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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918791
Clone id YMU001_000117_E05
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTGAACGTAAGGCTTTCAGCAGTTGTGCTAACGCAGCATTCCTCTTTTGAAGTTGGCAT
GTACTTCTCTTCAGTTGGTAGTAGACAAACCTCAAACCCACAAGGCTTCATACCAAACAG
ATTGCCACCTCATGGTCTTGGGCAAGTCCCTTCACCAACATCACCCATTCCATAAAAGAA
TCAAAGCACGGATCGCATTTCTCATCTGTTAAAGCCATACACCCATCCATCTCTTGAATA
GTCTCATAATTACAGATAATAATGGACTTGTAATGCAAACCATCAGAAGCATTTCCATGG
TAGGAATGAGCCTAGAACATTGATAGCTAGAAGCCAAGAAGCACCAGATGACTGAACATT
CTGGTAACAATATATCACATTCTGGAATCAATATATCAGACTCTCACTCTTCCCTTCTTC
AAATGTGCGCACACAGTTTTGCAAAAGATTTTCCCACTGAAAATTATTTGCAACCAATAA
TTCAGGTAATTGTAGTGGCAACAGACCCTGCTTGACTTGTCCCAAGTATCTTGA
■■Homology search results ■■ -
sp_hit_id Q09G56
Definition sp|Q09G56|RPOC2_PLAOC DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis
Align length 43
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918791|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_E05.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09G56|RPOC2_PLAOC DNA-directed RNA polymerase subunit beta''...    33   1.1  
sp|Q56P11|RPOC2_LACSA DNA-directed RNA polymerase subunit beta''...    33   1.1  
sp|Q1KXX0|RPOC2_HELAN DNA-directed RNA polymerase subunit beta''...    33   1.1  
sp|B2LMI2|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta''...    33   1.1  
sp|Q9ZDR8|CTAA_RICPR Heme A synthase OS=Rickettsia prowazekii GN...    33   1.1  
sp|Q09FX1|RPOC2_NANDO DNA-directed RNA polymerase subunit beta''...    32   1.5  
sp|A4QJS3|RPOC2_OLIPU DNA-directed RNA polymerase subunit beta''...    32   1.9  
sp|Q7Z2Z1|CO042_HUMAN Uncharacterized protein C15orf42 OS=Homo s...    32   1.9  
sp|P34225|YBG0_YEAST PH and SEC7 domain-containing protein YBL06...    32   2.5  
sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|A4QLS3|RPOC2_NASOF DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|B1A925|RPOC2_CARPA DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|A4QKI2|RPOC2_CAPBU DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|A6MM26|RPOC2_BUXMI DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|A4QK95|RPOC2_BARVE DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|P56764|RPOC2_ARATH DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|A4QJI9|RPOC2_AETGR DNA-directed RNA polymerase subunit beta''...    31   3.3  
sp|A4QLI4|RPOC2_LOBMA DNA-directed RNA polymerase subunit beta''...    31   4.3  
sp|A4QJA5|RPOC2_AETCO DNA-directed RNA polymerase subunit beta''...    31   4.3  
sp|A1XGM8|RPOC2_RANMC DNA-directed RNA polymerase subunit beta''...    30   5.6  
sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Hom...    30   5.6  
sp|Q9ZQH1|CML48_ARATH Probable calcium-binding protein CML48 OS=...    30   5.6  
sp|A4QK08|RPOC2_ARAHI DNA-directed RNA polymerase subunit beta''...    30   7.3  
sp|P43553|ALR2_YEAST Magnesium transporter ALR2 OS=Saccharomyces...    30   7.3  
sp|Q04311|YD049_YEAST Zinc finger protein YDR049W OS=Saccharomyc...    30   9.5  
sp|P00534|ERBB_ALV Tyrosine-protein kinase transforming protein ...    30   9.5  

>sp|Q09G56|RPOC2_PLAOC DNA-directed RNA polymerase subunit beta''
            OS=Platanus occidentalis GN=rpoC2 PE=3 SV=1
          Length = 1387

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            H++Y      II  G+ FC+ VC      HLK G+V + ++DS
Sbjct: 1055 HHDYCEETSTIISLGQFFCENVCISKKGPHLKSGQVLIVHVDS 1097


>sp|Q56P11|RPOC2_LACSA DNA-directed RNA polymerase subunit beta''
            OS=Lactuca sativa GN=rpoC2 PE=3 SV=2
          Length = 1381

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            HYNY      I+  G+  C+ VC      HLK G+V +  +DS
Sbjct: 1053 HYNYCEETSPIVSLGQFLCENVCIAKKGPHLKSGQVLIVQVDS 1095


>sp|Q1KXX0|RPOC2_HELAN DNA-directed RNA polymerase subunit beta''
            OS=Helianthus annuus GN=rpoC2 PE=3 SV=1
          Length = 1362

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            HYNY      I+  G+  C+ VC      HLK G+V +  +DS
Sbjct: 1053 HYNYCEETSTIVSLGQFLCENVCIAKKGPHLKSGQVLILQVDS 1095


>sp|B2LMI2|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta''
            OS=Guizotia abyssinica GN=rpoC2 PE=3 SV=1
          Length = 1381

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            HYNY      I+  G+  C+ VC      HLK G+V +  +DS
Sbjct: 1053 HYNYCEETSTIVSLGQFLCENVCIAKKGPHLKSGQVLILQVDS 1095


>sp|Q9ZDR8|CTAA_RICPR Heme A synthase OS=Rickettsia prowazekii
           GN=ctaA PE=3 SV=1
          Length = 334

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 188 CFDSFMEWVMLVKGLAQDHEV-----AICLV*SLVGLRFVYYQLKRSTCQL 51
           C   FM W M+  GL  +H V     A  L+ +++    ++YQL ++ C L
Sbjct: 129 CIQGFMGWYMVESGLLNNHSVSHFRLAFHLIIAVIIYHILFYQLIKNYCDL 179


>sp|Q09FX1|RPOC2_NANDO DNA-directed RNA polymerase subunit beta''
            OS=Nandina domestica GN=rpoC2 PE=3 SV=1
          Length = 1377

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            H++Y      II  G+ FC+ VC      HLK G+V + ++DS
Sbjct: 1045 HHDYCEETSTIISLGQFFCENVCISKYGPHLKSGQVIIVHVDS 1087


>sp|A4QJS3|RPOC2_OLIPU DNA-directed RNA polymerase subunit beta''
            OS=Olimarabidopsis pumila GN=rpoC2 PE=3 SV=1
          Length = 1379

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            H+NY      II  G++FC+ VC      HLK G+V +   DS
Sbjct: 1054 HHNYCEETSTIISLGQLFCENVCIAKKEPHLKSGQVLIVQRDS 1096


>sp|Q7Z2Z1|CO042_HUMAN Uncharacterized protein C15orf42 OS=Homo
            sapiens GN=C15orf42 PE=1 SV=2
          Length = 1910

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 83   RQTSNPQGFIPNRLPPHGLGQVP-SPTSPIP*KNQSTDRISHLLKPYTHP 229
            RQ + P GF+PN   PH +   P SP+ P P  + +       L P   P
Sbjct: 1198 RQGTQPPGFLPNCTWPHSVNSSPESPSCPAPPTSSTAQPRRECLTPIRDP 1247


>sp|P34225|YBG0_YEAST PH and SEC7 domain-containing protein YBL060W
           OS=Saccharomyces cerevisiae GN=YBL060W PE=1 SV=1
          Length = 687

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +3

Query: 54  LACTSLQLVVDKPQTHKASYQTDCH-----LMVLGKSLHQHHPF-HKRIK-ARIAFL 203
           L C S++ +   P TH  S    CH     L++L   LH +    HK+IK + +AF+
Sbjct: 169 LECLSIEWIACHPNTHWKSGYKSCHIVLFSLLILNSDLHNNFQVDHKKIKFSMVAFI 225


>sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''
            OS=Vitis vinifera GN=rpoC2 PE=3 SV=1
          Length = 1394

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            H+NY      II  G+  C+ VC      HLK G+V +  +DS
Sbjct: 1060 HHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQVDS 1102
tr_hit_id B8CRP1
Definition tr|B8CRP1|B8CRP1_9GAMM Amino acid-binding ACT OS=Shewanella piezotolerans WP3
Align length 82
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918791|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_E05.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8CRP1|B8CRP1_9GAMM Amino acid-binding ACT OS=Shewanella piez...    36   1.4  
tr|B0TMM2|B0TMM2_SHEHH Amino acid-binding ACT domain protein OS=...    35   1.8  
tr|Q7Q532|Q7Q532_ANOGA AGAP006669-PA OS=Anopheles gambiae GN=AGA...    35   2.4  
tr|A8H679|A8H679_SHEPA Amino acid-binding ACT domain protein OS=...    35   3.2  
tr|A0ZBN9|A0ZBN9_NODSP Cell wall hydrolase/autolysin OS=Nodulari...    34   4.1  
tr|B6MXA4|B6MXA4_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|A1XKD5|A1XKD5_9LILI RNA polymerase beta chain (Fragment) OS=H...    34   5.4  
tr|B3L338|B3L338_PLAKH SICA antigen (Fragment) OS=Plasmodium kno...    33   7.0  
tr|B2B1L8|B2B1L8_PODAN Predicted CDS Pa_6_3740 OS=Podospora anse...    33   7.2  
tr|A9XW73|A9XW73_EUCLU DNA-directed RNA polymerase (Fragment) OS...    33   9.2  
tr|A9XW71|A9XW71_9ROSI DNA-directed RNA polymerase (Fragment) OS...    33   9.2  

>tr|B8CRP1|B8CRP1_9GAMM Amino acid-binding ACT OS=Shewanella
           piezotolerans WP3 GN=swp_3347 PE=4 SV=1
          Length = 166

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +3

Query: 228 HLLNSLIITDNNGLVMQTIRSISMVGMSLEH**LEAKKHQMTEHSGNNISHSGINI---S 398
           HL  SL+  D  GLV +    IS +G+++EH    + +++   H+G  +  +  N+    
Sbjct: 85  HLSYSLVAYDRPGLVHEISNKISALGINIEH---MSTRYESASHTGIALFRAEFNVGLKD 141

Query: 399 DSHSSLLQMCAHSFAKDFPTEN 464
            SH   L    H+   D   +N
Sbjct: 142 ASHEDKLTEALHAIGDDVVLDN 163


>tr|B0TMM2|B0TMM2_SHEHH Amino acid-binding ACT domain protein
           OS=Shewanella halifaxensis (strain HAW-EB4) GN=Shal_2830
           PE=4 SV=1
          Length = 166

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +3

Query: 228 HLLNSLIITDNNGLVMQTIRSISMVGMSLEH**LEAKKHQMTEHSGNNISHSGINIS--- 398
           H   SL+  D  GLV +    IS +G+++EH    + +++   H+G  +  +  N+S   
Sbjct: 85  HASYSLVAYDRPGLVHEISNKISALGINIEH---MSTRYESASHTGIALFRADFNVSMKG 141

Query: 399 DSHSSLLQMCAHSFAKDFPTEN 464
           D     L    HS   D   +N
Sbjct: 142 DHDEEQLTQALHSIGDDVVLDN 163


>tr|Q7Q532|Q7Q532_ANOGA AGAP006669-PA OS=Anopheles gambiae
            GN=AGAP006669 PE=4 SV=4
          Length = 2482

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +2

Query: 41   SSFEVGMYFSSVGSRQTSNPQGFIPNRLPPHGLGQVPSPTSPIP*KNQSTDRISHLLKPY 220
            SS    ++ SS+ S Q+  P    P  LPPHG G  P P  P P          H++ P 
Sbjct: 1225 SSQATPLHGSSIASPQSGGP----PPSLPPHGAGSYPPPHGPPP-----PGHPGHIVNPG 1275

Query: 221  THPSL 235
              P+L
Sbjct: 1276 LMPTL 1280


>tr|A8H679|A8H679_SHEPA Amino acid-binding ACT domain protein
           OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
           GN=Spea_2746 PE=4 SV=1
          Length = 166

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +3

Query: 228 HLLNSLIITDNNGLVMQTIRSISMVGMSLEH**LEAKKHQMTEHSGNNISHSGINISDSH 407
           H+  SL+  D  GLV +    IS +G+++EH    + +++   H+G  +  +  N+S   
Sbjct: 85  HVSYSLVAYDRPGLVHEISNKISALGINIEH---MSTRYESASHTGIALFRADFNVSMKD 141

Query: 408 S---SLLQMCAHSFAKDFPTEN 464
           S     L    HS   D   +N
Sbjct: 142 SLDEERLTQALHSIGDDVVLDN 163


>tr|A0ZBN9|A0ZBN9_NODSP Cell wall hydrolase/autolysin OS=Nodularia
           spumigena CCY 9414 GN=N9414_08355 PE=4 SV=1
          Length = 641

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 77  GSRQT--SNPQGFIPNRLPPHGLGQVPSPTSPIP*KNQSTDR 196
           GSRQ   S P  F P  LPP   GQ+PSPT+P P ++Q   R
Sbjct: 419 GSRQARVSPPVAFPP--LPPPTQGQLPSPTAPPPPRSQPAPR 458


>tr|B6MXA4|B6MXA4_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_125057 PE=4 SV=1
          Length = 5576

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 102  CGFEVCLLPTEEKYMPTSKEECCVSTTAESLT 7
            C +E C+ PT  +Y PT+ E   VSTT E  T
Sbjct: 1657 CCWEECVTPTSTEYPPTTTESTTVSTTTEPTT 1688


>tr|A1XKD5|A1XKD5_9LILI RNA polymerase beta chain (Fragment)
           OS=Hydrocleys nymphoides GN=rpoC2 PE=4 SV=1
          Length = 776

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497 HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
           HY+Y +    II  G+ FC+ VC      H++ G+V + ++DS
Sbjct: 554 HYDYCDELSPIIILGQFFCENVCLFKYGPHIRSGQVLIVHVDS 596


>tr|B3L338|B3L338_PLAKH SICA antigen (Fragment) OS=Plasmodium
           knowlesi (strain H) GN=PKH_073450 PE=4 SV=1
          Length = 1205

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 461 KLFATNNSGNCSGNRPCLTC 520
           K +  NN+GNC+GN PC+ C
Sbjct: 318 KAWEPNNTGNCTGNSPCIEC 337


>tr|B2B1L8|B2B1L8_PODAN Predicted CDS Pa_6_3740 OS=Podospora
           anserina PE=4 SV=1
          Length = 733

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +1

Query: 73  SW**TNLKPTRLHTKQIATSWSWAS-PF---TNITHSIKESKHGSHFSSV-KAIHP 225
           +W  T    +R + + IA SWSWAS P    TN  H+ K S H    S V + IHP
Sbjct: 507 AWSVTKGANSRQNLQHIAPSWSWASLPLRIETNTKHAFKPSDHFKFISVVEEKIHP 562


>tr|A9XW73|A9XW73_EUCLU DNA-directed RNA polymerase (Fragment)
            OS=Eucryphia lucida GN=rpoC2 PE=3 SV=1
          Length = 1280

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 497  HYNYLNYWLQIIFSGKIFCKTVC-----AHLKKGRVRV*YIDS 384
            H+NY      II  G+ FC+ VC      HLK G+V +  +DS
Sbjct: 1027 HHNYCEETSTIISLGQFFCENVCIAKNGPHLKSGQVIILQVDS 1069