BP918783
Clone id YMU001_000117_D09
Library
Length 283
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATTCGCGGCCGCGAATATTTTTTTGACTGGTTCTACCCCATTAAAAGAGCTAATCCCTCT
CTATTAATGAGGCCCCCCACTCTTTAAACCATGTACTTACCTTGGGAACCTCTCTTCTCT
CAAGTGGATGCCTATTTAAACCCTCTCACTCCTCTTGTATGGTTAACACCACTGAAGAGC
TTATAGCGAAACGCGTGTGGTGTTTAACCAATATTTTGCAAGATCTCCTCCCCCTTCCCC
ACTTCTCTACACGCTAGAGAACTTCCTCCTCTCTCTCCCCCCT
■■Homology search results ■■ -
sp_hit_id Q83TH3
Definition sp|Q83TH3|RECA_LISWE Protein recA OS=Listeria welshimeri
Align length 43
Score (bit) 28.9
E-value 8.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918783|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_D09.
(259 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q83TH3|RECA_LISWE Protein recA OS=Listeria welshimeri GN=recA... 29 8.2
sp|A0AIK0|RECA_LISW6 Protein recA OS=Listeria welshimeri serovar... 29 8.2

>sp|Q83TH3|RECA_LISWE Protein recA OS=Listeria welshimeri GN=recA
PE=3 SV=1
Length = 348

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1

Query: 214 GRGRRSCKILVKHHTRFAISSSVVLTIQEE*EGLNRHPLERRE 86
G+GR + K +K HT S + + E +G N+ PLE E
Sbjct: 297 GQGRENAKQYLKEHTDIRDEISQRVREEYEIDGANKEPLEETE 339


>sp|A0AIK0|RECA_LISW6 Protein recA OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=recA PE=3
SV=1
Length = 348

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1

Query: 214 GRGRRSCKILVKHHTRFAISSSVVLTIQEE*EGLNRHPLERRE 86
G+GR + K +K HT S + + E +G N+ PLE E
Sbjct: 297 GQGRENAKQYLKEHTDIRDEISQRVREEYEIDGANKEPLEETE 339


tr_hit_id A3EYA5
Definition tr|A3EYA5|A3EYA5_9HEXA Homeodomain transcription factor Hox3 OS=Folsomia candida
Align length 33
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918783|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_D09.
(259 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3EYA5|A3EYA5_9HEXA Homeodomain transcription factor Hox3 OS=... 33 9.3

>tr|A3EYA5|A3EYA5_9HEXA Homeodomain transcription factor Hox3
OS=Folsomia candida PE=2 SV=1
Length = 534

Score = 32.7 bits (73), Expect = 9.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2

Query: 161 SETRVVFNQYFARSPPPSPLLYTLENFLLSLPP 259
S+ R++ +Q+ PPPSP N L S+PP
Sbjct: 8 SDNRIIHHQHHVNVPPPSPTSVIKNNVLSSMPP 40