BP918847 |
Clone id |
YMU001_000118_B11 |
Library |
YMU01 |
Length |
446 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000118_B11. |
Accession |
BP918847 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCGAGTTAATGATGAAATGCCACTGAGGCCGATGATGGAAGTACGTGCTTTTGCCAAAT GGGGCATTGACTTCATTGGTCCCATCAATACTCTAGGATACAGGAAATGCGTACAATACA TCATCATAGCAACAGATTACATGACAAAGTGGACGGAAGCCAAAGCAACCCAAAAAACTG ATGCAAGGACTGCAGCTCAGTTCCTTTTCGGAAACTTGTTTACGCAGTATGGACTATCAA TCAAAATAGTAAGCCATAGAGGAACACACTTTGTGAACGACGTCATTGAGAGCCTCCTTG ATGAATTCATGGTGGTCCATCACAAGTTAGCACCCTATCATCCGCAAGCCAACAGATAGG CAGAGAGTACTAACAAAATCCTATGCACAGTGCTCACCAAAATAGTCAGTGACTCAAGAA AGGATTGGGATCAAAAGCTACACACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P03356 |
Definition |
sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus |
Align length |
131 |
Score (bit) |
52.0 |
E-value |
1.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918847|Adiantum capillus-veneris mRNA, clone: YMU001_000118_B11. (446 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus... 52 1e-06 sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen... 52 1e-06 sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (... 51 2e-06 sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia vi... 51 3e-06 sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi... 51 3e-06 sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia vi... 50 3e-06 sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia v... 50 4e-06 sp|P03360|POL_AVIRE Pol polyprotein (Fragment) OS=Avian reticulo... 50 4e-06 sp|P08361|POL_MLVCB Pol polyprotein (Fragment) OS=Cas-Br-E murin... 48 2e-05 sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus... 48 2e-05 sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protei... 47 4e-05 sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus typ... 47 5e-05 sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus ty... 44 2e-04 sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 44 2e-04 sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 44 3e-04 sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 42 0.001 sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 39 0.008 sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein ... 39 0.008 sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficien... 39 0.010 sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p... 38 0.017 sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 38 0.022 sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Sa... 35 0.14 sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Sa... 35 0.19 sp|P03359|POL_WMSV Pol polyprotein (Fragment) OS=Woolly monkey s... 34 0.32 sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficien... 34 0.32 sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficien... 33 0.54 sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus... 33 0.54 sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficien... 32 1.2 sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficien... 32 1.6 sp|Q9QC07|POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protei... 32 1.6
>sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 Length = 1196
Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Frame = +3
Query: 45 RAFAKWGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNL 218 R + W IDF + P GY+ Y+++ D + W EA T++ AR ++ L + Sbjct: 908 RPGSHWEIDFTEVKP-GLYGYK----YLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEI 962
Query: 219 FTQYGLSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLT 398 F ++G+ + S G F + V +S+ D + Y PQ++ E N+ + LT Sbjct: 963 FPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLT 1022
Query: 399 KI-VSDSRKDW 428 K+ ++ +DW Sbjct: 1023 KLTLAAGTRDW 1033
>sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 Length = 1046
Score = 51.6 bits (122), Expect = 1e-06 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Frame = +3
Query: 60 WGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYG 233 W IDF + P + GY+ Y+++ D + W EA T++ A A+ + +F ++G Sbjct: 765 WEIDFTEVKP-HYAGYK----YLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFG 819
Query: 234 LSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKIVSD 413 L I S G FV+ V + L + Y PQ++ E N+ + LTK+ + Sbjct: 820 LPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLE 879
Query: 414 S-RKDWDQKL 440 + KDW + L Sbjct: 880 TGLKDWRRLL 889
>sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 Length = 1189
Score = 51.2 bits (121), Expect = 2e-06 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Frame = +3
Query: 60 WGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYG 233 W IDF + P + GY+ Y+++ D + W EA T++ A A+ + +F ++G Sbjct: 908 WEIDFTEVKP-HYAGYK----YLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFG 962
Query: 234 LSIKIVSHRGTHFVNDVIESLLDEFMVVHHKL-APYHPQANR*AESTNKILCTVLTKIVS 410 L I S G FV+ V + L + ++ KL Y PQ++ E N+ + LTK+ Sbjct: 963 LPKVIGSDNGPAFVSQVSQGLA-RILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1021
Query: 411 DS-RKDWDQKL 440 ++ KDW + L Sbjct: 1022 ETGLKDWRRLL 1032
>sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 Length = 1204
Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Frame = +3
Query: 60 WGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYG 233 W IDF + P GY+ Y+++ D + W EA T+K A+ + L +F ++G Sbjct: 918 WEIDFTEVKP-GLYGYK----YLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFG 972
Query: 234 LSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKI-VS 410 + + + G FV+ V +++ D V Y PQ++ E N+ + LTK+ ++ Sbjct: 973 MPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 1032
Query: 411 DSRKDW 428 +DW Sbjct: 1033 TGSRDW 1038
>sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 Length = 1204
Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Frame = +3
Query: 60 WGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYG 233 W IDF + P GY+ Y+++ D + W EA T+K A+ + L +F ++G Sbjct: 918 WEIDFTEVKP-GLYGYK----YLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFG 972
Query: 234 LSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKI-VS 410 + + + G FV+ V +++ D V Y PQ++ E N+ + LTK+ ++ Sbjct: 973 MPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 1032
Query: 411 DSRKDW 428 +DW Sbjct: 1033 TGSRDW 1038
>sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 Length = 1204
Score = 50.4 bits (119), Expect = 3e-06 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Frame = +3
Query: 60 WGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYG 233 W IDF + P GY+ Y+++ D + W EA T+K A+ + L +F ++G Sbjct: 918 WEIDFTEVKP-GLYGYK----YLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFG 972
Query: 234 LSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKI-VS 410 + + + G FV+ V +++ D V Y PQ++ E N+ + LTK+ ++ Sbjct: 973 MPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 1032
Query: 411 DSRKDW 428 +DW Sbjct: 1033 TGSRDW 1038
>sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia virus GN=pol PE=1 SV=2 Length = 1199
Score = 50.1 bits (118), Expect = 4e-06 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Frame = +3
Query: 60 WGIDF--IGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYG 233 W IDF I P GY+ Y+++ D + W EA T+K A+ + L +F ++G Sbjct: 913 WEIDFTEIKP-GLYGYK----YLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFG 967
Query: 234 LSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKI-VS 410 + + + G FV+ V +++ D + Y PQ++ E N+ + LTK+ ++ Sbjct: 968 MPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 1027
Query: 411 DSRKDW 428 +DW Sbjct: 1028 TGSRDW 1033
>sp|P03360|POL_AVIRE Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1 Length = 473
Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/121 (24%), Positives = 54/121 (44%) Frame = +3
Query: 60 WGIDFIGPINTLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYGLS 239 W +DF I G K Y+++ D + W EA ++ ++ + L ++ ++GL Sbjct: 192 WEVDFTEMITAKGGYK---YLLVLVDTFSGWVEAYPAKRETSQVVIKHLILDIIPRFGLP 248
Query: 240 IKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKIVSDSR 419 ++I S G FV V + L + V Y PQ++ E N+ L + K+ R Sbjct: 249 VQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKAIAKLEDRDR 308
Query: 420 K 422 + Sbjct: 309 R 309
>sp|P08361|POL_MLVCB Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=pol PE=3 SV=1 Length = 282
Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Frame = +3
Query: 114 QYIIIATDYMTKWTEAKATQKTDARTAAQFLFGNLFTQYGLSIKIVSHRGTHFVNDVIES 293 +Y+++ D + W EA T+K A+ + L +F ++G+ + + G FV+ V ++ Sbjct: 14 KYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQT 73
Query: 294 LLDEFMVVHHKLAPYHPQANR*AESTNKILCTVLTKI-VSDSRKDW 428 + D + Y PQ++ E N+ + LTK+ ++ +DW Sbjct: 74 VADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 119
>sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 Length = 1143
Score = 47.8 bits (112), Expect = 2e-05 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Frame = +3
Query: 24 LRPMMEVRAFAKWGIDFIGPIN-TLGYRKCVQYIIIATDYMTKWTEAKATQKTDARTAAQ 200 LRP + F K+ ID+IGP+ + GY Y+++ D MT +T T+ + Sbjct: 864 LRPDRPQKPFDKFFIDYIGPLPPSQGYL----YVLVVVDGMTGFTWLYPTKAPSTSATVK 919
Query: 201 FLFGNLFTQYGLSIKIVSHRGTHFVNDVIESLLDEFMVVHHKLAPYHPQANR*AESTNKI 380 L N+ T + I S +G F + E + PYHPQ+ E N Sbjct: 920 SL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSD 977
Query: 381 LCTVLTKIVSDSRKDW 428 + +LTK++ W Sbjct: 978 IKRLLTKLLVGRPTKW 993
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BSN7 |
Definition |
tr|A5BSN7|A5BSN7_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
144 |
Score (bit) |
120.0 |
E-value |
4.0e-26 |
Report |
|