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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918772
Clone id YMU001_000117_C10
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTGGCGAAGGCTCCTACAGGGTGTTTGTACAAAGGAAGTCAGAAGAGATCTGGTACGAA
ATGCAGGATCTACATGTGGTGGAGACTTTACCTCAGATGGTAGCCCTTTCAGAGGCCTAC
ATGTAAATATATGAGCAACAAGGTGGTTCCCAATGAGGCGTTGGAAAAATTGAAATTGGG
ACTGAATGTAGTAGCGGCTACAGGCAGTGTGGACGATACGTCCTTGCAGCAAGAAAGACG
TGGTACAGCATTCATAGCGTAACTTCACACACTCACTTGCACCTCTTTTAAAAGGATCAA
CATGATGAGAGCCACCCTTCAACAGCAAAGAGTGCTTGTATATTGGAAGGATGATTTTTT
ATAGAAACATTCAGGCTGGATATGAAGGGGTCTGGCCAAGTGTTTCTGAAGATTTTGTTG
AACTCCGTATTTTGGAAAGTAAAAGGAAAAAGAAAGAAATGCTCAAAAAAACCAGCAACT
TAAGATCCATGTGTGCATGTGTGAGTTGGGTGAACCCATACCATGCTTGAAGGTTGTCGA
TGCAGATTACTC
■■Homology search results ■■ -
sp_hit_id Q5R761
Definition sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii
Align length 51
Score (bit) 55.1
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918772|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_C10.
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS...    55   2e-07
sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS...    55   2e-07
sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS...    55   2e-07
sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Sc...    35   0.19 
sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 O...    33   0.71 
sp|P22736|NR4A1_HUMAN Nuclear receptor subfamily 4 group A membe...    30   6.0  
sp|P51666|NR4A1_CANFA Nuclear receptor subfamily 4 group A membe...    30   6.0  
sp|Q0V8F0|NR4A1_BOVIN Nuclear receptor subfamily 4 group A membe...    30   7.8  
sp|Q8IQG1|MOB2_DROME Mps one binder kinase activator-like 2 OS=D...    30   7.9  

>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2
           OS=Pongo abelii GN=USP39 PE=2 SV=1
          Length = 565

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQGGSQ 153
           P EGSYR+ V       WYE+QDL V + LPQM+ LSEAY+ I++++   +
Sbjct: 509 PSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDNDE 559


>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2
           OS=Mus musculus GN=Usp39 PE=2 SV=2
          Length = 564

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQGGSQ 153
           P EGSYR+ V       WYE+QDL V + LPQM+ LSEAY+ I++++   +
Sbjct: 508 PSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDNDE 558


>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2
           OS=Homo sapiens GN=USP39 PE=1 SV=2
          Length = 565

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQGGSQ 153
           P EGSYR+ V       WYE+QDL V + LPQM+ LSEAY+ I++++   +
Sbjct: 509 PSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDNDE 559


>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10
           OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1
          Length = 502

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 13/42 (30%), Positives = 28/42 (66%)
 Frame = +1

Query: 13  SYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQ 138
           ++R+ ++  S   WY++QDL+V E    M+ L E+++ ++E+
Sbjct: 459 NFRIQIRNPSTNKWYQIQDLYVEEISSDMIRLGESFIQLWER 500


>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12
            OS=Saccharomyces cerevisiae GN=UBP12 PE=1 SV=1
          Length = 1254

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 4    GEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQGGSQ*GVGKIEI 177
            G G Y  +V+  ++  WY   D  V ET P+      AY+  Y ++     G+G  ++
Sbjct: 1065 GGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRHKDGNGLGSSKL 1122


>sp|P22736|NR4A1_HUMAN Nuclear receptor subfamily 4 group A member 1
           OS=Homo sapiens GN=NR4A1 PE=1 SV=1
          Length = 598

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 178 QFQFFQRLIGNHLVAHIFTCRPLKG----LPSEVKSPPHVDPAFRTRSLLTSFVQ 26
           QF  FQ+ +   +V  +     LKG    LPS+ K PP   PA    +LLTS V+
Sbjct: 320 QFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPA----NLLTSLVR 370


>sp|P51666|NR4A1_CANFA Nuclear receptor subfamily 4 group A member 1
           OS=Canis familiaris GN=NR4A1 PE=2 SV=1
          Length = 598

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 178 QFQFFQRLIGNHLVAHIFTCRPLKG----LPSEVKSPPHVDPAFRTRSLLTSFVQ 26
           QF  FQ+ +   +V  +     LKG    LPS+ K PP   PA    +LLTS V+
Sbjct: 320 QFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPA----NLLTSLVR 370


>sp|Q0V8F0|NR4A1_BOVIN Nuclear receptor subfamily 4 group A member 1
           OS=Bos taurus GN=NR4A1 PE=2 SV=1
          Length = 598

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 178 QFQFFQRLIGNHLVAHIFTCRPLKG----LPSEVKSPPHVDPAFRTRSLLTSFVQ 26
           QF  FQ+ +   +V  +     LKG    LPS+ K PP   PA     LLTS V+
Sbjct: 320 QFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPETSPAH----LLTSLVR 370


>sp|Q8IQG1|MOB2_DROME Mps one binder kinase activator-like 2
           OS=Drosophila melanogaster GN=Mob2 PE=1 SV=3
          Length = 566

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 252 NAVPRLSCCKDVSSTLPVAATTFSPNFNFSNASLGTTLLLIYLH 121
           ++VP      D SST P   T  +P  + S++SL +T    +LH
Sbjct: 23  SSVPLADATNDGSSTAPQTPTASTPRPSSSHSSLSSTFAATFLH 66
tr_hit_id A9RFT9
Definition tr|A9RFT9|A9RFT9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918772|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_C10.
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RFT9|A9RFT9_PHYPA Predicted protein (Fragment) OS=Physcomit...    89   2e-16
tr|A7QZY0|A7QZY0_VITVI Chromosome undetermined scaffold_292, who...    89   2e-16
tr|A5BFT1|A5BFT1_VITVI Putative uncharacterized protein OS=Vitis...    89   2e-16
tr|Q69MX3|Q69MX3_ORYSJ Os09g0407900 protein OS=Oryza sativa subs...    88   3e-16
tr|A3BYP6|A3BYP6_ORYSJ Putative uncharacterized protein OS=Oryza...    88   3e-16
tr|A2Z148|A2Z148_ORYSI Putative uncharacterized protein OS=Oryza...    88   3e-16
tr|B4FYP1|B4FYP1_MAIZE Putative uncharacterized protein OS=Zea m...    87   8e-16
tr|Q8W0Z4|Q8W0Z4_ARATH AT4g22410/F7K2_7 OS=Arabidopsis thaliana ...    82   2e-14
tr|O49640|O49640_ARATH Putative uncharacterized protein AT4g2235...    82   2e-14
tr|Q8H148|Q8H148_ARATH Putative uncharacterized protein At4g2229...    81   4e-14
tr|O49634|O49634_ARATH Putative uncharacterized protein AT4g2229...    81   4e-14
tr|B0W4M2|B0W4M2_CULQU Putative uncharacterized protein OS=Culex...    63   9e-09
tr|B4M2Z9|B4M2Z9_DROVI GJ19115 OS=Drosophila virilis GN=GJ19115 ...    63   1e-08
tr|A8J6F8|A8J6F8_CHLRE Predicted protein (Fragment) OS=Chlamydom...    61   5e-08
tr|Q7Q4G1|Q7Q4G1_ANOGA AGAP008381-PA (Fragment) OS=Anopheles gam...    61   5e-08
tr|Q17K27|Q17K27_AEDAE Ubiquitin specific protease 39 and snrnp ...    60   6e-08
tr|B4L5I7|B4L5I7_DROMO GI21733 OS=Drosophila mojavensis GN=GI217...    60   6e-08
tr|B4JWU4|B4JWU4_DROGR GH17820 OS=Drosophila grimshawi GN=GH1782...    60   6e-08
tr|B3MZV5|B3MZV5_DROAN GF19056 OS=Drosophila ananassae GN=GF1905...    59   1e-07
tr|Q9VWP1|Q9VWP1_DROME CG7288 OS=Drosophila melanogaster GN=CG72...    59   2e-07
tr|B5DNL3|B5DNL3_DROPS GA23380 OS=Drosophila pseudoobscura pseud...    59   2e-07
tr|B4PWG5|B4PWG5_DROYA GE17756 OS=Drosophila yakuba GN=GE17756 P...    59   2e-07
tr|B4NUP1|B4NUP1_DROSI GD24862 OS=Drosophila simulans GN=GD24862...    59   2e-07
tr|B4MTF3|B4MTF3_DROWI GK20149 OS=Drosophila willistoni GN=GK201...    59   2e-07
tr|B4I6Y4|B4I6Y4_DROSE GM22925 OS=Drosophila sechellia GN=GM2292...    59   2e-07
tr|B4HB84|B4HB84_DROPE GL21350 (Fragment) OS=Drosophila persimil...    59   2e-07
tr|B3NUP8|B3NUP8_DROER GG19194 OS=Drosophila erecta GN=GG19194 P...    59   2e-07
tr|B8LEB3|B8LEB3_THAPS Predicted protein OS=Thalassiosira pseudo...    59   2e-07
tr|B6LMU8|B6LMU8_BRAFL Putative uncharacterized protein OS=Branc...    59   2e-07
tr|B7P8E0|B7P8E0_IXOSC Ubiquitin specific peptidase, putative OS...    58   4e-07

>tr|A9RFT9|A9RFT9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_21816 PE=4 SV=1
          Length = 450

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQ 141
           PGEGSYRVFVQRKS+E+WYEMQDLHV ETLPQMVALSE YM IYEQQ
Sbjct: 403 PGEGSYRVFVQRKSDEMWYEMQDLHVNETLPQMVALSETYMQIYEQQ 449


>tr|A7QZY0|A7QZY0_VITVI Chromosome undetermined scaffold_292, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010886001 PE=4 SV=1
          Length = 513

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQ 141
           PGEG YRVFVQRKSEE+WYEMQDLHV ETLPQMVALSE YM IYEQQ
Sbjct: 466 PGEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 512


>tr|A5BFT1|A5BFT1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019937 PE=4 SV=1
          Length = 566

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQ 141
           PGEG YRVFVQRKSEE+WYEMQDLHV ETLPQMVALSE YM IYEQQ
Sbjct: 519 PGEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 565


>tr|Q69MX3|Q69MX3_ORYSJ Os09g0407900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1261_A08.56 PE=2 SV=1
          Length = 554

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 42/46 (91%), Positives = 42/46 (91%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQ 138
           PGEG YRVFVQRKSEE WYEMQDLHV ETLPQMVALSEAYM IYEQ
Sbjct: 507 PGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAYMQIYEQ 552


>tr|A3BYP6|A3BYP6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028168 PE=4 SV=1
          Length = 554

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 42/46 (91%), Positives = 42/46 (91%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQ 138
           PGEG YRVFVQRKSEE WYEMQDLHV ETLPQMVALSEAYM IYEQ
Sbjct: 507 PGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAYMQIYEQ 552


>tr|A2Z148|A2Z148_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31320 PE=4 SV=1
          Length = 555

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 42/46 (91%), Positives = 42/46 (91%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQ 138
           PGEG YRVFVQRKSEE WYEMQDLHV ETLPQMVALSEAYM IYEQ
Sbjct: 508 PGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAYMQIYEQ 553


>tr|B4FYP1|B4FYP1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 316

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 41/46 (89%), Positives = 41/46 (89%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQ 138
           PGEG YRVFVQRKSEE WYEMQDLHV ETLPQMVALSE YM IYEQ
Sbjct: 269 PGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSETYMQIYEQ 314


>tr|Q8W0Z4|Q8W0Z4_ARATH AT4g22410/F7K2_7 OS=Arabidopsis thaliana
           GN=At4g22350 PE=2 SV=1
          Length = 510

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQ 141
           P +G +RVFVQRKS+E+WYEMQDLHV ETLPQMV LSEAYM IYEQQ
Sbjct: 462 PEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEAYMQIYEQQ 508


>tr|O49640|O49640_ARATH Putative uncharacterized protein AT4g22350
           OS=Arabidopsis thaliana GN=AT4g22350 PE=2 SV=1
          Length = 477

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQ 141
           P +G +RVFVQRKS+E+WYEMQDLHV ETLPQMV LSEAYM IYEQQ
Sbjct: 429 PEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEAYMQIYEQQ 475


>tr|Q8H148|Q8H148_ARATH Putative uncharacterized protein At4g22290
           (Putative uncharacterized protein At4g22285)
           OS=Arabidopsis thaliana GN=At4g22285 PE=2 SV=1
          Length = 541

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   PGEGSYRVFVQRKSEEIWYEMQDLHVVETLPQMVALSEAYM*IYEQQ 141
           P +G +RVFVQRKS+E+WYEMQDLHV ETLPQMV LSEAYM IYEQ+
Sbjct: 493 PEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEAYMQIYEQE 539