BP918803 |
Clone id |
YMU001_000117_F05 |
Library |
YMU01 |
Length |
512 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000117_F05. |
Accession |
BP918803 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGAAACGTAAGGCTGATCATTATGTAGACTTAATTAAAACATCCAAAGGGTGTGCTACAT TGCGCATAAATGCGTAGCTAGGTAAGCTATCCACAAAAAAAAACATTCACTTAGATCCGC TCAAAATGGAGGGTTCAAAATCCATAAAGTACACCGTTGTATAAGTATAGTGTCAATTGA GTTCATATGCTGGATATGCTCCCAAAACACCAGCCCCCGAGCGTGCTATTGCTCATGCGT CTCTATACCTCCGCCAAACAACGTAAGCACCAATCATGCAGCTGCACCCTCAGAGTGCAT ACGTCCACGTCCTCGAACCAATCCTTTGTAAGCCAATATCGCCCAGGCCTGTCTTCCAAT CCACTTGCAATCAGTTCCCTCATGATCCTCATGACATAAAATCCGCAATCGATCGATCAC ATTTGTCTGCTGAGGCACATCCACAACTTTGAGCTCAATCTCTTCCTTGGAATCAGCCAA AGCACGTCGAACATCGTTGTCATGTACAAATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7Z5L2 |
Definition |
sp|Q7Z5L2|GIDRP_HUMAN Growth inhibition and differentiation-related protein 88 OS=Homo sapiens |
Align length |
41 |
Score (bit) |
32.3 |
E-value |
1.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BKK8 |
Definition |
tr|A5BKK8|A5BKK8_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
40 |
Score (bit) |
34.7 |
E-value |
2.8 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918803|Adiantum capillus-veneris mRNA, clone: YMU001_000117_F05. (512 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5BKK8|A5BKK8_VITVI Putative uncharacterized protein OS=Vitis... 35 2.8 tr|B8LRB5|B8LRB5_PICSI Putative uncharacterized protein OS=Picea... 29 4.5 tr|A5AGA3|A5AGA3_VITVI Putative uncharacterized protein OS=Vitis... 34 4.8 tr|Q86ZD9|Q86ZD9_9ASCO Type I polyketide synthase OS=Phoma sp. C... 34 4.8 tr|A5BU47|A5BU47_VITVI Putative uncharacterized protein OS=Vitis... 33 6.2 tr|A5BSS4|A5BSS4_VITVI Putative uncharacterized protein OS=Vitis... 33 6.2 tr|A5BMG6|A5BMG6_VITVI Putative uncharacterized protein (Fragmen... 33 6.2 tr|A5BIL3|A5BIL3_VITVI Putative uncharacterized protein OS=Vitis... 33 6.2 tr|A8IP09|A8IP09_CHLRE Predicted protein OS=Chlamydomonas reinha... 33 8.1
>tr|A5BKK8|A5BKK8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028949 PE=4 SV=1 Length = 312
Score = 34.7 bits (78), Expect = 2.8 Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 6/40 (15%) Frame = -1
Query: 470 PRKRLSSK---LWM---CLSRQM*SIDCGFYVMRIMRELI 369 P K+ SSK W+ CL RQ+ S++CG+YVMR M+++I Sbjct: 240 PEKQRSSKREPTWVKVVCL-RQLGSVECGYYVMRYMKDII 278
>tr|B8LRB5|B8LRB5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 586
Score = 29.3 bits (64), Expect(2) = 4.5 Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = -1
Query: 410 DCGFYVMRIMRELIASG-----LEDRPGRYWLTKDWFEDVDVCTLRVQLHDWCLR---CL 255 DCG +++ + + + + + Y+LTK+WF+ ++ R Q++D L+ C+ Sbjct: 493 DCGVFLLHFVDKFLKRAPKNFSISEGCYPYFLTKNWFKSHEIGKRRKQIYDVILKDRHCV 552
Query: 254 AEV*RR 237 +++ +R Sbjct: 553 SQMTKR 558
Score = 23.9 bits (50), Expect(2) = 4.5 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3
Query: 507 VHDNDVRRALADSKEEIELKVVDVPQQTNVIDRLRILCH 391 VH+ D R+ +I L V +VPQQTN D L H Sbjct: 462 VHNEDGRQDGDKIIAKIPLLVPEVPQQTNGNDCGVFLLH 500
>tr|A5AGA3|A5AGA3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027850 PE=4 SV=1 Length = 736
Score = 33.9 bits (76), Expect = 4.8 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 5/41 (12%) Frame = -1
Query: 470 PRKRLSSK---LWMCL--SRQM*SIDCGFYVMRIMRELIAS 363 P K+ +SK W+ + RQ S++CG+YVMR M+E+IA+ Sbjct: 647 PEKQKTSKREPTWVKVVCPRQPGSVECGYYVMRYMKEIIAN 687
>tr|Q86ZD9|Q86ZD9_9ASCO Type I polyketide synthase OS=Phoma sp. C2932 PE=2 SV=1 Length = 2603
Score = 33.9 bits (76), Expect = 4.8 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1
Query: 371 IASGLEDRPGRYWLTKDWFEDVDVCTLRVQLHD 273 I +G+ +PGR+W W +D TLR + D Sbjct: 2454 IITGISTKPGRHWTESSWLQDARFATLRERARD 2486
>tr|A5BU47|A5BU47_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1 Length = 1783
Score = 33.5 bits (75), Expect = 6.2 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 5/39 (12%) Frame = -1
Query: 470 PRKRLSSK---LWMCL--SRQM*SIDCGFYVMRIMRELI 369 P K+ SSK W+ + RQ+ S++CG+YVMR M+++I Sbjct: 1610 PEKQRSSKREPTWVKVVCPRQLGSVECGYYVMRYMKDII 1648
>tr|A5BSS4|A5BSS4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1 Length = 1464
Score = 33.5 bits (75), Expect = 6.2 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 5/39 (12%) Frame = -1
Query: 470 PRKRLSSK---LWMCL--SRQM*SIDCGFYVMRIMRELI 369 P K+ SSK W+ + RQ+ S++CG+YVMR M+++I Sbjct: 1386 PEKQRSSKREPTWVKVVCPRQLGSVECGYYVMRYMKDII 1424
>tr|A5BMG6|A5BMG6_VITVI Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 PE=4 SV=1 Length = 1394
Score = 33.5 bits (75), Expect = 6.2 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 5/39 (12%) Frame = -1
Query: 470 PRKRLSSK---LWMCL--SRQM*SIDCGFYVMRIMRELI 369 P K+ SSK W+ + RQ+ S++CG+YVMR M+++I Sbjct: 1285 PEKQRSSKREPTWVKVVCPRQLGSVECGYYVMRYMKDII 1323
>tr|A5BIL3|A5BIL3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034073 PE=4 SV=1 Length = 1397
Score = 33.5 bits (75), Expect = 6.2 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 5/39 (12%) Frame = -1
Query: 470 PRKRLSSK---LWMCL--SRQM*SIDCGFYVMRIMRELI 369 P K+ SSK W+ + RQ+ S++CG+YVMR M+++I Sbjct: 1296 PEKQRSSKREPTWVKVVCPRQLGSVECGYYVMRYMKDII 1334
>tr|A8IP09|A8IP09_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_205734 PE=4 SV=1 Length = 281
Score = 33.1 bits (74), Expect = 8.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +2
Query: 230 CSCVSIPPPNNVSTNHAAAPSECIRPRPRTNP 325 C PPP+ S HA+ PS PRP T+P Sbjct: 109 CRAPRTPPPSAASPRHASPPSGSRTPRPATSP 140
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