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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918835
Clone id YMU001_000118_A09
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAACTCACAACTTCGCATAATTTCAGGTGGTGTCTCGGCCATTGCTTCTCGTGAGAGCT
CCACATAAGCCAAAGCCATAGCTAATATAACATCCCTTTGATAGCTTCTAATCAAGCGTT
CTTTCAGTAAACTTTGTCCAACCTGAAGGACAATCTCCATTTCACCAGCCTCTTGAAGCA
AACATAAGGCACCTGGAACCTTGCTAAAAGGAACATCGACCATAATAGTTCCAGCCTCGT
CTTCTAGAAGACTCTCATTGTACTCTCCACGCAGATCTGGATCTGCAAGTGTCTCGCAAG
CACCTCTTAGTATCTCTTGACGAGCAGCAATTGCATCTTGG
■■Homology search results ■■ -
sp_hit_id Q20618
Definition sp|Q20618|SRA13_CAEEL Serpentine receptor class alpha-13 OS=Caenorhabditis elegans
Align length 49
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918835|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_A09.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q20618|SRA13_CAEEL Serpentine receptor class alpha-13 OS=Caen...    30   4.9  
sp|Q31HH3|TRPA_THICR Tryptophan synthase alpha chain OS=Thiomicr...    29   6.4  
sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabid...    29   6.4  
sp|A1BAN4|RS20_PARDP 30S ribosomal protein S20 OS=Paracoccus den...    29   8.3  

>sp|Q20618|SRA13_CAEEL Serpentine receptor class alpha-13
           OS=Caenorhabditis elegans GN=sra-13 PE=2 SV=2
          Length = 335

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 279 QICVESTMRVF*KTRLELLWSMFLLARFQVPYVCFKRLVKWRLSFRLDK 133
           Q+C +S ++    TR+ L+ ++      Q+ Y CFK  + + + F+LD+
Sbjct: 49  QLCAQSIIQY--STRVLLITTILFAVCHQIAYFCFKADLLYTMLFKLDQ 95


>sp|Q31HH3|TRPA_THICR Tryptophan synthase alpha chain
           OS=Thiomicrospira crunogena (strain XCL-2) GN=trpA PE=3
           SV=1
          Length = 272

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 26/88 (29%), Positives = 38/88 (43%)
 Frame = -2

Query: 280 PDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEMEIVLQVGQSLLKERLIRSY 101
           PD+      SL+E  A  I + VPFS       ++Q+A E                 R+ 
Sbjct: 30  PDMTVNLMHSLVEQGADMIELGVPFSDPMADGPVIQKAVE-----------------RAL 72

Query: 100 QRDVILAMALAYVELSREAMAETPPEIM 17
           + +V L   LAYV   R+  A+TP  +M
Sbjct: 73  EHNVSLKNVLAYVTEFRKKDAQTPVILM 100


>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2
           OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2
          Length = 347

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 48  KQWPRHHLKLCEVV 7
           K WP HHLK CE++
Sbjct: 147 KLWPSHHLKYCEII 160


>sp|A1BAN4|RS20_PARDP 30S ribosomal protein S20 OS=Paracoccus
           denitrificans (strain Pd 1222) GN=rpsT PE=3 SV=1
          Length = 89

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 112 IRSYQRDVILAMALAYVELSREAMAETPPEIMR 14
           IR++ R V  A+A    E++REA+    PE+MR
Sbjct: 28  IRTFLRKVEEAIASGNAEIAREALNSAQPELMR 60
tr_hit_id A7QHC5
Definition tr|A7QHC5|A7QHC5_VITVI Chromosome chr2 scaffold_97, whole genome shotgun sequence OS=Vitis vinifera
Align length 113
Score (bit) 143.0
E-value 4.0e-33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918835|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_A09.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QHC5|A7QHC5_VITVI Chromosome chr2 scaffold_97, whole genome...   143   4e-33
tr|A5BDQ0|A5BDQ0_VITVI Putative uncharacterized protein OS=Vitis...   141   1e-32
tr|Q7XAR9|Q7XAR9_ARATH Division protein OS=Arabidopsis thaliana ...   137   3e-31
tr|Q9FIG9|Q9FIG9_ARATH Genomic DNA, chromosome 5, P1 clone:MDH9 ...   137   4e-31
tr|Q7XAS1|Q7XAS1_ARATH Truncated division protein OS=Arabidopsis...   137   4e-31
tr|Q7XAS0|Q7XAS0_ARATH Division protein OS=Arabidopsis thaliana ...   137   4e-31
tr|A9TJI3|A9TJI3_PHYPA Predicted protein OS=Physcomitrella paten...   135   8e-31
tr|A9TA07|A9TA07_PHYPA Predicted protein (Fragment) OS=Physcomit...   121   2e-26
tr|B4FW76|B4FW76_MAIZE Division protein OS=Zea mays PE=2 SV=1         110   5e-23
tr|B8AH18|B8AH18_ORYSI Putative uncharacterized protein OS=Oryza...   103   3e-21
tr|Q7PC78|Q7PC78_ORYSI Plastid division protein OS=Oryza sativa ...    82   2e-14
tr|Q6Z729|Q6Z729_ORYSJ Plastid division protein OS=Oryza sativa ...    82   2e-14
tr|Q0E4E8|Q0E4E8_ORYSJ Os02g0122400 protein OS=Oryza sativa subs...    82   2e-14
tr|B7KEM0|B7KEM0_9CHRO Heat shock protein DnaJ domain protein OS...    64   4e-09
tr|Q9LJL2|Q9LJL2_ARATH Arabidopsis thaliana genomic DNA, chromos...    61   2e-08
tr|Q8VY16|Q8VY16_ARATH Putative uncharacterized protein At3g1918...    61   2e-08
tr|Q2V3U5|Q2V3U5_ARATH Uncharacterized protein At3g19180.2 OS=Ar...    61   2e-08
tr|Q0J921|Q0J921_ORYSJ Os04g0676000 protein OS=Oryza sativa subs...    59   1e-07
tr|A3AYL1|A3AYL1_ORYSJ Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A8ILD8|A8ILD8_CHLRE ARC6-like protein (Fragment) OS=Chlamydom...    59   2e-07
tr|A4S701|A4S701_OSTLU Predicted protein OS=Ostreococcus lucimar...    58   3e-07
tr|Q2JLI5|Q2JLI5_SYNJB DnaJ domain protein OS=Synechococcus sp. ...    57   4e-07
tr|A7QEM0|A7QEM0_VITVI Chromosome chr17 scaffold_85, whole genom...    57   4e-07
tr|Q2JUF7|Q2JUF7_SYNJA DnaJ domain protein OS=Synechococcus sp. ...    57   5e-07
tr|B4AX14|B4AX14_9CHRO Heat shock protein DnaJ domain protein OS...    57   5e-07
tr|B0C6G2|B0C6G2_ACAM1 DnaJ domain protein OS=Acaryochloris mari...    56   8e-07
tr|B6ST49|B6ST49_MAIZE Putative uncharacterized protein OS=Zea m...    56   8e-07
tr|A8YNG5|A8YNG5_MICAE Genome sequencing data, contig C328 OS=Mi...    56   1e-06
tr|Q259H7|Q259H7_ORYSA H0103C06.10 protein OS=Oryza sativa GN=H0...    56   1e-06
tr|B8ARF9|B8ARF9_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06

>tr|A7QHC5|A7QHC5_VITVI Chromosome chr2 scaffold_97, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038716001
           PE=4 SV=1
          Length = 754

 Score =  143 bits (361), Expect = 4e-33
 Identities = 67/113 (59%), Positives = 95/113 (84%)
 Frame = -2

Query: 340 QDAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGE 161
           Q+A+ +R++IL+ ACETLA+P  + EY++ L EDE  TI+  VP+ KVPGALC+LQEAGE
Sbjct: 132 QEALISRRQILQAACETLANPRSKREYSQGLAEDEVETIITQVPWDKVPGALCVLQEAGE 191

Query: 160 MEIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCEL 2
            EIVL +G+SLL+ERL +S+++DV+LAMALAYV+LSR+AMA +PP+ ++ CE+
Sbjct: 192 NEIVLHIGESLLRERLPKSFKQDVVLAMALAYVDLSRDAMALSPPDFIKGCEV 244


>tr|A5BDQ0|A5BDQ0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009566 PE=4 SV=1
          Length = 789

 Score =  141 bits (356), Expect = 1e-32
 Identities = 66/113 (58%), Positives = 95/113 (84%)
 Frame = -2

Query: 340 QDAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGE 161
           ++A+ +R++IL+ ACETLA+P  + EY++ L EDE  TI+  VP+ KVPGALC+LQEAGE
Sbjct: 121 REALISRRQILQAACETLANPRSKREYSQGLAEDEVETIITQVPWDKVPGALCVLQEAGE 180

Query: 160 MEIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCEL 2
            EIVL +G+SLL+ERL +S+++DV+LAMALAYV+LSR+AMA +PP+ ++ CE+
Sbjct: 181 NEIVLXIGESLLRERLPKSFKQDVVLAMALAYVDLSRDAMALSPPDFIKGCEV 233


>tr|Q7XAR9|Q7XAR9_ARATH Division protein OS=Arabidopsis thaliana
           GN=ARC6 PE=2 SV=1
          Length = 801

 Score =  137 bits (345), Expect = 3e-31
 Identities = 64/111 (57%), Positives = 91/111 (81%)
 Frame = -2

Query: 337 DAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEM 158
           DA+ +R++IL+ ACETL++P  R EYNE LL+DE  T++ DVP+ KVPGALC+LQE GE 
Sbjct: 124 DALISRRQILQAACETLSNPRSRREYNEGLLDDEGATVITDVPWDKVPGALCVLQEGGET 183

Query: 157 EIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCE 5
           EIVL+VG++LLKERL +S+++DV+L MALA++++SR+AMA  PP+ +   E
Sbjct: 184 EIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYE 234


>tr|Q9FIG9|Q9FIG9_ARATH Genomic DNA, chromosome 5, P1 clone:MDH9
           (Putative uncharacterized protein At5g42480)
           OS=Arabidopsis thaliana GN=At5g42480 PE=2 SV=1
          Length = 801

 Score =  137 bits (344), Expect = 4e-31
 Identities = 64/111 (57%), Positives = 91/111 (81%)
 Frame = -2

Query: 337 DAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEM 158
           DA+ +R++IL+ ACETL++P  R EYNE LL+DE  T++ DVP+ KVPGALC+LQE GE 
Sbjct: 124 DALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVLQEGGET 183

Query: 157 EIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCE 5
           EIVL+VG++LLKERL +S+++DV+L MALA++++SR+AMA  PP+ +   E
Sbjct: 184 EIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYE 234


>tr|Q7XAS1|Q7XAS1_ARATH Truncated division protein OS=Arabidopsis
           thaliana GN=arc6 PE=4 SV=1
          Length = 324

 Score =  137 bits (344), Expect = 4e-31
 Identities = 64/111 (57%), Positives = 91/111 (81%)
 Frame = -2

Query: 337 DAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEM 158
           DA+ +R++IL+ ACETL++P  R EYNE LL+DE  T++ DVP+ KVPGALC+LQE GE 
Sbjct: 124 DALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVLQEGGET 183

Query: 157 EIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCE 5
           EIVL+VG++LLKERL +S+++DV+L MALA++++SR+AMA  PP+ +   E
Sbjct: 184 EIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYE 234


>tr|Q7XAS0|Q7XAS0_ARATH Division protein OS=Arabidopsis thaliana
           GN=ARC6 PE=4 SV=1
          Length = 801

 Score =  137 bits (344), Expect = 4e-31
 Identities = 64/111 (57%), Positives = 91/111 (81%)
 Frame = -2

Query: 337 DAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEM 158
           DA+ +R++IL+ ACETL++P  R EYNE LL+DE  T++ DVP+ KVPGALC+LQE GE 
Sbjct: 124 DALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVLQEGGET 183

Query: 157 EIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCE 5
           EIVL+VG++LLKERL +S+++DV+L MALA++++SR+AMA  PP+ +   E
Sbjct: 184 EIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYE 234


>tr|A9TJI3|A9TJI3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_195672 PE=4 SV=1
          Length = 782

 Score =  135 bits (341), Expect = 8e-31
 Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 2/115 (1%)
 Frame = -2

Query: 340 QDAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGE 161
           Q A+ AR EILRGA ++L DP++R EYN+ L EDEA T+++DVP++KV GALCLL E  E
Sbjct: 96  QQALLARLEILRGARDSLVDPEIRAEYNQGLAEDEADTLILDVPWTKVGGALCLLHEVRE 155

Query: 160 MEIVLQVGQSLL--KERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCEL 2
           +E+VLQ GQ+LL  +E L  +  RDV+ AMAL+Y+ELSREAMAE PP +++SC L
Sbjct: 156 VEVVLQAGQALLAQQEDLPTTLHRDVVFAMALSYMELSREAMAEVPPAVVKSCSL 210


>tr|A9TA07|A9TA07_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_142424 PE=4 SV=1
          Length = 657

 Score =  121 bits (304), Expect = 2e-26
 Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 2/115 (1%)
 Frame = -2

Query: 340 QDAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGE 161
           Q A+ AR EILRGA ++L DP++R EYN+ L EDEA T+++DVP +KV          GE
Sbjct: 32  QQALLARLEILRGARDSLVDPEIRAEYNQGLAEDEADTLILDVPLTKV----------GE 81

Query: 160 MEIVLQVGQSLL--KERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCEL 2
           +E+VLQ GQ+LL  +E L ++  RDV+LAMAL+YVELSREAMAE+PP +++SC L
Sbjct: 82  VEVVLQAGQALLAQQEDLPKTLNRDVVLAMALSYVELSREAMAESPPAVVKSCSL 136


>tr|B4FW76|B4FW76_MAIZE Division protein OS=Zea mays PE=2 SV=1
          Length = 761

 Score =  110 bits (274), Expect = 5e-23
 Identities = 51/112 (45%), Positives = 83/112 (74%)
 Frame = -2

Query: 337 DAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEM 158
           +A+  R+++L+ A +TL +   R EY+ +L ED    + +DV + KVPG LC+LQEAGE 
Sbjct: 124 EALVGRRQMLQIAHDTLTNQSSRTEYDRALSEDRDAALTMDVAWDKVPGVLCVLQEAGEA 183

Query: 157 EIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCEL 2
           ++VL  G+ LL++R  + +++DV+LAMALAYV++SR+AMA +PP+++  CE+
Sbjct: 184 QLVLATGEHLLQDRPPKRFKQDVVLAMALAYVDISRDAMAASPPDVICCCEV 235


>tr|B8AH18|B8AH18_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05646 PE=4 SV=1
          Length = 769

 Score =  103 bits (258), Expect = 3e-21
 Identities = 50/112 (44%), Positives = 80/112 (71%)
 Frame = -2

Query: 337 DAIAARQEILRGACETLADPDLRGEYNESLLEDEAGTIMVDVPFSKVPGALCLLQEAGEM 158
           DA+  R+++L+ A +TL + + R +Y+ +L E+    + +D+ + KVPG LC LQEAGE 
Sbjct: 132 DALVGRRQMLQIAHDTLMNQNSRTQYDRALSENREEALTMDIAWDKVPGVLCALQEAGEA 191

Query: 157 EIVLQVGQSLLKERLIRSYQRDVILAMALAYVELSREAMAETPPEIMRSCEL 2
             VL  G+ LL +R  + +++DV+LAMALAYV+LSR+AMA +PP+++  CE+
Sbjct: 192 LAVLVTGEQLLLDRPPKRFKQDVVLAMALAYVDLSRDAMAASPPDVIGCCEV 243