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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918806
Clone id YMU001_000117_F08
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCCAACATTGGTCCAAACTACCTTTAAGATCCTGCCTTAAGGTCCATATATGCTCGTCG
GGAAAATCACCACAGCGTGCTCAGTCCTCTCTTGCTGAGGCACCCCGCTACACTCTTCAG
CATCATTCGCTCTAATAAAACTTTCCTTTTTCAAACCTATACTGTTGTCAGTAAATTCTT
CTTACCAAACCAGAGTCAACCACTTTGCAATGCCAGCGCTCTGACACCTTGCCTAGCAAA
CACTACTACTCTGGTTAAACTGGGGTGGGAGCATAAAGTTCTGAAGGCTGAGAACAAACC
TCTTTTCTCATCTTCAATGAAACTTCTGAGATGTCTCAGTTTAAAAAAATTTGTGAACAA
TCACGAAACAATGAATTTTGTGATAGCCACCCACTTCCTCTACTGATGATGAGCACAATC
AAATGGTACTTGCTAGCTGATAAGCTATAGCCATGGCTTAGCCGGGACTGTTCTCCTCTT
CAAACAAGCTTCAATCCATTTATCCACACCATCTCATAAGACCTGAAGCATGGAAACCA
■■Homology search results ■■ -
sp_hit_id Q25490
Definition sp|Q25490|APLP_MANSE Apolipophorins OS=Manduca sexta
Align length 90
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918806|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_F08.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q25490|APLP_MANSE Apolipophorins OS=Manduca sexta PE=2 SV=1         34   0.52 
sp|P46578|GOP1_CAEEL Uncharacterized protein gop-1 OS=Caenorhabd...    30   7.5  
sp|Q66G70|ARLY_YERPS Argininosuccinate lyase OS=Yersinia pseudot...    30   9.8  
sp|A4TRH3|ARLY_YERPP Argininosuccinate lyase OS=Yersinia pestis ...    30   9.8  
sp|Q1CNQ3|ARLY_YERPN Argininosuccinate lyase OS=Yersinia pestis ...    30   9.8  
sp|Q8ZA88|ARLY_YERPE Argininosuccinate lyase OS=Yersinia pestis ...    30   9.8  
sp|Q1CBV4|ARLY_YERPA Argininosuccinate lyase OS=Yersinia pestis ...    30   9.8  
sp|A7FD01|ARLY_YERP3 Argininosuccinate lyase OS=Yersinia pseudot...    30   9.8  
sp|A1JI24|ARLY_YERE8 Argininosuccinate lyase OS=Yersinia enteroc...    30   9.8  

>sp|Q25490|APLP_MANSE Apolipophorins OS=Manduca sexta PE=2 SV=1
          Length = 3305

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
 Frame = -2

Query: 322  FH*R*EKRFVLSLQNFMLPPQ-----FNQSSSVC*ARCQSAGIAKWLTLVW*EEFTDNSI 158
            FH + EK  V+ L  FM  P+        S+S+C +   +  +AK +      E T NS+
Sbjct: 2211 FHPKIEKEAVIRLNAFMKRPENGCFKIESSASLCHSALGTDRVAKVMF-----ETTPNSV 2265

Query: 157  GLKKES-FIRANDAEECSGVPQQERTEHAV 71
                ++ F++A D E    V QQ+RT+  +
Sbjct: 2266 KFLADTPFVKAIDVEGSFNVNQQQRTQQCL 2295


>sp|P46578|GOP1_CAEEL Uncharacterized protein gop-1
           OS=Caenorhabditis elegans GN=gop-1 PE=2 SV=1
          Length = 892

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
 Frame = +2

Query: 20  YL*DPALRSIYARRENHHSVLSP-----------LLLRHPATLFSIIRSNKTFLFQTYTV 166
           YL    L SI  RR+NH  +L+P           L++RH  T+++ + S   FLF T   
Sbjct: 279 YLSPLLLSSISPRRDNHSLLLTPISALFFFSEFLLIVRHHETIYTFLSS---FLFDTQNT 335

Query: 167 VSKFFL 184
           ++  ++
Sbjct: 336 LTTHWI 341


>sp|Q66G70|ARLY_YERPS Argininosuccinate lyase OS=Yersinia
           pseudotuberculosis GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452


>sp|A4TRH3|ARLY_YERPP Argininosuccinate lyase OS=Yersinia pestis
           (strain Pestoides F) GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452


>sp|Q1CNQ3|ARLY_YERPN Argininosuccinate lyase OS=Yersinia pestis bv.
           Antiqua (strain Nepal516) GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452


>sp|Q8ZA88|ARLY_YERPE Argininosuccinate lyase OS=Yersinia pestis
           GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452


>sp|Q1CBV4|ARLY_YERPA Argininosuccinate lyase OS=Yersinia pestis bv.
           Antiqua (strain Antiqua) GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452


>sp|A7FD01|ARLY_YERP3 Argininosuccinate lyase OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452


>sp|A1JI24|ARLY_YERE8 Argininosuccinate lyase OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=argH PE=3 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  LPLRSCLKVHICSSGKSPQRAQSSLAEA 102
           L L+SCL   +   G SPQ+  S++AEA
Sbjct: 425 LALQSCLDKRVAKGGVSPQQVASAIAEA 452
tr_hit_id Q467E2
Definition tr|Q467E2|Q467E2_METBF Potassium channel protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
Align length 89
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918806|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_F08.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q467E2|Q467E2_METBF Potassium channel protein OS=Methanosarci...    36   1.1  
tr|A2ELF3|A2ELF3_TRIVA PIKK family atypical protein kinase OS=Tr...    33   7.3  

>tr|Q467E2|Q467E2_METBF Potassium channel protein OS=Methanosarcina
           barkeri (strain Fusaro / DSM 804) GN=Mbar_A3113 PE=4
           SV=1
          Length = 347

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 24/89 (26%), Positives = 46/89 (51%)
 Frame = +2

Query: 89  LLLRHPATLFSIIRSNKTFLFQTYTVVSKFFLPNQSQPLCNASALTPCLANTTTLVKLGW 268
           +L RHP   + I+     F+F  Y +  ++F+  ++QP  NA+ +T     TTT+  +G+
Sbjct: 18  ILHRHPYVAYKIVA---VFIFVIYVLTFEYFMIFENQPE-NANLITAIYWATTTIATVGY 73

Query: 269 EHKVLKAENKPLFSSSMKLLRCLSLKKFV 355
              V  +    LFS  +++L  + +  F+
Sbjct: 74  GDIVFTSLPGRLFSIVVQVLGIILISGFL 102


>tr|A2ELF3|A2ELF3_TRIVA PIKK family atypical protein kinase
            OS=Trichomonas vaginalis G3 GN=TVAG_257180 PE=4 SV=1
          Length = 2251

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +2

Query: 65   NHHSVLSPLLLRHPATLFSIIRSNKTFLFQTYTVVSKFFLPNQ-SQPLCNASALTPCLAN 241
            ++HS+L PLLL     L + IR ++   F +  V S     N   + L   + L+ C  N
Sbjct: 1670 HYHSLLFPLLLCIRENLPNSIRIDQDVTFSSLQVTSPEEEDNNYEEDLAETNFLSEC-KN 1728

Query: 242  TTTLVKLGWEHKVLKAENKPLFSSSMKLLRCLSLK 346
             +    L W +K+     +   + S  LLRC S K
Sbjct: 1729 ESAAELLNWFYKINPKSVREAITISEGLLRCSSTK 1763