BP918785
Clone id YMU001_000117_D11
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCCGCAATCATGGTATCCAACCGACGACATTTTGGAAAGTAAACTCCTCAAGCACTCCTT
GCTTTTTGAAGCGCACCACACTTGGCGTACATATCAAGCGAAGCATTGCTAAGCTCGACA
TGTTTCTCCAATAGCTCTGTTTTTCCAATGACTCCTGCAACGATCAATGTTTCCTTGCAA
CTCCAAGCGGGTGCTTAGCATTAATTCCTTCATAATCCATCATCCTCGGCCGTGTCTAGC
AAATGTAATGGGATGGCAACAAATGCCAACGGAAAAGAACAGACTACACAGACTTTAGAC
ACTTCAAGACAACTAAGTTGAAAGAGAGACTTCACACAAGACATGGAGTACGTAGTTCCA
CTCCCAAAATGTCAAGCAAATGGTTCTCCTCGTTGTGAAAGAGTGGATCTCCAGCTCCAT
GCTTCCAAATGCTTCTAGTATTACTTGTCTGCAAAAAGCACCAATGCTCCAGAAACCCTA
ATTTACTGTTACAAACCCTAATTTTTCATAAATTGTCGGGTCAAAATCCGCTCGT
■■Homology search results ■■ -
sp_hit_id P0C899
Definition sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana
Align length 35
Score (bit) 34.7
E-value 0.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918785|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_D11.
(535 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containi... 35 0.30
sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei... 35 0.30
sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protei... 34 0.39
sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protei... 34 0.39
sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protei... 33 0.86
sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containi... 33 1.1
sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protei... 33 1.1
sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protei... 33 1.1
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi... 32 1.5
sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protei... 32 1.9
sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protei... 32 1.9
sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protei... 32 2.5
sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protei... 32 2.5
sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protei... 32 2.5
sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protei... 32 2.5
sp|Q8DU98|PPNK_STRMU Probable inorganic polyphosphate/ATP-NAD ki... 31 3.3
sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protei... 31 3.3
sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containi... 31 4.3
sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protei... 31 4.3
sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protei... 31 4.3
sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protei... 31 4.3
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 31 4.3
sp|Q95JL6|CCD38_MACFA Coiled-coil domain-containing protein 38 O... 31 4.3
sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protei... 30 5.6
sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protei... 30 5.6
sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protei... 30 5.6
sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protei... 30 5.6
sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protei... 30 5.6
sp|Q6ZRF7|ZN818_HUMAN Putative zinc finger protein 818 OS=Homo s... 30 5.7
sp|P58003|SESN1_XENLA Sestrin-1 OS=Xenopus laevis GN=sesn1 PE=2 ... 30 7.3

>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing
protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77
PE=3 SV=1
Length = 686

Score = 34.7 bits (78), Expect = 0.30
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3

Query: 161 VAGVIGKTELLEKHVELSNASLDMYAKCGALQKAR 57
+ G I + +L+ ++ L NA +DMYAKCG L+KAR
Sbjct: 331 IHGYIERKKLIP-NLLLENALIDMYAKCGCLEKAR 364


>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein
At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1
Length = 697

Score = 34.7 bits (78), Expect = 0.30
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3

Query: 161 VAGVIGKTELLEKHVELSNASLDMYAKCGALQKAR 57
V G + K + L + LSNA +DMYAKC +++AR
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEAR 309


>sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein
At4g31070, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E7 PE=2 SV=2
Length = 624

Score = 34.3 bits (77), Expect = 0.39
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -3

Query: 122 HVELSNASLDMYAKCGALQKAR 57
H+ L NA +DMYAKCG+L AR
Sbjct: 398 HILLGNALIDMYAKCGSLSAAR 419


>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E88 PE=2 SV=1
Length = 1028

Score = 34.3 bits (77), Expect = 0.39
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -3

Query: 131 LEKHVELSNASLDMYAKCGALQKAR 57
L K++ + NA +DMYAKCGAL+ AR
Sbjct: 459 LAKNLFVGNALVDMYAKCGALEDAR 483


>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein
At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555

Score = 33.1 bits (74), Expect = 0.86
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3

Query: 131 LEKHVELSNASLDMYAKCGALQKAR 57
L+K V++ A LDMY+KCG ++KA+
Sbjct: 305 LDKKVKVCTAILDMYSKCGEIEKAK 329


>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing
protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64
PE=3 SV=1
Length = 611

Score = 32.7 bits (73), Expect = 1.1
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -3

Query: 125 KHVELSNASLDMYAKCGALQKARSA*G 45
K+VEL+NA +DMYAKCG + ++ G
Sbjct: 346 KNVELANALIDMYAKCGNIPDSQRVFG 372


>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein
At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809

Score = 32.7 bits (73), Expect = 1.1
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = -3

Query: 161 VAGVIGKTELLEKHVELSNASLDMYAKCGALQKAR 57
+ GV+ ++ L+K+V ++ A +DMYAKCGA+ AR
Sbjct: 460 IHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIAR 493



Score = 31.6 bits (70), Expect = 2.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3

Query: 119 VELSNASLDMYAKCGALQKAR 57
V +S A +DMYAKCG+L+ AR
Sbjct: 271 VNISTALVDMYAKCGSLETAR 291


>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E98 PE=2 SV=2
Length = 775

Score = 32.7 bits (73), Expect = 1.1
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -3

Query: 128 EKHVELSNASLDMYAKCGALQKAR 57
E ++ LS A +DMYAKCG L+K+R
Sbjct: 565 EMNLSLSAALIDMYAKCGHLEKSR 588


>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing
protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52
PE=3 SV=1
Length = 623

Score = 32.3 bits (72), Expect = 1.5
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -3

Query: 122 HVELSNASLDMYAKCGALQKARS 54
+V +SNAS+ MYA+CG L KAR+
Sbjct: 291 NVFVSNASISMYARCGNLAKARA 313


>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein
At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570

Score = 32.0 bits (71), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3

Query: 128 EKHVELSNASLDMYAKCGALQKARS 54
E V + NA +DM+ KCG L KAR+
Sbjct: 179 EMSVRIGNALVDMFCKCGCLDKARA 203


tr_hit_id A7P0D1
Definition tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera
Align length 24
Score (bit) 34.7
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918785|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_D11.
(535 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome ... 35 3.2
tr|A5BJ29|A5BJ29_VITVI Putative uncharacterized protein OS=Vitis... 35 3.2
tr|Q2QZT2|Q2QZT2_ORYSJ Os11g0673000 protein OS=Oryza sativa subs... 34 4.1
tr|A7QTS4|A7QTS4_VITVI Chromosome undetermined scaffold_171, who... 34 4.1
tr|A7PWD6|A7PWD6_VITVI Chromosome chr8 scaffold_34, whole genome... 34 4.1
tr|A3BAH6|A3BAH6_ORYSJ Putative uncharacterized protein OS=Oryza... 34 4.1
tr|A2ZGU1|A2ZGU1_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.1
tr|B4FYX7|B4FYX7_MAIZE Putative uncharacterized protein OS=Zea m... 34 5.4
tr|A7P5R6|A7P5R6_VITVI Chromosome chr4 scaffold_6, whole genome ... 34 5.4
tr|A4QZA7|A4QZA7_MAGGR Predicted protein OS=Magnaporthe grisea G... 34 5.5
tr|Q7FAQ9|Q7FAQ9_ORYSA OSJNBb0004A17.12 protein OS=Oryza sativa ... 33 7.0
tr|Q259A5|Q259A5_ORYSA H0322F07.4 protein OS=Oryza sativa GN=H03... 33 7.0
tr|Q1KUN7|Q1KUN7_9ROSI Putative uncharacterized protein OS=Cleom... 33 7.0
tr|Q0J946|Q0J946_ORYSJ Os04g0672700 protein OS=Oryza sativa subs... 33 7.0
tr|A9T480|A9T480_PHYPA Predicted protein (Fragment) OS=Physcomit... 33 7.0
tr|A2XYU8|A2XYU8_ORYSI Putative uncharacterized protein OS=Oryza... 33 7.0
tr|Q8S7V8|Q8S7V8_ORYSJ cDNA, clone: J090081F08, full insert sequ... 33 9.2
tr|Q6ZH58|Q6ZH58_ORYSJ cDNA clone:J023139G21, full insert sequen... 33 9.2
tr|Q6ZH57|Q6ZH57_ORYSJ Pentatricopeptide (PPR) repeat-containing... 33 9.2
tr|Q6Z996|Q6Z996_ORYSJ Putative pentatricopeptide (PPR) repeat-c... 33 9.2
tr|Q0J729|Q0J729_ORYSJ Os08g0238100 protein OS=Oryza sativa subs... 33 9.2
tr|Q0DX78|Q0DX78_ORYSJ Os02g0769900 protein (Fragment) OS=Oryza ... 33 9.2
tr|B8AG74|B8AG74_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A7QLP0|A7QLP0_VITVI Chromosome chr13 scaffold_120, whole geno... 33 9.2
tr|A7PDX6|A7PDX6_VITVI Chromosome chr11 scaffold_13, whole genom... 33 9.2
tr|A7NY29|A7NY29_VITVI Chromosome chr6 scaffold_3, whole genome ... 33 9.2
tr|A7NXL2|A7NXL2_VITVI Chromosome chr5 scaffold_2, whole genome ... 33 9.2
tr|A5AU23|A5AU23_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2
tr|A3BQZ2|A3BQZ2_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A3ABR7|A3ABR7_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.2

>tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024861001
PE=4 SV=1
Length = 576

Score = 34.7 bits (78), Expect = 3.2
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3

Query: 131 LEKHVELSNASLDMYAKCGALQKA 60
L K V L+NA +DMYAKCG ++KA
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKA 325


>tr|A5BJ29|A5BJ29_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041201 PE=4 SV=1
Length = 576

Score = 34.7 bits (78), Expect = 3.2
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3

Query: 131 LEKHVELSNASLDMYAKCGALQKA 60
L K V L+NA +DMYAKCG ++KA
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKA 325


>tr|Q2QZT2|Q2QZT2_ORYSJ Os11g0673000 protein OS=Oryza sativa subsp.
japonica GN=Os11g0673000 PE=4 SV=1
Length = 515

Score = 34.3 bits (77), Expect = 4.1
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3

Query: 143 KTELLEKHVELSNASLDMYAKCGALQKAR 57
K+ LL++ V ++NA +DMY KCG + AR
Sbjct: 289 KSGLLDRKVHVANAVMDMYCKCGDVHSAR 317


>tr|A7QTS4|A7QTS4_VITVI Chromosome undetermined scaffold_171, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00006467001 PE=4 SV=1
Length = 676

Score = 34.3 bits (77), Expect = 4.1
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -3

Query: 134 LLEKHVELSNASLDMYAKCGALQKAR 57
LL+ ++ L NA +DMYAKCG L+ AR
Sbjct: 334 LLQPNLLLENALIDMYAKCGCLEYAR 359


>tr|A7PWD6|A7PWD6_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025570001
PE=4 SV=1
Length = 564

Score = 34.3 bits (77), Expect = 4.1
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = -3

Query: 137 ELLEKHVELSNASLDMYAKCGALQKAR 57
+L+E +ELS A ++MYAKCG +++A+
Sbjct: 222 QLIETDLELSTALVNMYAKCGCIERAK 248


>tr|A3BAH6|A3BAH6_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_020048 PE=4 SV=1
Length = 334

Score = 34.3 bits (77), Expect = 4.1
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3

Query: 143 KTELLEKHVELSNASLDMYAKCGALQKAR 57
K+ LL++ V ++NA +DMY KCG + AR
Sbjct: 108 KSGLLDRKVHVANAVMDMYCKCGDVHSAR 136


>tr|A2ZGU1|A2ZGU1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_36997 PE=4 SV=1
Length = 515

Score = 34.3 bits (77), Expect = 4.1
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3

Query: 143 KTELLEKHVELSNASLDMYAKCGALQKAR 57
K+ LL++ V ++NA +DMY KCG + AR
Sbjct: 289 KSGLLDRKVHVANAVMDMYCKCGDVHSAR 317


>tr|B4FYX7|B4FYX7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 583

Score = 33.9 bits (76), Expect = 5.4
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -3

Query: 131 LEKHVELSNASLDMYAKCGALQKAR 57
L K+V + NA +DMY KCG+L+ AR
Sbjct: 170 LGKYVAVKNALIDMYGKCGSLEDAR 194


>tr|A7P5R6|A7P5R6_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032631001
PE=4 SV=1
Length = 484

Score = 33.9 bits (76), Expect = 5.4
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3

Query: 137 ELLEKHVELSNASLDMYAKCGALQKA 60
E + K VELSNA +DM+AKCG + KA
Sbjct: 141 ERVLKTVELSNALVDMFAKCGDVDKA 166


>tr|A4QZA7|A4QZA7_MAGGR Predicted protein OS=Magnaporthe grisea
GN=MGG_07905 PE=4 SV=1
Length = 1973

Score = 33.9 bits (76), Expect = 5.5
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1

Query: 226 SAVSSKCNGMATNANGKEQTTQTLDTSRQLS*KRDFTQDMEYVVPLPKCQANGSPRCERV 405
+A S+K T+ K ++ T+D S Q ++D D+E P K + NG+P E
Sbjct: 913 TAGSAKGKDATTSTPEKPKSANTVDDSTQK--RKDVDSDLEKETPARKKRRNGAPETEAS 970

Query: 406 DLQLHASKCF*YYLSAKSTNAPET 477
L A LS+ ST AP+T
Sbjct: 971 VLPAKAPNL--AGLSSDSTVAPKT 992