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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918833
Clone id YMU001_000118_A07
Library
Length 271
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTCCTGATATTGCTATGCTTAGGTGGATTGCTTATATAAAGTCCTTGAACCCAAAATTG
AATCACATTGCAAGAAAAGGTAATGCAATGGCAGATATGCTTTCAAGGGCAAGGTATGAA
AATGAGGATGATATGATTGATGAGGAAGAAGATGTGGGCACTAAATTCTACACAATTTCT
CATGCAAAGTGTGATGATATATGCATTGCATCCTCATTAGAGTCCTTTTCAGAGGAGTTC
TATGAGGATGAATGGTTGCTCATAGGTCACT
■■Homology search results ■■ -
sp_hit_id P06719
Definition sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein OS=Plasmodium falciparum (isolate NF7 / Ghana)
Align length 39
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918833|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_A07.
         (271 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein OS=P...    31   1.7  
sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein OS=P...    30   2.9  
sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein (Fra...    30   2.9  
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing...    29   6.4  
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing...    29   6.4  

>sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein
           OS=Plasmodium falciparum (isolate NF7 / Ghana) GN=SD17
           PE=4 SV=1
          Length = 657

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 229 KRTLMRMQCIYHHTLHEKLC-RI*CPHLLPHQSYHPHFH 116
           KRTL + Q  +HH  H     +   PH  PHQ++H H H
Sbjct: 53  KRTLAQKQHEHHHHHHHHHHHQHQAPHQAPHQAHHHHHH 91


>sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein
           OS=Plasmodium falciparum (isolate FCR-3 / Gambia) PE=2
           SV=1
          Length = 634

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 229 KRTLMRMQCIYHHTLHEKLCRI*CPHLLPHQSYHPHFH 116
           KRTL + Q  +HH  H +       H  PHQ++H H H
Sbjct: 53  KRTLAQKQHEHHHHHHHQHQH---QHQAPHQAHHHHHH 87


>sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein
           (Fragment) OS=Plasmodium falciparum PE=2 SV=1
          Length = 473

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 229 KRTLMRMQCIYHHTLHEKLCRI*CPHLLPHQSYHPHFH 116
           KRTL + Q  +HH  H +       H  PHQ++H H H
Sbjct: 53  KRTLAQKQHEHHHHHHHQHQH---QHQAPHQAHHHHHH 87


>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing
            virus (isolate Hohn) PE=3 SV=1
          Length = 2180

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSR 108
            P+  +LRW  +      ++ H+  K N +AD LSR
Sbjct: 1771 PNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSR 1805


>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing
            virus (isolate Shepherd) PE=3 SV=1
          Length = 2179

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSR 108
            P+  +LRW  +      ++ H+  K N +AD LSR
Sbjct: 1770 PNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSR 1804
tr_hit_id A9SEB1
Definition tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 55.1
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918833|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_A07.
         (271 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   2e-06
tr|B6NH97|B6NH97_BRAFL Putative uncharacterized protein (Fragmen...    34   4.1  
tr|Q4EB49|Q4EB49_9RICK Reverse transcriptase polyprotein (Fragme...    33   9.1  
tr|Q9C0U1|Q9C0U1_YARLI YALI0A10395p OS=Yarrowia lipolytica GN=ta...    33   9.1  
tr|Q6CHG3|Q6CHG3_YARLI YALI0A08932p OS=Yarrowia lipolytica GN=YA...    33   9.1  
tr|Q6CFJ9|Q6CFJ9_YARLI YALI0B06303p OS=Yarrowia lipolytica GN=YA...    33   9.1  
tr|Q6CFJ4|Q6CFJ4_YARLI YALI0B06446p OS=Yarrowia lipolytica GN=YA...    33   9.1  
tr|Q6C613|Q6C613_YARLI YALI0E13376p OS=Yarrowia lipolytica GN=YA...    33   9.1  
tr|Q6C3G7|Q6C3G7_YARLI YALI0E34980p OS=Yarrowia lipolytica GN=YA...    33   9.1  

>tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46806 PE=4 SV=1
          Length = 75

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +1

Query: 1   TPDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLS 105
           TPDIAMLRWIAYIKSLN +  H+  K N +ADMLS
Sbjct: 41  TPDIAMLRWIAYIKSLNLEFKHVTEKDNLVADMLS 75


>tr|B6NH97|B6NH97_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_229439 PE=4 SV=1
          Length = 241

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
 Frame = -1

Query: 247 PHRTPLKRTLMRMQCIYH-HTLHEKLCRI*CPHLLP--HQSYH----PHFHTLPLKAYLP 89
           PH  P+  T     CI H HTL   L     PH  P  H S H     HFHTL L   LP
Sbjct: 142 PHTAPVSHTSTHCACISHFHTLRLYLT---LPHTAPVSHTSTHCACISHFHTLRLYLTLP 198


>tr|Q4EB49|Q4EB49_9RICK Reverse transcriptase polyprotein (Fragment)
           OS=Wolbachia endosymbiont of Drosophila ananassae
           GN=WwAna1712 PE=4 SV=1
          Length = 607

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 4   PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSR 108
           P++ + RW  YI+S  PK+ +     N +AD LSR
Sbjct: 150 PNVELKRWFNYIESFRPKILYKPGTTNVVADALSR 184


>tr|Q9C0U1|Q9C0U1_YARLI YALI0A10395p OS=Yarrowia lipolytica GN=ta PE=4
            SV=2
          Length = 2621

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSRARY 117
            P+    RW AYIK  + ++  +  + N +AD LSR ++
Sbjct: 1996 PNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREKF 2033


>tr|Q6CHG3|Q6CHG3_YARLI YALI0A08932p OS=Yarrowia lipolytica
            GN=YALI0A08932g PE=4 SV=1
          Length = 2621

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSRARY 117
            P+    RW AYIK  + ++  +  + N +AD LSR ++
Sbjct: 1996 PNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREKF 2033


>tr|Q6CFJ9|Q6CFJ9_YARLI YALI0B06303p OS=Yarrowia lipolytica
            GN=YALI0B06303g PE=4 SV=1
          Length = 2621

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSRARY 117
            P+    RW AYIK  + ++  +  + N +AD LSR ++
Sbjct: 1996 PNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREKF 2033


>tr|Q6CFJ4|Q6CFJ4_YARLI YALI0B06446p OS=Yarrowia lipolytica
            GN=YALI0B06446g PE=4 SV=1
          Length = 2621

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSRARY 117
            P+    RW AYIK  + ++  +  + N +AD LSR ++
Sbjct: 1996 PNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREKF 2033


>tr|Q6C613|Q6C613_YARLI YALI0E13376p OS=Yarrowia lipolytica
            GN=YALI0E13376g PE=4 SV=1
          Length = 2621

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSRARY 117
            P+    RW AYIK  + ++  +  + N +AD LSR ++
Sbjct: 1996 PNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREKF 2033


>tr|Q6C3G7|Q6C3G7_YARLI YALI0E34980p OS=Yarrowia lipolytica
            GN=YALI0E34980g PE=4 SV=1
          Length = 2621

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 4    PDIAMLRWIAYIKSLNPKLNHIARKGNAMADMLSRARY 117
            P+    RW AYIK  + ++  +  + N +AD LSR ++
Sbjct: 1996 PNAMFTRWFAYIKQFDYEVRFVKGRDNPVADWLSREKF 2033