BP918819
Clone id YMU001_000117_G10
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTCGACACCAGAACAACATAATTGATTTGAATGGTGCTAGTAAGGTGTGTACAATGACCT
GTAGTTCATGGAGAGTGTGGCGAGCTTCCTCTTTGAAGATATGGGATTGAAGATATGGGA
AACCCTCTTTCTGCAATGCTTCCCCTTGCTCGGTAGTGCTACCTTCAGACGAATTTTTTC
CACCTTTCGACCTTCCTGCAGCAGTAAGAGTTAGCGATGCAACCCACTTTGCAATCTGCA
ATCGGTTCTTCACACTCCTGCAAACTCCACCAGCTTTTGGTGCTTCACCTCCTCTCTCTG
TGAGTAGCGCTTTGTAACGCCAGCCCTTCCCTTGTTTTTACAGCCCATTCCAATATTTTT
AATGGTGACCCTCCCTTCTTGCTTGTGAGGCCACTCGTCCTCTTATCAACCCTGTCTATA
TCCAATTGCGCCACCATCCGGTAACACCATGTCGTGGTTGTCCTCTACAGTAACGCCTCC
AGATGCTTGCTCATATCTACCCACAGTGTGAAACTCTCCCCATGCTCGCTGCGCCCCATA
TAGCCTTCTCTGCAGTCCTGA
■■Homology search results ■■ -
sp_hit_id P02566
Definition sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans
Align length 70
Score (bit) 31.2
E-value 3.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918819|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_G10.
(561 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans GN=unc-5... 31 3.6
sp|O83045|FTSK_AZOBR DNA translocase ftsK (Fragment) OS=Azospiri... 31 3.6
sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis th... 31 4.7
sp|P27990|PALY_MEDSA Phenylalanine ammonia-lyase OS=Medicago sat... 30 8.1

>sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans GN=unc-54
PE=1 SV=1
Length = 1966

Score = 31.2 bits (69), Expect = 3.6
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -2

Query: 431 AQLDIDRVDKRTSGLTSKKGGSPLKILEWAVKTREGLALQSATHRERR*STKSWWSLQEC 252
AQ+D++R + S L K+ G I EW KT + A R+ R ++ + +
Sbjct: 1440 AQVDVERANGVASALEKKQKGFDKIIDEWRKKTDDLAAELDGAQRDLRNTSTDLFKAKNA 1499

Query: 251 EEPIADCKVG 222
+E +A+ G
Sbjct: 1500 QEELAEVVEG 1509


>sp|O83045|FTSK_AZOBR DNA translocase ftsK (Fragment)
OS=Azospirillum brasilense GN=ftsK PE=3 SV=1
Length = 631

Score = 31.2 bits (69), Expect = 3.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3

Query: 292 GGEAPKAGGVCRSVKNRLQIAKWVASLTLTAAGRSKGGKNSSEG 161
G A AGG+ V L I +W ASL TAAG ++ G+ + G
Sbjct: 186 GTVAGVAGGLILFVAMGLSIREWAASLRETAAGLARLGRGARTG 229


>sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis
thaliana GN=ELF3 PE=1 SV=1
Length = 695

Score = 30.8 bits (68), Expect = 4.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2

Query: 413 CLYPIAPPSGNTMSWLSSTVTPPDACSYLP 502
C P PPSGN WL ++P + Y P
Sbjct: 457 CFPPQPPPSGNHQQWLIPVMSPSEGLIYKP 486


>sp|P27990|PALY_MEDSA Phenylalanine ammonia-lyase OS=Medicago sativa
PE=2 SV=1
Length = 725

Score = 30.0 bits (66), Expect = 8.1
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = -3

Query: 181 GKNSSEGSTTEQGEALQKEGFPYLQSHIFKE--EARHTLHE------LQVIVHTLLAPFK 26
G ++ S T+QG ALQKE +L + IF E+ HTL + + V ++TLL +
Sbjct: 122 GFGATSHSRTKQGGALQKELIRFLNAGIFGNGTESNHTLPKTATRAAMLVRINTLLQGYS 181

Query: 25 SI 20
I
Sbjct: 182 GI 183


tr_hit_id B2IZG3
Definition tr|B2IZG3|B2IZG3_NOSP7 Multi-sensor signal transduction multi-kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Align length 61
Score (bit) 36.2
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918819|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_G10.
(561 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B2IZG3|B2IZG3_NOSP7 Multi-sensor signal transduction multi-ki... 36 1.2
tr|B2JJN8|B2JJN8_BURP8 Cobalamin synthesis protein P47K OS=Burkh... 34 6.2
tr|B0DI51|B0DI51_LACBS Predicted protein OS=Laccaria bicolor (st... 33 8.1

>tr|B2IZG3|B2IZG3_NOSP7 Multi-sensor signal transduction multi-kinase
OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_R6545 PE=4 SV=1
Length = 1817

Score = 36.2 bits (82), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -2

Query: 473 LL*RTTTTWCYRMVAQLDIDRVDKRTSGLTSKKGGSPLKILEWAVKTREGLALQSATHRE 294
LL + W D D+V R+S L K P ++ + +T+E L L A+H E
Sbjct: 1374 LLVKQDNQWVIEAEGNTDRDQVTVRSSSLVQVKHKLPALLINYVERTKENLVLDDASHTE 1433

Query: 293 R 291
R
Sbjct: 1434 R 1434


>tr|B2JJN8|B2JJN8_BURP8 Cobalamin synthesis protein P47K
OS=Burkholderia phymatum (strain DSM 17167 / STM815)
GN=Bphy_3068 PE=4 SV=1
Length = 419

Score = 33.9 bits (76), Expect = 6.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = -3

Query: 400 GRVASQARREGHH*KYWNGL*KQ------GKGWRYKALLTERGGEAPKAGGVCR 257
G V +ARR H ++W L ++ GKG+ + A E GG +AGG CR
Sbjct: 253 GHVVYRARRPFHPERFWALLHEEWKGVLRGKGFFWLATRNEIGGSLSQAGGACR 306


>tr|B0DI51|B0DI51_LACBS Predicted protein OS=Laccaria bicolor
(strain S238N-H82) GN=LACBIDRAFT_329478 PE=4 SV=1
Length = 1137

Score = 33.5 bits (75), Expect = 8.1
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3

Query: 133 QKEGFPYLQSHIFKEEARHTLHEL--QVIVHTLLAPFKSIMLFW 8
Q+EG YLQ + E A HTLH+L + + LL PF + FW
Sbjct: 673 QEEGTYYLQDLLDGETASHTLHQLGTPLQLALLLTPFYLLFPFW 716