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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918826
Clone id YMU001_000117_H06
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000117_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTGCAATCACATAGTCATTTCAAGAGAGCTTCCGATGATAGAAGCACTCAGTCCGAAGT
GATTGTTAGAGACAAATGCACCATCGATGTCAGAATGGCCGATAATGAAGATGCTGAGGT
GATGAGTGGGAGAGTGGAAGCTGCTTATGATCAAGGTGATGACGAGACCGCAACAGGAAG
TGCATGTGAGGATAGTCAAGAAAGCAGCCATTTGAGAACCTCAAATATGGAGGAAGGTAC
CCGTGGATCCCTTCAAGTTGAACCTGTCCGAAGTGGGGCTTCTCTAAATTCTTTGTGGCA
GTCACAATTGCATGCCCAGCGGAGGCTTCCTGTGTTTCAAGACATCACATTACTAGGAAG
TGCAGCTGCTTAAACGCTGTTTTTAACAAATTATAAGGTCAGCCATTGATGTAACTTCTA
CGGTGTCTGCGTGCGGACTCATGAAATGAACTATGAGGTCTGTGTGTTGGTGCACGCTTG
GAACTTCGCTGTGGGTG
■■Homology search results ■■ -
sp_hit_id Q28IG6
Definition sp|Q28IG6|PP4R2_XENTR Serine/threonine-protein phosphatase 4 regulatory subunit 2 OS=Xenopus tropicalis
Align length 80
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918826|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_H06.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28IG6|PP4R2_XENTR Serine/threonine-protein phosphatase 4 reg...    32   2.1  
sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces ...    31   2.8  
sp|O76041|NEBL_HUMAN Nebulette OS=Homo sapiens GN=NEBL PE=1 SV=1       31   2.8  
sp|Q5I2W8|NBN_DANRE Nibrin OS=Danio rerio GN=nbn PE=2 SV=2             31   3.6  
sp|Q5R8Q4|PATL1_PONAB Protein PAT1 homolog 1 OS=Pongo abelii GN=...    30   6.1  
sp|Q3TC46|PATL1_MOUSE Protein PAT1 homolog 1 OS=Mus musculus GN=...    30   6.1  
sp|Q86TB9|PATL1_HUMAN Protein PAT1 homolog 1 OS=Homo sapiens GN=...    30   6.1  

>sp|Q28IG6|PP4R2_XENTR Serine/threonine-protein phosphatase 4
           regulatory subunit 2 OS=Xenopus tropicalis GN=ppp4r2
           PE=2 SV=1
          Length = 401

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +2

Query: 98  ADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTSNMEEGTRGSLQVEPVRSG 277
           AD E     S   EA  D G+ ++ T S  E+S E SH    + +  T  SL  E   S 
Sbjct: 294 ADEESLMTPSESTEA--DSGERDSETVSVTEESSEESHQMEESEQSETACSLNSEEQNSA 351

Query: 278 ASLNSLWQSQLHAQRRLPVF 337
           A+  S   +    +  L  F
Sbjct: 352 AAAASTVGTDTSEEEHLGTF 371


>sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces
           cerevisiae GN=SRP40 PE=1 SV=2
          Length = 406

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   SHSHFKRASDDRSTQSEVIVRDKCTIDVRMADNEDA-EVMSGRVEAAYDQGDDETATGSA 184
           S S    +SD+ S++SE    D+     R +DNEDA E    + E       + +++GS+
Sbjct: 105 SSSSSSSSSDESSSESES--EDETKKRARESDNEDAKETKKAKTEPESSSSSESSSSGSS 162

Query: 185 CEDSQESSHLRTSNMEEGTRGSLQVE 262
                ES     S+    +  S   E
Sbjct: 163 SSSESESGSESDSDSSSSSSSSSDSE 188


>sp|O76041|NEBL_HUMAN Nebulette OS=Homo sapiens GN=NEBL PE=1 SV=1
          Length = 1014

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 35   DDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDD--ETATGSACEDSQESS 208
            DDRS  SE+     C  +V    +E A V+ G  + ++ QG       + S+    Q S 
Sbjct: 895  DDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSP 954

Query: 209  HLRT 220
            +LRT
Sbjct: 955  NLRT 958


>sp|Q5I2W8|NBN_DANRE Nibrin OS=Danio rerio GN=nbn PE=2 SV=2
          Length = 818

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 101 DNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTSNMEEGT 241
           DNED    S  V  ++    +ET+ G AC   Q SS  +    E+ T
Sbjct: 495 DNEDDIQQSFSVNRSHKTSSEETSLGQACGTGQNSSSKKRKEPEQDT 541


>sp|Q5R8Q4|PATL1_PONAB Protein PAT1 homolog 1 OS=Pongo abelii
           GN=PATL1 PE=2 SV=1
          Length = 770

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 86  DVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTSNMEE 235
           D  + ++EDA    G  +   DQ +D+T    A +D  + +H R + +EE
Sbjct: 9   DCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEE 58


>sp|Q3TC46|PATL1_MOUSE Protein PAT1 homolog 1 OS=Mus musculus
           GN=Patl1 PE=1 SV=2
          Length = 770

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 86  DVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTSNMEE 235
           D  + ++EDA    G  +   DQ +D+T    A +D  + +H R + +EE
Sbjct: 9   DCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEE 58


>sp|Q86TB9|PATL1_HUMAN Protein PAT1 homolog 1 OS=Homo sapiens
           GN=PATL1 PE=1 SV=2
          Length = 770

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 86  DVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTSNMEE 235
           D  + ++EDA    G  +   DQ +D+T    A +D  + +H R + +EE
Sbjct: 9   DCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEE 58
tr_hit_id A4S4A9
Definition tr|A4S4A9|A4S4A9_OSTLU Predicted protein (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
Align length 100
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918826|Adiantum capillus-veneris mRNA, clone:
YMU001_000117_H06.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4S4A9|A4S4A9_OSTLU Predicted protein (Fragment) OS=Ostreococ...    35   1.5  
tr|Q5B3L5|Q5B3L5_EMENI Putative uncharacterized protein OS=Emeri...    35   2.0  
tr|B6KRS4|B6KRS4_TOXGO Transcription regulatory protein SNF2, pu...    35   2.6  
tr|B6H4I0|B6H4I0_PENCH Pc13g09690 protein OS=Penicillium chrysog...    35   2.6  
tr|Q026G4|Q026G4_SOLUE Transcriptional regulator, XRE family OS=...    34   4.4  
tr|A9VAQ5|A9VAQ5_MONBE Predicted protein OS=Monosiga brevicollis...    34   4.4  
tr|B8NM22|B8NM22_ASPFL Putative uncharacterized protein OS=Asper...    34   4.4  
tr|A2QPC5|A2QPC5_ASPNC Putative uncharacterized protein OS=Asper...    34   4.4  
tr|B0UQQ6|B0UQQ6_METS4 Putative transmembrane anti-sigma factor ...    33   5.7  
tr|A8IIG0|A8IIG0_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   5.7  
tr|Q2U5D5|Q2U5D5_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   5.7  
tr|B8IBU7|B8IBU7_METNO Putative transmembrane anti-sigma factor ...    33   7.5  
tr|B4III6|B4III6_DROSE GM16155 OS=Drosophila sechellia GN=GM1615...    33   7.5  
tr|B6QQ73|B6QQ73_PENMA Ubiquitin-protein ligase (Tom1), putative...    33   7.5  
tr|A6RCR1|A6RCR1_AJECN Putative uncharacterized protein OS=Ajell...    33   7.5  
tr|Q9NKP3|Q9NKP3_LEIMA Putative uncharacterized protein OS=Leish...    33   9.8  

>tr|A4S4A9|A4S4A9_OSTLU Predicted protein (Fragment) OS=Ostreococcus
            lucimarinus (strain CCE9901) GN=OSTLU_88532 PE=4 SV=1
          Length = 3608

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +2

Query: 32   SDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSH 211
            SDD + + E+ + +   I +   DNE    ++G V +  D  +D+ A   A  + Q ++ 
Sbjct: 3295 SDDVTRELELTISN-LRIQLTAKDNE----LNGAVASLNDLENDKRAIEEAMSELQAAAD 3349

Query: 212  LRTSNMEEGTR--GSLQVEPVRSGASLNSLWQSQLHAQRR 325
            ++ + ++       SL VE  +  A+L++ W +  HA+ R
Sbjct: 3350 MQAARVQTSIEQISSLNVELAKRSAALDASWDNLSHAESR 3389


>tr|Q5B3L5|Q5B3L5_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN4865.2 PE=4 SV=1
          Length = 524

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +2

Query: 32  SDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSH 211
           SDD S++ E + + K       +D+ED++  S     A  +GD +T+   +  DS  S  
Sbjct: 171 SDDESSEEEEVPKAKAKA-AESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSES 229

Query: 212 LRTSNMEEGTRGS 250
              S+ E G+ GS
Sbjct: 230 SSDSDEESGSSGS 242


>tr|B6KRS4|B6KRS4_TOXGO Transcription regulatory protein SNF2,
            putative OS=Toxoplasma gondii ME49 GN=TGME49_078440 PE=4
            SV=1
          Length = 2668

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
 Frame = +2

Query: 50   QSEVIVRDKCTIDVRMADNEDAEVM------SGRVEAAYDQGDDETATGSACEDSQESSH 211
            Q+E  +R    + +   + E AE++      +G  EA     D ETA G     S+E++ 
Sbjct: 1100 QTEEYMRKMGDLIIEQREREGAEIVDPIDLPAGEGEATAASADSETADGLEASQSEETNE 1159

Query: 212  LRTSNMEEGTR--GSLQVEPVRSGASLNSLWQSQ 307
               + ME+G    G    E  ++ ASL+S   S+
Sbjct: 1160 TEDAKMEQGDGKVGDATDEEEKNKASLSSFLLSK 1193


>tr|B6H4I0|B6H4I0_PENCH Pc13g09690 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g09690 PE=4 SV=1
          Length = 792

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 20  FKRASDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQ 199
           F  + D+  + +E ++ +  T   +   NED E  +   E+  D GDD    GS      
Sbjct: 644 FLGSDDESESDTESLLDEPSTGGKKRKRNEDTESGTDEEESGDDDGDDHDKQGSRLSQRI 703

Query: 200 ESSHLRTSNMEEGT----RGSLQVEP 265
           + S+ R + + E T     GS QV P
Sbjct: 704 KRSYERNTKLREITSAPASGSDQVSP 729


>tr|Q026G4|Q026G4_SOLUE Transcriptional regulator, XRE family
           OS=Solibacter usitatus (strain Ellin6076) GN=Acid_2115
           PE=4 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 32  SDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQG 157
           S D  +++E+   D  T D+R  D E +E   GRV +AYD G
Sbjct: 2   SSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIG 43


>tr|A9VAQ5|A9VAQ5_MONBE Predicted protein OS=Monosiga brevicollis
            GN=29308 PE=4 SV=1
          Length = 1154

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
 Frame = +2

Query: 92   RMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESS---------------HLRTSN 226
            R++D++   V+S       D+G  E A     E+ +E                   R + 
Sbjct: 709  RLSDDDTQTVVSSTTAVNGDEGQQEEAEEEEEEEEEEEGPESNAAFPHSNFVAPEQRQTL 768

Query: 227  MEEGTRGSLQVEPVRSGASLNSLWQ---SQLHAQRRLPVFQDITLLG 358
              +     L+ EP+ +GA L+SLW+   +Q H    +  F D TL G
Sbjct: 769  RRQSGYDPLKREPLYAGAELSSLWELALAQNHFHPTVTAFADKTLRG 815


>tr|B8NM22|B8NM22_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_096570 PE=4 SV=1
          Length = 510

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
 Frame = -1

Query: 464 HRPHSSFHESARRHRRSYING*PYNLLKTA-----FKQLHFLVM*C-------------- 342
           H+PH S H+ A R RR       + LLK A       QL FL + C              
Sbjct: 9   HQPHPSIHDPAVRRRR-------WGLLKAAGLNFIVLQLLFLGLFCYLFGSLFQQTTHIH 61

Query: 341 ------LETQEASAGHAIVTATKNLEKPHFGQVQLEGIHGYLPPYLRFSNGCFLDY 192
                 ++    + G AI TA + L+ P F  +  + +  Y  P    S  C +DY
Sbjct: 62  NLHIVYVDYDGGAVGSAIRTAYEQLKGPGFPTLSEQSVSAYSQPSTVRSAVCNIDY 117


>tr|A2QPC5|A2QPC5_ASPNC Putative uncharacterized protein
            OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
            GN=An07g08970 PE=4 SV=1
          Length = 1340

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5    QSHSHFKRASDDRSTQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDETATGSA 184
            Q   H K   D+R TQS V  R++  I   M   E  ++ S  VE A D+ +  +A   A
Sbjct: 1069 QLEQHLKSTLDERGTQSSVNTRERSAIVQEM--TEPGQLKSSAVEDAGDRAEISSAVQEA 1126

Query: 185  C-EDSQESS 208
              ED  +SS
Sbjct: 1127 SQEDGLDSS 1135


>tr|B0UQQ6|B0UQQ6_METS4 Putative transmembrane anti-sigma factor
           OS=Methylobacterium sp. (strain 4-46) GN=M446_4551 PE=4
           SV=1
          Length = 257

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 28/81 (34%), Positives = 32/81 (39%)
 Frame = +2

Query: 44  STQSEVIVRDKCTIDVRMADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTS 223
           ST S   V D   I  R A    A V S R   AYD+   E ATG    D      +R  
Sbjct: 120 STHSPPFVED--AIQARQASQLRARVASLRPSPAYDRAGVEAATGIRLPDLPRDWRVR-- 175

Query: 224 NMEEGTRGSLQVEPVRSGASL 286
                    LQ+ P RSGA +
Sbjct: 176 --------DLQIVPTRSGAGV 188


>tr|A8IIG0|A8IIG0_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_188372 PE=4
           SV=1
          Length = 239

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 98  ADNEDAEVMSGRVEAAYDQGDDETATGSACEDSQESSHLRTSNMEEGTRGSLQVE 262
           AD++D+E+      AAYDQ   E  +G A +D +E   L  +N   G R  ++ +
Sbjct: 103 ADDDDSELPDASDTAAYDQVIAE--SGDAIDDDEEGGVLEAANTVNGARSHIEAD 155