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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918778
Clone id YMU001_000117_D04
Library
Length 204
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAAATATGGAAAAATGGAAAGAGAGAGTCAGAATTGGTGGATACGCAATTATTGATAT
TGCAGGAAAACAACTACGAGTACAACCGGGAGGATCCACGATGTCGTCATTTCCCCAAAC
TTAAATACACGGGGATCTGACACAAAAGTATCCATGGGTCGAGTCTTGCTTATTCGTGAC
GGATCTAAAATAGATATTGGTTCT
■■Homology search results ■■ -
sp_hit_id Q85FH8
Definition sp|Q85FH8|RK21_ADICA 50S ribosomal protein L21, chloroplastic OS=Adiantum capillus-veneris
Align length 40
Score (bit) 63.2
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918778|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_D04.
         (204 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FH8|RK21_ADICA 50S ribosomal protein L21, chloroplastic OS...    63   2e-21
sp|Q8M9U4|RK21_CHAGL 50S ribosomal protein L21, chloroplastic OS...    32   0.079
sp|Q6YXQ5|RK21_PHYPA 50S ribosomal protein L21, chloroplastic OS...    28   0.081
sp|B0C3C3|RL21_ACAM1 50S ribosomal protein L21 OS=Acaryochloris ...    28   0.16 
sp|Q85AT7|RK21_ANTFO 50S ribosomal protein L21, chloroplastic OS...    29   0.62 
sp|P06387|RK21_MARPO 50S ribosomal protein L21, chloroplastic OS...    28   1.0  
sp|Q5B6H7|CYM1_EMENI Mitochondrial presequence protease OS=Emeri...    31   2.2  
sp|P74266|RL21_SYNY3 50S ribosomal protein L21 OS=Synechocystis ...    28   2.8  
sp|Q8W8W0|RK21_PSINU 50S ribosomal protein L21, chloroplastic OS...    30   4.9  
sp|Q8DMF1|RL21_THEEB 50S ribosomal protein L21 OS=Thermosynechoc...    29   6.4  
sp|P42893|ECE1_RAT Endothelin-converting enzyme 1 OS=Rattus norv...    29   6.4  
sp|P98181|CP1A1_PAGMA Cytochrome P450 1A1 OS=Pagrus major GN=cyp...    29   8.4  
sp|P48128|RK21_CYAPA 50S ribosomal protein L21, cyanelle OS=Cyan...    29   8.4  

>sp|Q85FH8|RK21_ADICA 50S ribosomal protein L21, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl21 PE=2 SV=2
          Length = 127

 Score = 63.2 bits (152), Expect(2) = 2e-21
 Identities = 34/40 (85%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
 Frame = +1

Query: 88  GRIHDVVISP-NLNTRGSDTKVSMGRVLLIRDGSKIDIGS 204
           GR +DV   P NLNTRGSDTKVSMGRVLLIRDGSKIDIGS
Sbjct: 28  GRFYDVRHFPSNLNTRGSDTKVSMGRVLLIRDGSKIDIGS 67



 Score = 59.3 bits (142), Expect(2) = 2e-21
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +2

Query: 8  MEKWKERVRIGGYAIIDIAGKQLRVQPG 91
          MEKWKERVRIGGYAIIDI GKQLRVQPG
Sbjct: 1  MEKWKERVRIGGYAIIDIGGKQLRVQPG 28


>sp|Q8M9U4|RK21_CHAGL 50S ribosomal protein L21, chloroplastic
          OS=Chaetosphaeridium globosum GN=rpl21 PE=3 SV=1
          Length = 121

 Score = 32.0 bits (71), Expect(2) = 0.079
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAIID+ GKQLRV+PG
Sbjct: 4  YAIIDLGGKQLRVEPG 19



 Score = 23.5 bits (49), Expect(2) = 0.079
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 88  GRIHDVVISPNLNT--RGSDTKVSMGRVLLIRDGSKIDIG 201
           GR +D  +  +  +    S+TK+ + RVL+I  G+++  G
Sbjct: 19  GRFYDAHLFSSFKSLLSESNTKIIIFRVLMISHGTEVQFG 58


>sp|Q6YXQ5|RK21_PHYPA 50S ribosomal protein L21, chloroplastic
          OS=Physcomitrella patens GN=rpl21 PE=3 SV=1
          Length = 114

 Score = 27.7 bits (60), Expect(2) = 0.081
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAII+  G+QLRV+PG
Sbjct: 2  YAIIETGGEQLRVEPG 17



 Score = 27.7 bits (60), Expect(2) = 0.081
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = +1

Query: 88  GRIHDVVISPNLNTRG--SDTKVSMGRVLLIRDGSKIDIG 201
           GR +D+    +L ++   S+TK+ + RVL+IR+ + I+IG
Sbjct: 17  GRFYDIRHFASLKSKNLSSNTKILIYRVLMIRNETTINIG 56


>sp|B0C3C3|RL21_ACAM1 50S ribosomal protein L21 OS=Acaryochloris
           marina (strain MBIC 11017) GN=rplU PE=3 SV=1
          Length = 136

 Score = 27.7 bits (60), Expect(2) = 0.16
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 139 DTKVSMGRVLLIRDGSKIDIG 201
           DTK+S+ +VLL+ DG++  +G
Sbjct: 31  DTKLSLNQVLLVHDGNEATVG 51



 Score = 26.6 bits (57), Expect(2) = 0.16
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          +AII+  GKQL+V+PG
Sbjct: 3  FAIIETGGKQLKVEPG 18


>sp|Q85AT7|RK21_ANTFO 50S ribosomal protein L21, chloroplastic
          OS=Anthoceros formosae GN=rpl21 PE=2 SV=1
          Length = 118

 Score = 29.3 bits (64), Expect(2) = 0.62
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAIID  G+QLRV+PG
Sbjct: 4  YAIIDTGGEQLRVEPG 19



 Score = 23.1 bits (48), Expect(2) = 0.62
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 97  HDVVISPNLNTRGSDTKVSMGRVLLIRDGSKIDIG 201
           H  +++P++    S+TKV + RVL+I   S I +G
Sbjct: 26  HFTLLNPSI--LDSNTKVLIYRVLMIHHESNIALG 58


>sp|P06387|RK21_MARPO 50S ribosomal protein L21, chloroplastic
          OS=Marchantia polymorpha GN=rpl21 PE=3 SV=1
          Length = 116

 Score = 27.7 bits (60), Expect(2) = 1.0
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAII+  G+QLRV+PG
Sbjct: 4  YAIIETGGQQLRVEPG 19



 Score = 23.9 bits (50), Expect(2) = 1.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 97  HDVVISPNLNTRGSDTKVSMGRVLLIRDGSKIDIG 201
           H V ++PN      +TK+ + RVL+IR  S I +G
Sbjct: 26  HFVSLTPN--ELEQNTKILIYRVLMIRQESTIKMG 58


>sp|Q5B6H7|CYM1_EMENI Mitochondrial presequence protease
           OS=Emericella nidulans GN=cym1 PE=3 SV=1
          Length = 1049

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 200 PISILDPSRISKTRPMDTFVSDPRVFKFGEMTTSW 96
           PI +  P  ++   P+DTFVS+ R FK    +TSW
Sbjct: 313 PIELRGPINVTVPGPIDTFVSEDRQFK---TSTSW 344


>sp|P74266|RL21_SYNY3 50S ribosomal protein L21 OS=Synechocystis
          sp. (strain PCC 6803) GN=rplU PE=3 SV=1
          Length = 124

 Score = 28.1 bits (61), Expect(2) = 2.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAII+I G Q+RV+PG
Sbjct: 3  YAIIEIGGTQIRVEPG 18



 Score = 21.9 bits (45), Expect(2) = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 88  GRIHDVVISPNLNTRGSDTKVSMGRVLLIRDGSKIDIG 201
           GR +++    +L+    D+ V + +VLL++DG  + IG
Sbjct: 18  GRFYEI---NHLDAAPEDSYV-VDKVLLVKDGDNVTIG 51


>sp|Q8W8W0|RK21_PSINU 50S ribosomal protein L21, chloroplastic
          OS=Psilotum nudum GN=rpl21 PE=3 SV=2
          Length = 118

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 35 IGGYAIIDIAGKQLRVQPG 91
          +G YAII+  G+QLRV+PG
Sbjct: 1  MGTYAIIETGGEQLRVEPG 19


>sp|Q8DMF1|RL21_THEEB 50S ribosomal protein L21
          OS=Thermosynechococcus elongatus (strain BP-1) GN=rplU
          PE=3 SV=1
          Length = 111

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAII+  GKQLRV+PG
Sbjct: 3  YAIIETGGKQLRVEPG 18
tr_hit_id A2T380
Definition tr|A2T380|A2T380_ANGEV 50S ribosomal protein L21 OS=Angiopteris evecta
Align length 16
Score (bit) 29.3
E-value 0.87
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918778|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_D04.
         (204 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2T380|A2T380_ANGEV 50S ribosomal protein L21 OS=Angiopteris ...    29   0.87 
tr|B8HUY7|B8HUY7_9CHRO Ribosomal protein L21 OS=Cyanothece sp. P...    27   5.1  

>tr|A2T380|A2T380_ANGEV 50S ribosomal protein L21 OS=Angiopteris
          evecta GN=rpl21 PE=3 SV=1
          Length = 116

 Score = 29.3 bits (64), Expect(2) = 0.87
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAIID  G+QLRV+PG
Sbjct: 4  YAIIDTGGEQLRVEPG 19



 Score = 26.2 bits (56), Expect(2) = 0.87
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 88  GRIHDVVISPNLNTR--GSDTKVSMGRVLLIRDGSKIDIG 201
           GR +DV  S +L  +    +TK+ + R+LLI + S I++G
Sbjct: 19  GRFYDVRYSASLKPKILAPNTKILIYRILLICNESTINLG 58


>tr|B8HUY7|B8HUY7_9CHRO Ribosomal protein L21 OS=Cyanothece sp.
          PCC 7425 GN=Cyan7425_0646 PE=4 SV=1
          Length = 130

 Score = 27.3 bits (59), Expect(2) = 5.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 44 YAIIDIAGKQLRVQPG 91
          YAI+  AGKQ RV+PG
Sbjct: 3  YAIVATAGKQFRVEPG 18



 Score = 25.4 bits (54), Expect(2) = 5.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  GRIHDVVISPNLNTRGSDTKVSMGRVLLIRDGSKIDIG 201
           GR +DV     +N     T VS+ +VLL+ DG  I +G
Sbjct: 18  GRFYDV---DRMNVEPEQT-VSLDQVLLVHDGDTIAVG 51