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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918845
Clone id YMU001_000118_B09
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGACGCGTCTCGAGCGGCAATGTCTCTCTGCCTACAAATTACATAAAAAATGACACTTG
TCTGCTGCCTTTCCGTCGCCCCCATCCCTCTGCCCTCTTCCGCAAACCTTGCTTGCTTCT
CATACTTCTGAGTGACCTTCTTCGTCGTCGAGTAAGTGTTGCTTTCTTGTCTGCTTTGCT
GTTTGTTAGGGTTAAAGTTGTAGGCTATGGACCCTCAAATACATTACCCTTCTTTAAATG
CCCCGGCTGAAACGCCTCTCTCTTCTGATCAGCAGTCGCGCCTGCGCTACCCAGACCCCG
TCTCCATAGATGCCATCACTGCAGATCTTTCCAAGAAGATCGAGGTCTCCCCTGTTGAGG
CATCCGAGACTCTGTTAGTCTCTGTGCCTGACGCCGTCGCTCACCTTGTCGATCGCGAGG
CTAGCCCTCACCTTGCAAGTGGCCCCTTCTCTATTGTTCGTCTTAACCAGGATGGCAACG
GCATTGCTGTCTTTGCACGTGTAGGCAAGGAGCTTCAATGGCCTCTCACAAAGGATCAA
■■Homology search results ■■ -
sp_hit_id Q6BXI1
Definition sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debaryomyces hansenii
Align length 45
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918845|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_B09.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debar...    32   2.6  
sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor OS=Pi...    31   4.4  
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...    30   5.7  
sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens GN=...    30   5.7  
sp|Q2RBE3|WNK7_ORYSJ Probable serine/threonine-protein kinase WN...    30   7.5  

>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16
           OS=Debaryomyces hansenii GN=SEC16 PE=3 SV=2
          Length = 2130

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 204 AMDPQIHYPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKK 338
           +M P++H PS+NA    P+ +++Q+ +    P+S    T  L KK
Sbjct: 620 SMPPKLHSPSMNAVGSVPVPNEKQATM--SQPLSAAVSTQGLQKK 662


>sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor
           OS=Pichia angusta GN=PEX5 PE=3 SV=1
          Length = 569

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -2

Query: 205 AYNFNPNKQQSRQESNTYSTTKKVTQKYEKQARFAEEGRGMGATERQQTSVIFY 44
           A N NP+ Q      + +S  K+VTQ + K A+ + EG  M +  +    V+FY
Sbjct: 378 ARNANPDIQAD----DRFSLNKRVTQLFIKAAQLSPEGANMDSEVQTGLGVLFY 427


>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza
           sativa subsp. japonica GN=U2AF65A PE=2 SV=2
          Length = 574

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 462 DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESRMPQQGRPRSS 334
           D   RRGH       RDR G RR +++    SR P +GR R S
Sbjct: 124 DRDRRRGHDSERRRDRDRDGHRRHRSR----SRSPSKGRDRRS 162


>sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens
           GN=LAMB3 PE=1 SV=1
          Length = 1172

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 443 PLLYCSS*PGWQRHCCLCTCRQGASMASHK 532
           P  YC+    WQ  CC C  RQ  +  SH+
Sbjct: 52  PETYCTQYGEWQMKCCKCDSRQPHNYYSHR 81


>sp|Q2RBE3|WNK7_ORYSJ Probable serine/threonine-protein kinase WNK7
           OS=Oryza sativa subsp. japonica GN=WNK7 PE=2 SV=2
          Length = 622

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 522 AIEAPCLHVQRQQC-----RCHPG*DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESR 364
           A+ A  LH Q+Q C     R  P        G     G PR R+GE  R+ +R++ +R
Sbjct: 498 AVSASSLHQQQQHCSASSSRLGPASASASEDGGGGHAGRPRQREGEEERRRRRMSRNR 555
tr_hit_id A9TKT2
Definition tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 67
Score (bit) 82.0
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918845|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_B09.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella paten...    82   2e-14
tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella paten...    77   8e-13
tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   4e-12
tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment) OS=Physcomit...    73   8e-12
tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia si...    71   3e-11
tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome...    71   3e-11
tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.11...    69   2e-10
tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   3e-10
tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.2...    67   5e-10
tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella paten...    67   5e-10
tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome ...    66   1e-09
tr|Q94II1|Q94II1_ARATH ERD7 protein (Fragment) OS=Arabidopsis th...    60   6e-08
tr|Q8LA30|Q8LA30_ARATH Putative senescence-associated protein 12...    60   6e-08
tr|O48832|O48832_ARATH Putative senescence-related protein (Prob...    60   6e-08
tr|B8LK66|B8LK66_PICSI Putative uncharacterized protein OS=Picea...    57   8e-07
tr|A9RJ80|A9RJ80_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A7PEH2|A7PEH2_VITVI Chromosome chr11 scaffold_13, whole genom...    54   4e-06
tr|Q5JM97|Q5JM97_ORYSJ cDNA clone:001-022-B06, full insert seque...    54   7e-06
tr|B8A8R5|B8A8R5_ORYSI Putative uncharacterized protein OS=Oryza...    54   7e-06
tr|A2ZXD7|A2ZXD7_ORYSJ Putative uncharacterized protein OS=Oryza...    54   7e-06
tr|A9NV63|A9NV63_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|Q9LVE6|Q9LVE6_ARATH Similarity to senescence-associated prote...    52   3e-05
tr|Q3EB29|Q3EB29_ARATH Uncharacterized protein At3g21600.2 OS=Ar...    52   3e-05
tr|Q10P99|Q10P99_ORYSJ Os03g0241900 protein OS=Oryza sativa subs...    47   8e-04
tr|A2XEE9|A2XEE9_ORYSI Putative uncharacterized protein OS=Oryza...    47   8e-04
tr|Q8GY71|Q8GY71_ARATH Putative uncharacterized protein At4g1545...    46   0.001
tr|O23397|O23397_ARATH Putative uncharacterized protein dl3768w ...    46   0.001
tr|B6U1F2|B6U1F2_MAIZE Senescence-associated protein 12 OS=Zea m...    45   0.002
tr|B4F8T3|B4F8T3_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005
tr|A9TN68|A9TN68_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.10 

>tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196034 PE=4 SV=1
          Length = 408

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 37/67 (55%), Positives = 49/67 (73%)
 Frame = +3

Query: 336 KIEVSPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKEL 515
           K + +P++  E  LV+VPDA+ HLVD + SPHLA+  FS+VR+ Q GNGI V  RVG++L
Sbjct: 9   KDDDTPLDPREECLVTVPDAIVHLVDDQQSPHLATAHFSVVRITQKGNGIVVLVRVGEDL 68

Query: 516 QWPLTKD 536
            WPL KD
Sbjct: 69  HWPLMKD 75


>tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200827 PE=4 SV=1
          Length = 430

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 48/108 (44%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
 Frame = +3

Query: 231 SLNAPAETPLSSDQQSRLRYPDPVS-----IDAITADLSKKIEVSPVEASETLLVSVPDA 395
           SL    ++P  S+  S L YP   S       A  AD++     SPV A E LLV++P A
Sbjct: 15  SLKIRPQSPFPSNASSSL-YPKIQSEGRPPAAAAAADMASGSANSPVGAFEELLVTIPGA 73

Query: 396 VAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQ 539
           + HLVD + S  LASG FSIVR+NQ    I V  R G  LQWPL  D+
Sbjct: 74  LVHLVDDQESVLLASGDFSIVRINQQNQRIVVLVRAGDSLQWPLVSDE 121


>tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23114 PE=4 SV=1
          Length = 365

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 36/60 (60%), Positives = 42/60 (70%)
 Frame = +3

Query: 357 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKD 536
           E SE +LV V  AV HLVD E SP LA G FS+V + Q+GNGI  F +VG  L+WPLTKD
Sbjct: 1   ETSEEVLVRVRGAVVHLVDDEESPLLAEGSFSVVLIEQEGNGIVAFVKVGDNLRWPLTKD 60


>tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23136 PE=4 SV=1
          Length = 366

 Score = 73.2 bits (178), Expect = 8e-12
 Identities = 35/61 (57%), Positives = 43/61 (70%)
 Frame = +3

Query: 357 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKD 536
           EASE +LV +  AV HLVD + SP L  G FSIV + Q GNG+  F RVG +L+WPLTKD
Sbjct: 1   EASEEVLVRIRGAVVHLVDDQKSPLLGDGDFSIVLIEQAGNGLVTFVRVGDKLRWPLTKD 60

Query: 537 Q 539
           +
Sbjct: 61  E 61


>tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia
           sinensis PE=2 SV=1
          Length = 448

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 32/64 (50%), Positives = 45/64 (70%)
 Frame = +3

Query: 348 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 527
           S +E+SE +L+ VP  + HL+D+E S  LA G  +IVRL Q GN +AV AR+  ++QWPL
Sbjct: 60  SQLESSEEILIRVPGTIVHLIDKEQSVELACGELTIVRLLQGGNVVAVLARIDDQIQWPL 119

Query: 528 TKDQ 539
            KD+
Sbjct: 120 AKDE 123


>tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036757001
           PE=4 SV=1
          Length = 395

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = +3

Query: 348 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 527
           +P E+ E +LV +P  + HL+D++ S  LASG  SI+RL Q  N +AV ARVG+E+QWPL
Sbjct: 59  APPESLEEVLVMLPGVILHLIDKQYSVELASGDLSIIRLWQGNNIVAVLARVGQEIQWPL 118

Query: 528 TKDQ 539
            KD+
Sbjct: 119 AKDE 122


>tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.110
           (Putative uncharacterized protein AT4g35980)
           OS=Arabidopsis thaliana GN=T19K4.110 PE=2 SV=1
          Length = 512

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 40/105 (38%), Positives = 61/105 (58%)
 Frame = +3

Query: 225 YPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAH 404
           YPS+N        +D  + + +PDP + D+ +A         P  A+E +++++  A+ H
Sbjct: 39  YPSINV-------NDLVNNI-FPDPTASDSASA---------PPLATEEVILTIHGAMVH 81

Query: 405 LVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQ 539
           L+D+  S  LA G   I+RL Q    +AVFARVG E+QWPLTKD+
Sbjct: 82  LIDKSYSVELACGDLEILRLVQGDITVAVFARVGDEIQWPLTKDE 126


>tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22416 PE=4 SV=1
          Length = 371

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 32/62 (51%), Positives = 40/62 (64%)
 Frame = +3

Query: 351 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLT 530
           P+   E  L S P A+ +LVD + SPHLA+  FSIVR+ Q GN   V  RVG++L WPL 
Sbjct: 7   PLNPREECLFSTPVAIVYLVDEQQSPHLATDYFSIVRITQKGNDSVVIVRVGEDLHWPLM 66

Query: 531 KD 536
           KD
Sbjct: 67  KD 68


>tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.290
           (AT3g51250/F24M12_290) OS=Arabidopsis thaliana
           GN=F24M12.290 PE=2 SV=1
          Length = 463

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 31/64 (48%), Positives = 46/64 (71%)
 Frame = +3

Query: 348 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 527
           +P +A+E +L+ VP A+ +L+D+  S  LA G F+IVR+ Q  N +AV A VG E+QWPL
Sbjct: 69  APPQATEEVLIRVPGAILNLIDKSYSVELACGDFTIVRIIQGQNIVAVLANVGNEIQWPL 128

Query: 528 TKDQ 539
           TK++
Sbjct: 129 TKNE 132


>tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100871 PE=4 SV=1
          Length = 287

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +3

Query: 351 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWP 524
           P+   E  L S P A+ HLVD + +P LA+ PFSIVR+ Q GNG  V  RVG++L WP
Sbjct: 47  PLNPREECLFSTPAAIVHLVDEQQNPRLATDPFSIVRITQKGNGSVVIVRVGEDLHWP 104