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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918815
Clone id YMU001_000117_G06
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGCAATAAACAAATTTCATGTGATACAATGGGAATACAAAATTGC
ATGCTTCTTTCACATTCGAAGCAATTCAATGGGCGACAATTAATGGTACAAATAATCGGC
TTCCTGTGCTATCAGCAAGTTCAGGTTCCATGATTCATATAGTCTTTTATACAAACACTT
TGGATCCTTGATATTTAAAAATATCGCCTATACAATGCGCCTTTTGTGGATTGCATTTCG
GCCAAAGAAAGGGACTTACATCCACCTCTTCTAAAGATCATAGACTTACATGTACACAAG
CTATTTATCCAGGCATTCTAAATTCCAGTTTCTGCCCAAATCATCCTGCTTACATTCTCC
AATGGTTAGTCGCAACAAATGAAATTTGCGTAGACTGCTTCTATGTCCTACACTGATGTA
TGTTATACCAGCTGCATGAACAAGCCTATACAAAGCTGCCTCGTTCTCTTCAT
■■Homology search results ■■ -
sp_hit_id O14678
Definition sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4 OS=Homo sapiens
Align length 37
Score (bit) 43.9
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918815|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_G06.
         (457 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4...    44   3e-04
sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4...    43   7e-04
sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding...    38   0.018
sp|Q3V087|YP043_MOUSE Uncharacterized protein ENSP00000371449 ho...    30   3.8  
sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2...    30   4.9  
sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 O...    29   8.4  
sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2...    29   8.4  

>sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4
           OS=Homo sapiens GN=ABCD4 PE=2 SV=1
          Length = 606

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTI 345
           EE E+ LYR+    G+T+ISVGHR SL KFH L L +
Sbjct: 556 EEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKL 592


>sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4
           OS=Mus musculus GN=Abcd4 PE=2 SV=1
          Length = 606

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFH--LLRL 351
           EE E+ LYR+    G+T+ISVGHR SL KFH  +LRL
Sbjct: 556 EEAESELYRIGQQLGMTFISVGHRPSLEKFHSWVLRL 592


>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding
           protein sll0182 OS=Synechocystis sp. (strain PCC 6803)
           GN=sll0182 PE=3 SV=1
          Length = 661

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -3

Query: 449 NEAALYRLVHAAGITYISVGHRSSLRKFH 363
           NEA LY  +   G T+ISVGHR +LR FH
Sbjct: 614 NEAELYHALTDLGTTFISVGHRPTLRNFH 642


>sp|Q3V087|YP043_MOUSE Uncharacterized protein ENSP00000371449
           homolog OS=Mus musculus PE=2 SV=1
          Length = 258

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 255 EEVDVSPFLWPKCNPQKAHCIGDIFKYQGSKV 160
           ++VD   F++ K NPQK   +GD  K Q  K+
Sbjct: 164 KDVDTIKFIFEKVNPQKLELLGDDLKTQSRKL 195


>sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2
           OS=Homo sapiens GN=ABCD2 PE=1 SV=1
          Length = 740

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 446 EAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLD 291
           E  +++    AGI+ +S+ HR SL K+H   L      Q D    W  E LD
Sbjct: 644 EGKIFQAAKGAGISLLSITHRPSLWKYHTHLL------QFDGEGGWRFEQLD 689


>sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2
           OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1
          Length = 741

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 446 EAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLD 291
           E  +++    AGI+ +S+ HR SL K+H   L      Q D    W  E LD
Sbjct: 645 EGKIFQAAIGAGISLLSITHRPSLWKYHTHLL------QFDGEGGWRFEQLD 690


>sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2
           OS=Mus musculus GN=Abcd2 PE=1 SV=1
          Length = 741

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 446 EAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLD 291
           E  +++    AGI+ +S+ HR SL K+H   L      Q D    W  E LD
Sbjct: 645 EGKIFQAAIGAGISLLSITHRPSLWKYHTHLL------QFDGEGGWRFEQLD 690
tr_hit_id B8A0C7
Definition tr|B8A0C7|B8A0C7_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 57
Score (bit) 55.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918815|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_G06.
         (457 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A0C7|B8A0C7_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|Q9SLJ9|Q9SLJ9_ARATH F20D21.17 protein OS=Arabidopsis thaliana...    55   1e-06
tr|Q6NLC1|Q6NLC1_ARATH At1g54350 OS=Arabidopsis thaliana GN=At1g...    55   1e-06
tr|A7QMN6|A7QMN6_VITVI Chromosome chr19 scaffold_126, whole geno...    55   1e-06
tr|A5BX90|A5BX90_VITVI Putative uncharacterized protein OS=Vitis...    55   1e-06
tr|A2Q3K0|A2Q3K0_MEDTR AAA ATPase; ABC transporter, transmembran...    51   3e-05
tr|A9TFA7|A9TFA7_PHYPA ATP-binding cassette transporter, subfami...    50   4e-05
tr|A9SSI7|A9SSI7_PHYPA ATP-binding cassette transporter, subfami...    50   7e-05
tr|Q5QNE1|Q5QNE1_ORYSJ Putative ABC transporter Nda (Os01g021870...    49   1e-04
tr|B8AAK9|B8AAK9_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A2ZQQ6|A2ZQQ6_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A8K5L7|A8K5L7_HUMAN cDNA FLJ77136, highly similar to Homo sap...    45   0.002
tr|Q8YTQ0|Q8YTQ0_ANASP ABC transporter ATP-binding protein OS=An...    44   0.004
tr|A8IIQ5|A8IIQ5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    43   0.007
tr|Q5E9I5|Q5E9I5_BOVIN ATP-binding cassette, sub-family D, membe...    43   0.007
tr|B7KI74|B7KI74_9CHRO ABC transporter domain protein OS=Cyanoth...    43   0.009
tr|B4CVY0|B4CVY0_9BACT ABC transporter domain protein OS=Chthoni...    42   0.012
tr|Q8YTR3|Q8YTR3_ANASP ABC transporter ATP-binding protein OS=An...    42   0.015
tr|B6N3L8|B6N3L8_BRAFL Putative uncharacterized protein OS=Branc...    42   0.015
tr|B6L3Y6|B6L3Y6_BRAFL Putative uncharacterized protein OS=Branc...    42   0.015
tr|B7K3Q1|B7K3Q1_SYNP8 ABC transporter domain protein OS=Synecho...    42   0.020
tr|B4C1M8|B4C1M8_9CHRO ABC transporter domain protein OS=Cyanoth...    42   0.020
tr|B3SDE8|B3SDE8_TRIAD Putative uncharacterized protein (Fragmen...    41   0.026
tr|A0Z9R8|A0Z9R8_NODSP ABC transporter ATP-binding protein OS=No...    41   0.034
tr|A0Z9R7|A0Z9R7_NODSP ABC transporter ATP-binding protein OS=No...    41   0.034
tr|A8WXY2|A8WXY2_CAEBR CBR-PMP-3 protein OS=Caenorhabditis brigg...    40   0.044
tr|B1WV85|B1WV85_CYAA5 ATP-binding protein of ABC transporter OS...    40   0.058
tr|Q4KIB6|Q4KIB6_PSEF5 ABC transporter, ATP-binding protein OS=P...    40   0.076
tr|Q87WJ5|Q87WJ5_PSESM ABC transporter, ATP-binding protein OS=P...    39   0.13 
tr|Q4C6B9|Q4C6B9_CROWT ABC transporter OS=Crocosphaera watsonii ...    39   0.13 

>tr|B8A0C7|B8A0C7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 392

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLG-RNWNLECLDK 288
           E NEA LY  + AAGITY+S+GHR +L KFH   L I      D   RNW L+  DK
Sbjct: 325 EANEAHLYSQIEAAGITYVSIGHRKTLHKFHNKALYISMSDSTDTNPRNWELKPADK 381


>tr|Q9SLJ9|Q9SLJ9_ARATH F20D21.17 protein OS=Arabidopsis thaliana
           GN=F20D21.17 PE=3 SV=1
          Length = 514

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 27/55 (49%), Positives = 34/55 (61%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLD 291
           E NEA LY+ + +AGITYIS+GHR +L KFH   L I         RNW +E +D
Sbjct: 442 EANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTADPKSNERNWRIEDVD 496


>tr|Q6NLC1|Q6NLC1_ARATH At1g54350 OS=Arabidopsis thaliana
           GN=At1g54350 PE=2 SV=1
          Length = 706

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 27/55 (49%), Positives = 34/55 (61%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLD 291
           E NEA LY+ + +AGITYIS+GHR +L KFH   L I         RNW +E +D
Sbjct: 634 EANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTADPKSNERNWRIEDVD 688


>tr|A7QMN6|A7QMN6_VITVI Chromosome chr19 scaffold_126, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002136001
           PE=3 SV=1
          Length = 681

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLDK*LVY 276
           E NEA LY+ + AAGITY+S+GHR +L  +H  RL I     +   RNW +E +++  +Y
Sbjct: 617 EANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQRNWYIEPINQDTMY 676


>tr|A5BX90|A5BX90_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_004748 PE=4 SV=1
          Length = 1504

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = -3

Query: 455  EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECLDK*LVY 276
            E NEA LY+ + AAGITY+S+GHR +L  +H  RL I     +   RNW +E +++  +Y
Sbjct: 1440 EANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQRNWYIEPINQDTMY 1499


>tr|A2Q3K0|A2Q3K0_MEDTR AAA ATPase; ABC transporter, transmembrane
           region, type 1 OS=Medicago truncatula
           GN=MtrDRAFT_AC155884g14v2 PE=3 SV=1
          Length = 613

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 26/52 (50%), Positives = 32/52 (61%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLE 300
           E NE  LY  + AAGITYISVGHRS+L  FH   L I     ++   NW++E
Sbjct: 552 EANEVYLYEKIAAAGITYISVGHRSTLSNFHDRILRISTTDSNNEQPNWHIE 603


>tr|A9TFA7|A9TFA7_PHYPA ATP-binding cassette transporter, subfamily
           D, member 7, group PMP protein PpABCD7 (Fragment)
           OS=Physcomitrella patens subsp. patens GN=ppabcd7 PE=3
           SV=1
          Length = 657

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 28/54 (51%), Positives = 31/54 (57%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNLECL 294
           E NE +LY  V  AGIT +SVGHRSSLR+FH   L   E  Q   G  W L  L
Sbjct: 594 ENNEVSLYTAVQEAGITIVSVGHRSSLRRFHKNILQFEEA-QGSSGTTWTLSRL 646


>tr|A9SSI7|A9SSI7_PHYPA ATP-binding cassette transporter, subfamily
           D, member 2, group PMP protein PpABCD2 (Fragment)
           OS=Physcomitrella patens subsp. patens GN=ppabcd2 PE=3
           SV=1
          Length = 658

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = -3

Query: 455 EENEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLGRNWNL 303
           E+NE +LY  V  AGIT +SVGHR++LR+FH + L   E      GR W +
Sbjct: 595 EKNEVSLYAAVQEAGITVVSVGHRNTLRRFHKIILQFEE-SSGSSGREWTI 644


>tr|Q5QNE1|Q5QNE1_ORYSJ Putative ABC transporter Nda (Os01g0218700
           protein) OS=Oryza sativa subsp. japonica GN=P0665D10.28
           PE=3 SV=1
          Length = 771

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 449 NEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLG-RNWNLE 300
           NE  LY  + AAGITYIS+GHR +L KFH   L I      D   RNW L+
Sbjct: 706 NERHLYSQIEAAGITYISIGHRKTLHKFHNKVLYISNSDSTDSNPRNWYLK 756


>tr|B8AAK9|B8AAK9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00916 PE=4 SV=1
          Length = 785

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 449 NEAALYRLVHAAGITYISVGHRSSLRKFHLLRLTIGECKQDDLG-RNWNLE 300
           NE  LY  + AAGITYIS+GHR +L KFH   L I      D   RNW L+
Sbjct: 720 NERHLYSQIEAAGITYISIGHRKTLHKFHNKVLYISNSDSTDSNPRNWYLK 770