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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918774
Clone id YMU001_000117_C12
Library
Length 309
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCTACCATAGCCATAACAACTAGTACATACAGCCGTGGGTGCACTGCTGTTCCCCAGTA
AACCTCCTTTCTGCAAAACTGCCATAAGCCCTAGGACTACCGTTGCAAATCCCACATAGA
AACCTGTTGTCCCTTTTAACTCCTTTGTTTGCAAAGATGAAGAAGCCGCTTGTAAAACAG
CTCCAGAGGCCATAGCCCTCCGTGACTGTGACATTGATAAATAGGACGGTGAAACCCTGT
AGTTCCGTTTGACCTCTTGCCCATCTGAAGTAATGCTTATTTGGCTCGAAGTGTCTCCAT
TGCTGGGTG
■■Homology search results ■■ -
sp_hit_id Q42059
Definition sp|Q42059|GUN6_ARATH Endoglucanase 6 OS=Arabidopsis thaliana
Align length 55
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918774|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_C12.
         (309 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q42059|GUN6_ARATH Endoglucanase 6 OS=Arabidopsis thaliana GN=...    31   2.2  
sp|Q9BSK4|FEM1A_HUMAN Protein fem-1 homolog A OS=Homo sapiens GN...    31   2.2  
sp|P57783|ESR3_MICUN Estrogen receptor gamma OS=Micropogonias un...    31   2.2  
sp|P39960|BEM2_YEAST GTPase-activating protein BEM2/IPL2 OS=Sacc...    30   2.9  
sp|A4SJ35|TOLB_AERS4 Protein tolB OS=Aeromonas salmonicida (stra...    30   2.9  
sp|Q9P378|YLM2_SCHPO Uncharacterized protein C19B12.02c OS=Schiz...    30   4.9  
sp|P87239|MDJ1_SCHPO DnaJ homolog 1, mitochondrial OS=Schizosacc...    29   6.4  
sp|Q1R6I6|YHBQ_ECOUT UPF0213 protein yhbQ OS=Escherichia coli (s...    29   8.4  
sp|Q8FD94|YHBQ_ECOL6 UPF0213 protein yhbQ OS=Escherichia coli O6...    29   8.4  
sp|Q0TCV4|YHBQ_ECOL5 UPF0213 protein yhbQ OS=Escherichia coli O6...    29   8.4  
sp|A1AG60|YHBQ_ECOK1 UPF0213 protein yhbQ OS=Escherichia coli O1...    29   8.4  
sp|Q8L7I0|GUN19_ARATH Endoglucanase 19 OS=Arabidopsis thaliana G...    29   8.4  
sp|P22010|GRP78_KLULA 78 kDa glucose-regulated protein homolog O...    29   8.4  

>sp|Q42059|GUN6_ARATH Endoglucanase 6 OS=Arabidopsis thaliana
           GN=At1g64390 PE=2 SV=2
          Length = 620

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = -2

Query: 212 VTVTEGYGLWSCFTSGFFIFANKGVKRDNRFLCGICNGSPRAYGSFAERRFTGEQ 48
           VT   GY  W         F+ KG   D   L G   G P AY +FA+RR   EQ
Sbjct: 427 VTCRGGYATW---------FSRKG--SDPNLLTGAIVGGPDAYDNFADRRDNYEQ 470


>sp|Q9BSK4|FEM1A_HUMAN Protein fem-1 homolog A OS=Homo sapiens
           GN=FEM1A PE=1 SV=1
          Length = 669

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
 Frame = -3

Query: 307 PSNGDTSSQI----SITSDGQEVKRNYRVSPSYLSMSQSR----RAMASGAVLQAA---S 161
           PS+ DTS  I    ++ +D    +R  R+    L M QS       M + + L  A   S
Sbjct: 384 PSHPDTSYYIRYRGAVYADSGNFERCIRLWKYALDMQQSNLEPLSPMTASSFLSFAELFS 443

Query: 160 SSLQTKELKGTTGFYVGFATVVLGLMAVLQKG 65
             LQ +  KG+ G  +GFA     LM VL KG
Sbjct: 444 YVLQDRAAKGSLGTQIGFA----DLMGVLTKG 471


>sp|P57783|ESR3_MICUN Estrogen receptor gamma OS=Micropogonias
           undulatus GN=esr3 PE=2 SV=1
          Length = 565

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 194 YGLWSCFTSGFFIFANKGVKRDNRFLCGICN 102
           YG+WSC   G   F  + ++RDN ++C   N
Sbjct: 181 YGVWSC--EGCKAFFKRSIQRDNEYICPATN 209


>sp|P39960|BEM2_YEAST GTPase-activating protein BEM2/IPL2
            OS=Saccharomyces cerevisiae GN=BEM2 PE=1 SV=1
          Length = 2167

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +1

Query: 55   PVNLLSAKLP*ALGLPLQIPHRNLLSLLTPLFAKMKKPLVKQLQRP*PSVTVTLINRTVK 234
            P  + ++KL  +L     I   NLL+ LT LF  +K    KQL RP        +NRT K
Sbjct: 1280 PTRIANSKLQKSLPENFVIETENLLTTLTDLFHGIKSAYQKQLYRP------IGVNRTQK 1333

Query: 235  PCSSV 249
              + +
Sbjct: 1334 RITDI 1338


>sp|A4SJ35|TOLB_AERS4 Protein tolB OS=Aeromonas salmonicida (strain
           A449) GN=tolB PE=3 SV=1
          Length = 441

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -3

Query: 298 GDTSSQISITSDGQEVKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELKGTTGF 119
           G+++   S+T DG+ +    RV   Y     +R+ M SGA+L    S+L         G 
Sbjct: 341 GESNQGASVTPDGKSMVMVTRVQGQYRI---ARQDMESGAMLVLTQSALDESPSVAPNGS 397

Query: 118 YVGFATVVLG 89
            + +AT+  G
Sbjct: 398 MIIYATIYQG 407


>sp|Q9P378|YLM2_SCHPO Uncharacterized protein C19B12.02c
           OS=Schizosaccharomyces pombe GN=SPAC19B12.02c PE=2 SV=1
          Length = 542

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = -3

Query: 304 SNGDTSSQISITSDGQEVKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELKGTT 125
           +    ++ IS+T+D   V RN   S    +MS S  + +  +    +SS+  +K   G +
Sbjct: 464 AGSSATNAISLTADSNAVSRNSSAS----TMSTSYTSGSGSSNSSGSSSNSSSKSSSGAS 519

Query: 124 GF----YVGFATVVLGLMAVL 74
            +     + F +VV+G  AVL
Sbjct: 520 SYNLNMVITFLSVVIGGTAVL 540


>sp|P87239|MDJ1_SCHPO DnaJ homolog 1, mitochondrial
           OS=Schizosaccharomyces pombe GN=mdj1 PE=2 SV=1
          Length = 528

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 27/93 (29%), Positives = 33/93 (35%)
 Frame = -3

Query: 283 QISITSDGQEVKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELKGTTGFYVGFA 104
           + SIT D  E  R  +   SY   S       SG  LQ  S        KGT G  + F 
Sbjct: 214 EASITIDFMEAVRGAKKDLSYSVSSTCSSCHGSG--LQPGSHKSTCFACKGT-GQRLHFI 270

Query: 103 TVVLGLMAVLQKGGLLGNSSAPTAVCTSCYGYG 5
                +       G  G +  P + C SC G G
Sbjct: 271 PPSFHMQTTCDSCGGTGTTIPPNSACRSCMGSG 303


>sp|Q1R6I6|YHBQ_ECOUT UPF0213 protein yhbQ OS=Escherichia coli
           (strain UTI89 / UPEC) GN=yhbQ PE=3 SV=1
          Length = 100

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 253 VKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELK 134
           ++  YRV    L+  Q  R +A GAV     SSLQT E+K
Sbjct: 61  LRAEYRVKQ--LTKRQKERLVAEGAVFAELLSSLQTPEIK 98


>sp|Q8FD94|YHBQ_ECOL6 UPF0213 protein yhbQ OS=Escherichia coli O6
           GN=yhbQ PE=3 SV=1
          Length = 100

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 253 VKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELK 134
           ++  YRV    L+  Q  R +A GAV     SSLQT E+K
Sbjct: 61  LRAEYRVKQ--LTKRQKERLVAEGAVFAELLSSLQTPEIK 98


>sp|Q0TCV4|YHBQ_ECOL5 UPF0213 protein yhbQ OS=Escherichia coli
           O6:K15:H31 (strain 536 / UPEC) GN=yhbQ PE=3 SV=1
          Length = 100

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 253 VKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELK 134
           ++  YRV    L+  Q  R +A GAV     SSLQT E+K
Sbjct: 61  LRAEYRVKQ--LTKRQKERLVAEGAVFAELLSSLQTPEIK 98
tr_hit_id A9U3Q7
Definition tr|A9U3Q7|A9U3Q7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 89
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918774|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_C12.
         (309 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U3Q7|A9U3Q7_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A9T465|A9T465_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9NRQ6|A9NRQ6_PICSI Putative uncharacterized protein OS=Picea...    36   1.1  
tr|B2VCR5|B2VCR5_ERWT9 Iron(III) dicitrate transport protein Fec...    35   2.5  
tr|Q60DD5|Q60DD5_ORYSJ Os03g0435300 protein OS=Oryza sativa subs...    35   2.5  
tr|A3AJF0|A3AJF0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|A2XIB8|A2XIB8_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|Q7SH38|Q7SH38_NEUCR Predicted protein (Putative uncharacteriz...    33   5.5  

>tr|A9U3Q7|A9U3Q7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173503 PE=4 SV=1
          Length = 413

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
 Frame = -3

Query: 256 EVKRNYRVSPSYLSMSQS-----RRAMASGAVLQAASSSLQTKELKGTTGFYVGFATVVL 92
           + KR+ R  P  +S+SQ      RRA++  AV   A   L + +L G  G  + F+   L
Sbjct: 264 DTKRSARCRPPQMSISQGFSSAGRRAVSHTAV--PAGHPLHSVKLPGPMGIVIAFSVAAL 321

Query: 91  GLMAVLQKGGLLGNSSAPTAVCTSCYGYG 5
           GL   ++  G +     P  VC  C GYG
Sbjct: 322 GLKTAVKNQGFM--PGTPQKVCEKCDGYG 348


>tr|A9T465|A9T465_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167957 PE=4 SV=1
          Length = 413

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -3

Query: 247 RNYRVSPSYLSMSQSRRAMASGAVLQ---AASSSLQTKELKGTTGFYVGFATVVLGLMAV 77
           R+ R  P  +S+SQ    +   AV Q   A  + +   ++ G  G  +  A  VLGL   
Sbjct: 268 RSARARPPSMSLSQGLATVGRHAVSQTVGAVGNPVHRAKVPGPIGLMMALAVAVLGLKTA 327

Query: 76  LQKGGLLGNSSAPTAVCTSCYGYG 5
           ++K G L  S  P  +C  C GYG
Sbjct: 328 VEKQGAL--SGTPQKLCEKCDGYG 349


>tr|A9NRQ6|A9NRQ6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 289

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -3

Query: 250 KRNYRVSPSYLSMSQSRRAMASGAVLQAASS--SLQTKELKGTTGFYVGFATVVLGLMAV 77
           +RN R     +S+SQS      G     A    +  +K+  G+ G Y+    +V  L+ +
Sbjct: 144 RRNSRAGNPSMSLSQSLDRPLDGGYTMVAMGPPAALSKQFPGSAGLYMA---LVFALVGI 200

Query: 76  LQKGGLLGNSSAPTAVCTSCYGYG 5
              G  L   S+    CT C GYG
Sbjct: 201 TTAGASLLGLSSSQEECTRCSGYG 224


>tr|B2VCR5|B2VCR5_ERWT9 Iron(III) dicitrate transport protein FecA
           OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
           GN=fecA PE=4 SV=1
          Length = 791

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -3

Query: 259 QEVKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELKGTTGFYVGFATVVLGLMA 80
           Q    NYR++P  L  + ++ A ASG  L   +S  Q K   G  G Y     +  GL A
Sbjct: 46  QNAVANYRIAPGDLDSALNQFATASGIALSVDASVTQGKTSPGLNGNY----PIDQGLNA 101

Query: 79  VLQKGGL----LGNSS 44
           +L   GL    LGN++
Sbjct: 102 LLSGSGLQAKSLGNNA 117


>tr|Q60DD5|Q60DD5_ORYSJ Os03g0435300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0013C14.14 PE=4 SV=1
          Length = 358

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 202 RRAMASGAVLQAASSSLQTKELKGTTGFYVGFATVVLGLMAVLQKGGLLGNSSAPTAVCT 23
           R A +  A   AA + L+  +L G+    +G A  V  L+++L+ GG  G   A TA+  
Sbjct: 144 RSAASPAARENAACTLLRLAQLDGSAAAAIGRAGAVPVLVSLLESGGARGKKDAATALYA 203

Query: 22  SCYG 11
            C G
Sbjct: 204 LCSG 207


>tr|A3AJF0|A3AJF0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010922 PE=4 SV=1
          Length = 357

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 202 RRAMASGAVLQAASSSLQTKELKGTTGFYVGFATVVLGLMAVLQKGGLLGNSSAPTAVCT 23
           R A +  A   AA + L+  +L G+    +G A  V  L+++L+ GG  G   A TA+  
Sbjct: 144 RSAASPAARENAACTLLRLAQLDGSAAAAIGRAGAVPVLVSLLESGGARGKKDAATALYA 203

Query: 22  SCYG 11
            C G
Sbjct: 204 LCSG 207


>tr|A2XIB8|A2XIB8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12179 PE=4 SV=1
          Length = 539

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 202 RRAMASGAVLQAASSSLQTKELKGTTGFYVGFATVVLGLMAVLQKGGLLGNSSAPTAVCT 23
           R A +  A   AA + L+  +L G+    +G A  V  L+++L+ GG  G   A TA+  
Sbjct: 97  RSAASPAARENAACTLLRLAQLDGSAAAAIGRAGAVPVLVSLLESGGARGKKDAATALYA 156

Query: 22  SCYG 11
            C G
Sbjct: 157 LCSG 160



 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -3

Query: 202 RRAMASGAVLQAASSSLQTKELKGTTGFYVGFATVVLGLMAVLQKGGLLGNSSAPTAVCT 23
           R A +  A   AA + L+  +L G+    +G A  V  L+++L+ GG  G   A TA+  
Sbjct: 325 RSAASPAARENAACALLRLAQLDGSAAAAIGRAGAVPVLVSLLESGGARGKKDAATALYA 384

Query: 22  SCYG 11
            C G
Sbjct: 385 LCSG 388


>tr|Q7SH38|Q7SH38_NEUCR Predicted protein (Putative uncharacterized
           protein B12J7.250) OS=Neurospora crassa GN=B12J7.250
           PE=4 SV=1
          Length = 213

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 28/89 (31%), Positives = 39/89 (43%)
 Frame = -3

Query: 307 PSNGDTSSQISITSDGQEVKRNYRVSPSYLSMSQSRRAMASGAVLQAASSSLQTKELKGT 128
           P+ G T  ++ +    +  KR         SM  S R  +S   L + SSS  +  L  T
Sbjct: 120 PTTGPTPEEVLMRKKTERKKRQIEEELRRGSMGSSGRGGSSPVRLGSVSSSTMSGGLGFT 179

Query: 127 TGFYVGFATVVLGLMAVLQKGGLLGNSSA 41
           TG     +TV  G     +KG +LG SSA
Sbjct: 180 TGTGTASSTVGSGSS---RKGSVLGGSSA 205