAVAPEH-FGAGEDTEGRRPPWVDSREE 87
E E P + IP T + C+++ V PE G+G D+ PW
Sbjct: 2058 EGRFENPGSSLKIPELTCSACCLIRDLDLCRDEDVLPERGSGSGPDSATSSRPW------ 2111

Query: 86 CVPFPPTEYERMDNRLLLLGR 24
C PF TEY+R+ +L+G+
Sbjct: 2112 CCPFCQTEYDRLAQEEMLIGQ 2132


>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus
GN=Ranbp3 PE=1 SV=2
Length = 491

Score = 31.6 bits (70), Expect = 2.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3

Query: 254 ESSVEIPSTENPIPATTTHMDSIDESCKEQAVAPEHFGAGEDTEGR 117
ES+ E + E +P T H S + C+E+ AP+ F G++ R
Sbjct: 149 ESAEETHTLEEKVPQKTPHGTSEEGHCEEEQAAPQAFVFGQNLRDR 194


>sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subunit
3 OS=Xenopus laevis GN=taf3 PE=2 SV=1
Length = 845

Score = 31.2 bits (69), Expect = 3.6
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3

Query: 248 SVEIPSTENPIPATTTHMDSID----ESCKEQAVAPEHFGAGEDTEG 120
+VEIPS + P A T DSID +C EQ P F +G ++EG
Sbjct: 300 NVEIPS-KKPSIADNTIEDSIDAVIARACAEQEPDPFEFSSGSESEG 345


>sp|Q5H9L4|TAF7L_HUMAN Transcription initiation factor TFIID subunit
7-like OS=Homo sapiens GN=TAF7L PE=2 SV=1
Length = 462

Score = 30.8 bits (68), Expect = 4.7
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3

Query: 257 YESSVEIPSTENP-IPATTTHMDSIDESCKEQAVAPEHFGAGED 129
YESS +I E IPA D S + A APE+F G+D
Sbjct: 43 YESSADIAGDEGTQIPADEDTQTDADSSAQAAAQAPENFQEGKD 86


>sp|Q8CHQ0|FBX4_MOUSE F-box only protein 4 OS=Mus musculus GN=Fbxo4
PE=2 SV=1
Length = 385

Score = 30.8 bits (68), Expect = 4.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2

Query: 8 LEYWSIYRAEAACCPFVHTP*VEMARILLSSRPKVGVVLLYLHLL 142
L+Y +Y+ CCP+ R L +SRP GVV +LH L
Sbjct: 135 LDYMEVYKM---CCPYTR-------RALKASRPMYGVVTSFLHSL 169


>sp|Q5NRP9|EDN1_ATEAB Endothelin-1 OS=Atelerix albiventris GN=EDN1
PE=2 SV=1
Length = 202

Score = 30.8 bits (68), Expect = 4.8
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1

Query: 79 GTHSSLESTQGGRRPSVSSP-APKCSGATACSLQDSSIESMCVVVAGIGFSVEGISTLLS 255
G S ES QGG +PS S P P+ S +CS S ++ CV + + ++T
Sbjct: 25 GAELSTESEQGGEQPSPSPPWRPRRSKRCSCS---SLMDKECVYFCHL--DIIWVNTPEH 79

Query: 256 YHCYGLGHP 282
YGLG P
Sbjct: 80 VVPYGLGSP 88


>sp|B1AY10|NFX1_MOUSE Transcriptional repressor NF-X1 OS=Mus
musculus GN=Nfx1 PE=2 SV=1
Length = 1114

Score = 30.4 bits (67), Expect = 6.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3

Query: 227 ENPIPATTTHMDSIDESCKEQAVAPEHFGAGEDTE--GRRPPW 105
EN P +H DS D SC++ V P E +RPPW
Sbjct: 200 ENTRPVAISHTDSSDASCRKPVVDPCVCRRNEQRRYPQKRPPW 242


>sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase OS=Helicobacter
pylori J99 GN=ileS PE=3 SV=1
Length = 920

Score = 30.4 bits (67), Expect = 6.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2

Query: 507 GHGLINLYLGSHFHLD*LVSIEQRGPLD 424
GHG + YLG +HL+ L+S++++G D
Sbjct: 328 GHGEEDYYLGLKYHLEVLMSVDEKGCYD 355


>sp|A9FL08|FMT_SORC5 Methionyl-tRNA formyltransferase OS=Sorangium
cellulosum (strain So ce56) GN=fmt PE=3 SV=1
Length = 311

Score = 30.4 bits (67), Expect = 6.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1

Query: 178 LARSKQSHLNILEQVKIQKDDAHLGSTREKNACHFHLRSMNEWTTGCFCSVD 23
LA + Q H ++K+D + R H H+R M W G F ++D
Sbjct: 187 LAPTPQDHEAATHAALLKKEDGRIRWERSARQIHDHIRGMTSW-PGAFTTID 237


tr_hit_id B7S3R3
Definition tr|B7S3R3|B7S3R3_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 65
Score (bit) 33.9
E-value 6.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918755|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_B04.
(562 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7S3R3|B7S3R3_PHATR Predicted protein OS=Phaeodactylum tricor... 34 6.3
tr|B5DI52|B5DI52_DROPS GA25910 OS=Drosophila pseudoobscura pseud... 33 8.1

>tr|B7S3R3|B7S3R3_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_bd1200 PE=4 SV=1
Length = 1168

Score = 33.9 bits (76), Expect = 6.3
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1

Query: 79 GTHSSLES----TQGGRRPSVSSPAPKCSGATACSLQDSSIESMCVVVAGIGFSVEGIST 246
G S+ES ++GG PSV+ P P+ S +TA + +D IESM + S++
Sbjct: 72 GLEGSIESQRLPSEGGTYPSVAKPNPRRSSSTAVARED--IESMVLPKPNASASIQKGKP 129

Query: 247 LLSYH 261
+L +H
Sbjct: 130 VLFWH 134


>tr|B5DI52|B5DI52_DROPS GA25910 OS=Drosophila pseudoobscura
pseudoobscura GN=GA25910 PE=4 SV=1
Length = 300

Score = 33.5 bits (75), Expect = 8.1
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -3

Query: 254 ESSVEIPSTENPIPATTTHMDSIDESCKEQAVAPEHFGAGEDTEGRRPPWVDSREECVPF 75
+ S+++ S N TTT DS S K+Q + G G DTE W CVP
Sbjct: 4 DESMDVYSHSNENVCTTTEDDSWRNSWKKQRNSSCDSGFGTDTE----DWRKELTGCVPG 59

Query: 74 PPTEYERM 51
PT ++R+
Sbjct: 60 WPTTWQRV 67